Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001541

Physical Location & Seq

Genomic Coordinates Reverse (-)

21473172 .. 21474186

Gene Structure 1015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g26530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTATCTTCAAGATGTTGAGACAGCTTTCAATCATCCTCAACGCAATAATGACGATGGTGTCAGAAAAGAGAAACTGTCTGTTTTTGCCCAAATTGCGCGACCATTCAGCGATCTTGTAAAAGGTGAATTGTTTACCAAAAAGGACATGGGGGTAGCGCATTGGTTCATACTCAACAATTGTGACGAGGTTTTGCCATACCTTGAAGAGAATGAACAGTTGATGAAGCGAGAACATCCTTCACATTTATATGCCAAGAAGCACCGTGACTTGTTTCCTTCGTGGTTTCATGCACATGAATTGAATTCACCTTCTTACGATGAAGAATTATATAACTTGGCAAGAGGACCGCTTCACGTTGAATTGTTCTTAGGTTGTCATGTCAACGAGATCAAGTTCTTTGGGGCAACATGTGATGACAAGTCGTCTACTCAAAATAATGGTGTCCATGTCCCGGGTGCGGGCGACAATGAAGACAAACTAACTAGTGTAGTACAATTGCTTTACAAAGACAGGTGTCAAGTGATACTGTTTACGTGTCTTTGGTTTGATACAAACCCACATAATCGAATGAGTGTTAAGCGAGACCATGGTTTACTATCAGTAAACACTACAAGACATTGGTACGATGAAGACCAATACATTTTGGCAACTGTGGCGAAACAAATATTCTATCTAGACGACCCTAAAGCCGGCAATGGTTGGAAAGTTGTCCAGAAGATTGATCGAAGATGGCTATATAATATTCAGGAACTAGATCATCATGACAACGACGACAACATTGTTGACCAATACAATGCATCGGAAGAGGAAAATGAAGATGAGAACAAATGGGAATCTGGAAATGATAGTAGTGAGGATAGCGAGAGTTATTATTGTAGTTCGGATGAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

299

Amino Acids

34.84

Weight (kDa)

4.87

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15893 FvH4_5g23171 FvH4_6g23073 FvH4_7g02480 FvH4_7g02480 FvH4_7g02600
pyrus_communis	pycom02g10360 pycom02g18870 pycom06g15020 pycom13g11050 pycom14g06730 pycom15g26530 pycom17g16790
rosa_chinensis	RchiOBHm_Chr1g0381371 RchiOBHm_Chr2g0086251 RchiOBHm_Chr2g0106121 RchiOBHm_Chr4g0403821 RchiOBHm_Chr5g0040561 RchiOBHm_Chr6g0246651
rosa_laevigata	RLG00000001826
rosa_multiflora	Rmu_co8127980.1_g000001 Rmu_sc0000073.1_g000004 Rmu_sc0000149.1_g000029 Rmu_sc0001102.1_g000012 Rmu_sc0001598.1_g000015 Rmu_sc0002308.1_g000042 Rmu_sc0002804.1_g000004 Rmu_sc0003158.1_g000010 Rmu_sc0004413.1_g000035 Rmu_sc0005000.1_g000010 Rmu_sc0005802.1_g000035 Rmu_sc0007253.1_g000002 Rmu_sc0007522.1_g000007 Rmu_sc0008079.1_g000012 Rmu_sc0011112.1_g000006 Rmu_sc0011253.1_g000005 Rmu_sc0011626.1_g000001 Rmu_sc0013472.1_g000006 Rmu_sc0024024.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025400 Rroxscaffold_1G00027640 Rroxscaffold_1G00035510 Rroxscaffold_7G00166860
rosa_samantha	Rh2CG188800 Rh2CG425500 Rh3CG094200 Rh4DG286100 Rh5AG465700 Rh6DG153300 Rh6DG434900
rosa_wichuraiana	Rw2G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	428
AccII	CGCG	1 cut(s)	100
AciI	CCGC	2 cut(s)	350, 461
AcsI	RAATTY	1 cut(s)	304
AfaI	GTAC	2 cut(s)	495, 626
AfiI	CCNNNNNNNGG	4 cut(s)	454, 460, 461, 692
AflIII	ACRYGT	2 cut(s)	410, 536
AgsI	TTSAA	5 cut(s)	11, 31, 206, 304, 362
AhdI	GACNNNNNGTC	1 cut(s)	424
AhlI	ACTAGT	1 cut(s)	485
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	14, 579
Ama87I	CYCGRG	1 cut(s)	454
ApoI	RAATTY	1 cut(s)	304
AspLEI	GCGC	2 cut(s)	100, 160
AspS9I	GGNCC	1 cut(s)	347
AsuC2I	CCSGG	2 cut(s)	455, 456
AsuHPI	GGTGA	2 cut(s)	137, 300
AvaI	CYCGRG	1 cut(s)	454
AvaII	GGWCC	1 cut(s)	347
BbsI	GAAGAC	2 cut(s)	480, 639
BccI	CCATC	2 cut(s)	50, 726
BcnI	CCSGG	2 cut(s)	455, 456
BcoDI	GTCTC	2 cut(s)	14, 579
BcuI	ACTAGT	1 cut(s)	485
BfaI	CTAG	3 cut(s)	486, 677, 755
Bme1390I	CCNGG	2 cut(s)	455, 456
Bme18I	GGWCC	1 cut(s)	347
BmeRI	GACNNNNNGTC	1 cut(s)	424
BmeT110I	CYCGRG	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	347
BmrFI	CCNGG	2 cut(s)	455, 456
BmsI	GCATC	1 cut(s)	809
BoxI	GACNNNNGTC	1 cut(s)	516
BpiI	GAAGAC	2 cut(s)	480, 639
BpuMI	CCSGG	2 cut(s)	455, 456
BsaAI	YACGTR	1 cut(s)	537
BsaI	GGTCTC	1 cut(s)	579
BsaJI	CCNNGG	2 cut(s)	454, 589
Bsc4I	CCNNNNNNNGG	4 cut(s)	454, 460, 461, 692
Bse118I	RCCGGY	1 cut(s)	692
Bse3DI	GCAATG	1 cut(s)	703
BseDI	CCNNGG	2 cut(s)	454, 589
BseGI	GGATG	3 cut(s)	34, 235, 892
BseLI	CCNNNNNNNGG	4 cut(s)	454, 460, 461, 692
BseMI	GCAATG	1 cut(s)	703
Bsh1236I	CGCG	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	454
BsiSI	CCGG	2 cut(s)	455, 693
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	4 cut(s)	454, 460, 461, 692
BsmAI	GTCTC	2 cut(s)	14, 579
BsmFI	GGGAC	1 cut(s)	437
Bso31I	GGTCTC	1 cut(s)	579
BsoBI	CYCGRG	1 cut(s)	454
Bsp143I	GATC	4 cut(s)	112, 390, 724, 757
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	2 cut(s)	350, 461
BspFNI	CGCG	1 cut(s)	100
BspHI	TCATGA	1 cut(s)	763
BspTNI	GGTCTC	1 cut(s)	579
BsrDI	GCAATG	1 cut(s)	703
BsrFI	RCCGGY	1 cut(s)	692
BssAI	RCCGGY	1 cut(s)	692
BssECI	CCNNGG	2 cut(s)	454, 589
BssMI	GATC	4 cut(s)	112, 390, 724, 757
BssT1I	CCWWGG	1 cut(s)	589
Bst4CI	ACNGT	5 cut(s)	78, 219, 266, 531, 655
Bst6I	CTCTTC	2 cut(s)	201, 801
BstBAI	YACGTR	1 cut(s)	537
BstC8I	GCNNGC	2 cut(s)	463, 694
BstDEI	CTNAG	1 cut(s)	370
BstDSI	CCRYGG	1 cut(s)	589
BstF5I	GGATG	3 cut(s)	34, 235, 892
BstFNI	CGCG	1 cut(s)	100
BstHHI	GCGC	2 cut(s)	100, 160
BstKTI	GATC	4 cut(s)	115, 393, 727, 760
BstMAI	GTCTC	2 cut(s)	14, 579
BstMBI	GATC	4 cut(s)	112, 390, 724, 757
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 656
BstNSI	RCATGY	1 cut(s)	414
BstPAI	GACNNNNGTC	1 cut(s)	516
BstSCI	CCNGG	2 cut(s)	453, 454
BstUI	CGCG	1 cut(s)	100
BstV2I	GAAGAC	2 cut(s)	480, 639
BtgI	CCRYGG	1 cut(s)	589
BtsCI	GGATG	3 cut(s)	34, 235, 892
Cac8I	GCNNGC	2 cut(s)	463, 694
CciI	TCATGA	1 cut(s)	763
CfoI	GCGC	2 cut(s)	100, 160
Cfr10I	RCCGGY	1 cut(s)	692
Cfr13I	GGNCC	1 cut(s)	347
Cfr9I	CCCGGG	1 cut(s)	454
Csp6I	GTAC	2 cut(s)	494, 625
CviAII	CATG	8 cut(s)	148, 290, 296, 380, 411, 449, 590, 764
CviJI	RGCY	3 cut(s)	26, 692, 736
CviKI_1	RGCY	3 cut(s)	26, 692, 736
CviQI	GTAC	2 cut(s)	494, 625
DdeI	CTNAG	1 cut(s)	370
DpnI	GATC	4 cut(s)	114, 392, 726, 759
DpnII	GATC	4 cut(s)	112, 390, 724, 757
DrdI	GACNNNNNNGTC	1 cut(s)	59
DriI	GACNNNNNGTC	1 cut(s)	424
DseDI	GACNNNNNNGTC	1 cut(s)	59
Eam1104I	CTCTTC	2 cut(s)	201, 801
Eam1105I	GACNNNNNGTC	1 cut(s)	424
EarI	CTCTTC	2 cut(s)	201, 801
Eco130I	CCWWGG	1 cut(s)	589
Eco31I	GGTCTC	1 cut(s)	579
Eco47I	GGWCC	1 cut(s)	347
Eco88I	CYCGRG	1 cut(s)	454
EcoRI	GAATTC	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	589
EcoT22I	ATGCAT	1 cut(s)	802
ErhI	CCWWGG	1 cut(s)	589
FaeI	CATG	8 cut(s)	151, 293, 299, 383, 414, 452, 593, 767
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	8 cut(s)	147, 289, 295, 379, 410, 448, 589, 763
FauI	CCCGC	1 cut(s)	454
FblI	GTMKAC	1 cut(s)	428
FokI	GGATG	2 cut(s)	21, 222
FspBI	CTAG	3 cut(s)	486, 677, 755
GlaI	GCGC	2 cut(s)	99, 159
HapII	CCGG	2 cut(s)	455, 693
HhaI	GCGC	2 cut(s)	100, 160
Hin1II	CATG	8 cut(s)	151, 293, 299, 383, 414, 452, 593, 767
Hin6I	GCGC	2 cut(s)	98, 158
HinP1I	GCGC	2 cut(s)	98, 158
HincII	GTYRAC	2 cut(s)	385, 787
HindII	GTYRAC	2 cut(s)	385, 787
HinfI	GANTC	1 cut(s)	836
HpaII	CCGG	2 cut(s)	455, 693
HphI	GGTGA	2 cut(s)	137, 300
Hpy166II	GTNNAC	7 cut(s)	135, 385, 429, 534, 596, 607, 787
Hpy188I	TCNGA	3 cut(s)	65, 805, 886
Hpy188III	TCNNGA	6 cut(s)	11, 677, 715, 749, 764, 840
Hpy8I	GTNNAC	7 cut(s)	135, 385, 429, 534, 596, 607, 787
Hpy99I	CGWCG	1 cut(s)	776
HpyAV	CCTTC	3 cut(s)	249, 288, 321
HpyCH4III	ACNGT	5 cut(s)	78, 219, 266, 531, 655
HpyCH4IV	ACGT	2 cut(s)	357, 536
HpyCH4V	TGCA	2 cut(s)	293, 800
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 656
HpyF3I	CTNAG	1 cut(s)	370
HpySE526I	ACGT	2 cut(s)	357, 536
Hsp92II	CATG	8 cut(s)	151, 293, 299, 383, 414, 452, 593, 767
HspAI	GCGC	2 cut(s)	98, 158
KroI	GCCGGC	1 cut(s)	692
KroNI	GCCGGC	1 cut(s)	694
Kzo9I	GATC	4 cut(s)	112, 390, 724, 757
LpnPI	CCDG	6 cut(s)	468, 499, 706, 728, 734, 825
LweI	GCATC	1 cut(s)	809
MaeI	CTAG	3 cut(s)	486, 677, 755
MaeII	ACGT	2 cut(s)	357, 536
MaeIII	GTNAC	2 cut(s)	182, 266
MalI	GATC	4 cut(s)	114, 392, 726, 759
MboI	GATC	4 cut(s)	112, 390, 724, 757
MboII	GAAGA	8 cut(s)	218, 335, 485, 644, 730, 741, 818, 830
MfeI	CAATTG	2 cut(s)	178, 497
MluCI	AATT	8 cut(s)	93, 128, 178, 299, 304, 326, 362, 497
MmeI	TCCRAC	1 cut(s)	683
MnlI	CCTC	6 cut(s)	48, 181, 338, 802, 850, 883
Mph1103I	ATGCAT	1 cut(s)	802
MroNI	GCCGGC	1 cut(s)	692
MseI	TTAA	1 cut(s)	579
MslI	CAYNNNNRTG	2 cut(s)	249, 294
MspI	CCGG	2 cut(s)	455, 693
MspR9I	CCNGG	2 cut(s)	455, 456
MunI	CAATTG	2 cut(s)	178, 497
MvnI	CGCG	1 cut(s)	100
MwoI	GCNNNNNNNGC	2 cut(s)	95, 656
NaeI	GCCGGC	1 cut(s)	694
NciI	CCSGG	2 cut(s)	455, 456
NcoI	CCATGG	1 cut(s)	589
NdeII	GATC	4 cut(s)	112, 390, 724, 757
NgoMIV	GCCGGC	1 cut(s)	692
NlaIII	CATG	8 cut(s)	151, 293, 299, 383, 414, 452, 593, 767
NmuCI	GTSAC	2 cut(s)	182, 266
NsiI	ATGCAT	1 cut(s)	802
NspI	RCATGY	1 cut(s)	414
PagI	TCATGA	1 cut(s)	763
PciI	ACATGT	1 cut(s)	410
PdiI	GCCGGC	1 cut(s)	694
PfeI	GAWTC	1 cut(s)	836
Ppu21I	YACGTR	1 cut(s)	537
PscI	ACATGT	1 cut(s)	410
PshAI	GACNNNNGTC	1 cut(s)	516
PspPI	GGNCC	1 cut(s)	347
RsaI	GTAC	2 cut(s)	495, 626
RsaNI	GTAC	2 cut(s)	494, 625
RseI	CAYNNNNRTG	2 cut(s)	249, 294
SaqAI	TTAA	1 cut(s)	579
Sau3AI	GATC	4 cut(s)	112, 390, 724, 757
Sau96I	GGNCC	1 cut(s)	347
ScrFI	CCNGG	2 cut(s)	455, 456
SetI	ASST	9 cut(s)	28, 127, 192, 204, 313, 360, 376, 518, 539
SfaNI	GCATC	1 cut(s)	809
SinI	GGWCC	1 cut(s)	347
SmaI	CCCGGG	1 cut(s)	456
SmiMI	CAYNNNNRTG	2 cut(s)	249, 294
SpeI	ACTAGT	1 cut(s)	485
Sse9I	AATT	8 cut(s)	93, 128, 178, 299, 304, 326, 362, 497
SsiI	CCGC	2 cut(s)	350, 461
SspI	AATATT	2 cut(s)	669, 745
SspMI	CTAG	3 cut(s)	486, 677, 755
StyD4I	CCNGG	2 cut(s)	453, 454
StyI	CCWWGG	1 cut(s)	589
TaaI	ACNGT	5 cut(s)	78, 219, 266, 531, 655
TaiI	ACGT	2 cut(s)	360, 539
TaqI	TCGA	2 cut(s)	568, 727
TasI	AATT	8 cut(s)	93, 128, 178, 299, 304, 326, 362, 497
TatI	WGTACW	1 cut(s)	493
TfiI	GAWTC	1 cut(s)	836
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TseFI	GTSAC	2 cut(s)	182, 266
Tsp45I	GTSAC	2 cut(s)	182, 266
TspDTI	ATGAA	9 cut(s)	157, 228, 239, 278, 312, 336, 486, 645, 831
TspMI	CCCGGG	1 cut(s)	454
VpaK11BI	GGWCC	1 cut(s)	347
XapI	RAATTY	1 cut(s)	304
XbaI	TCTAGA	1 cut(s)	676
XceI	RCATGY	1 cut(s)	414
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmaI	CCCGGG	1 cut(s)	454
XmiI	GTMKAC	1 cut(s)	428
XspI	CTAG	3 cut(s)	486, 677, 755
Zsp2I	ATGCAT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.