TdcA1-ORF2 protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 207 |
| AarI | CACCTGC | 1 cut(s) | 844 |
| Acc36I | ACCTGC | 1 cut(s) | 844 |
| AccB1I | GGYRCC | 1 cut(s) | 1498 |
| AccBSI | CCGCTC | 1 cut(s) | 1078 |
| AccI | GTMKAC | 1 cut(s) | 255 |
| AciI | CCGC | 3 cut(s) | 878, 1078, 1488 |
| AclWI | GGATC | 4 cut(s) | 1432, 1445, 1697, 1710 |
| AcoI | YGGCCR | 1 cut(s) | 1147 |
| AcsI | RAATTY | 4 cut(s) | 131, 566, 1297, 1734 |
| AcuI | CTGAAG | 3 cut(s) | 971, 1002, 1017 |
| AfaI | GTAC | 7 cut(s) | 522, 963, 1199, 1411, 1426, 1610, 1927 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1759, 1760 |
| AflII | CTTAAG | 1 cut(s) | 691 |
| AflIII | ACRYGT | 1 cut(s) | 1801 |
| AhlI | ACTAGT | 1 cut(s) | 1100 |
| AjnI | CCWGG | 3 cut(s) | 211, 333, 1501 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1866, 1898 |
| AluBI | AGCT | 7 cut(s) | 118, 316, 724, 732, 1190, 1238, 1566 |
| AluI | AGCT | 7 cut(s) | 118, 316, 724, 732, 1190, 1238, 1566 |
| Alw21I | GWGCWC | 1 cut(s) | 1135 |
| Alw26I | GTCTC | 4 cut(s) | 136, 632, 1049, 1460 |
| Alw44I | GTGCAC | 1 cut(s) | 1131 |
| AlwI | GGATC | 4 cut(s) | 1432, 1445, 1697, 1710 |
| AoxI | GGCC | 3 cut(s) | 536, 899, 1147 |
| ApaLI | GTGCAC | 1 cut(s) | 1131 |
| ApeKI | GCWGC | 1 cut(s) | 1718 |
| ApoI | RAATTY | 4 cut(s) | 131, 566, 1297, 1734 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 402, 434 |
| AspLEI | GCGC | 1 cut(s) | 78 |
| AspS9I | GGNCC | 2 cut(s) | 899, 1391 |
| AsuHPI | GGTGA | 4 cut(s) | 179, 814, 1106, 1526 |
| AvaII | GGWCC | 1 cut(s) | 1391 |
| AxyI | CCTNAGG | 1 cut(s) | 573 |
| BaeGI | GKGCMC | 2 cut(s) | 383, 1135 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 504, 537 |
| BamHI | GGATCC | 2 cut(s) | 1437, 1702 |
| BanI | GGYRCC | 1 cut(s) | 1498 |
| BauI | CACGAG | 1 cut(s) | 1323 |
| BbsI | GAAGAC | 1 cut(s) | 1881 |
| Bbv12I | GWGCWC | 1 cut(s) | 1135 |
| BbvI | GCAGC | 1 cut(s) | 1730 |
| BccI | CCATC | 7 cut(s) | 473, 605, 909, 998, 1082, 1668, 1937 |
| BceAI | ACGGC | 1 cut(s) | 1134 |
| BciT130I | CCWGG | 3 cut(s) | 213, 335, 1503 |
| BciVI | GTATCC | 1 cut(s) | 19 |
| BcoDI | GTCTC | 4 cut(s) | 136, 632, 1049, 1460 |
| BcuI | ACTAGT | 1 cut(s) | 1100 |
| BfaI | CTAG | 1 cut(s) | 1101 |
| BfrI | CTTAAG | 1 cut(s) | 691 |
| BfuAI | ACCTGC | 1 cut(s) | 844 |
| BfuI | GTATCC | 1 cut(s) | 19 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 544 |
| BglII | AGATCT | 1 cut(s) | 618 |
| BisI | GCNGC | 1 cut(s) | 1719 |
| BlpI | GCTNAGC | 1 cut(s) | 1239 |
| BlsI | GCNGC | 1 cut(s) | 1720 |
| Bme1390I | CCNGG | 3 cut(s) | 213, 335, 1503 |
| Bme18I | GGWCC | 1 cut(s) | 1391 |
| BmgT120I | GGNCC | 2 cut(s) | 899, 1391 |
| BmiI | GGNNCC | 4 cut(s) | 988, 1439, 1500, 1704 |
| BmrFI | CCNGG | 3 cut(s) | 213, 335, 1503 |
| BmrI | ACTGGG | 1 cut(s) | 1156 |
| BmsI | GCATC | 2 cut(s) | 700, 880 |
| BmuI | ACTGGG | 1 cut(s) | 1156 |
| BpiI | GAAGAC | 1 cut(s) | 1881 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 133, 165 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1239 |
| BpuEI | CTTGAG | 3 cut(s) | 64, 614, 839 |
| BsaAI | YACGTR | 2 cut(s) | 965, 1937 |
| BsaBI | GATNNNNATC | 2 cut(s) | 228, 1659 |
| BsaI | GGTCTC | 3 cut(s) | 136, 632, 1460 |
| BsaJI | CCNNGG | 1 cut(s) | 98 |
| BsaWI | WCCGGW | 3 cut(s) | 623, 670, 1393 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1759, 1760 |
| Bse1I | ACTGG | 4 cut(s) | 275, 902, 1162, 1923 |
| Bse21I | CCTNAGG | 1 cut(s) | 573 |
| Bse3DI | GCAATG | 4 cut(s) | 393, 554, 1334, 1899 |
| Bse8I | GATNNNNATC | 2 cut(s) | 228, 1659 |
| BseBI | CCWGG | 3 cut(s) | 213, 335, 1503 |
| BseDI | CCNNGG | 1 cut(s) | 98 |
| BseGI | GGATG | 6 cut(s) | 94, 924, 976, 1816, 2001, 2062 |
| BseJI | GATNNNNATC | 2 cut(s) | 228, 1659 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1759, 1760 |
| BseMI | GCAATG | 4 cut(s) | 393, 554, 1334, 1899 |
| BseMII | CTCAG | 4 cut(s) | 211, 564, 1230, 2043 |
| BseNI | ACTGG | 4 cut(s) | 275, 902, 1162, 1923 |
| BseRI | GAGGAG | 2 cut(s) | 61, 138 |
| BseSI | GKGCMC | 2 cut(s) | 383, 1135 |
| BseXI | GCAGC | 1 cut(s) | 1730 |
| BseYI | CCCAGC | 1 cut(s) | 398 |
| BshFI | GGCC | 3 cut(s) | 538, 901, 1149 |
| BshNI | GGYRCC | 1 cut(s) | 1498 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1135 |
| BsiSI | CCGG | 3 cut(s) | 624, 671, 1394 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1759, 1760 |
| BsmAI | GTCTC | 4 cut(s) | 136, 632, 1049, 1460 |
| BsmI | GAATGC | 1 cut(s) | 1832 |
| BsnI | GGCC | 3 cut(s) | 538, 901, 1149 |
| Bso31I | GGTCTC | 3 cut(s) | 136, 632, 1460 |
| Bsp1286I | GDGCHC | 2 cut(s) | 383, 1135 |
| Bsp143I | GATC | 4 cut(s) | 460, 618, 1437, 1702 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1239 |
| Bsp19I | CCATGG | 1 cut(s) | 98 |
| BspACI | CCGC | 3 cut(s) | 878, 1078, 1488 |
| BspANI | GGCC | 3 cut(s) | 538, 901, 1149 |
| BspCNI | CTCAG | 4 cut(s) | 210, 565, 1231, 2044 |
| BspHI | TCATGA | 1 cut(s) | 637 |
| BspLI | GGNNCC | 4 cut(s) | 988, 1439, 1500, 1704 |
| BspMI | ACCTGC | 1 cut(s) | 844 |
| BspPI | GGATC | 4 cut(s) | 1432, 1445, 1697, 1710 |
| BspT107I | GGYRCC | 1 cut(s) | 1498 |
| BspTI | CTTAAG | 1 cut(s) | 691 |
| BspTNI | GGTCTC | 3 cut(s) | 136, 632, 1460 |
| BsrBI | CCGCTC | 1 cut(s) | 1078 |
| BsrDI | GCAATG | 4 cut(s) | 393, 554, 1334, 1899 |
| BsrI | ACTGG | 4 cut(s) | 275, 902, 1162, 1923 |
| BssECI | CCNNGG | 1 cut(s) | 98 |
| BssMI | GATC | 4 cut(s) | 460, 618, 1437, 1702 |
| BssSI | CACGAG | 1 cut(s) | 1323 |
| BssT1I | CCWWGG | 1 cut(s) | 98 |
| Bst2BI | CACGAG | 1 cut(s) | 1323 |
| Bst2UI | CCWGG | 3 cut(s) | 213, 335, 1503 |
| Bst4CI | ACNGT | 8 cut(s) | 418, 562, 1214, 1405, 1429, 1538, 1963, 2069 |
| Bst6I | CTCTTC | 5 cut(s) | 275, 1253, 1458, 1622, 1821 |
| BstAFI | CTTAAG | 1 cut(s) | 691 |
| BstBAI | YACGTR | 2 cut(s) | 965, 1937 |
| BstC8I | GCNNGC | 1 cut(s) | 7 |
| BstDEI | CTNAG | 7 cut(s) | 197, 573, 1239, 1623, 1714, 2052, 2095 |
| BstDSI | CCRYGG | 1 cut(s) | 98 |
| BstF5I | GGATG | 6 cut(s) | 94, 924, 976, 1816, 2001, 2062 |
| BstHHI | GCGC | 1 cut(s) | 78 |
| BstKTI | GATC | 4 cut(s) | 463, 621, 1440, 1705 |
| BstMAI | GTCTC | 4 cut(s) | 136, 632, 1049, 1460 |
| BstMBI | GATC | 4 cut(s) | 460, 618, 1437, 1702 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 378, 535, 544, 877, 1724 |
| BstNI | CCWGG | 3 cut(s) | 213, 335, 1503 |
| BstNSI | RCATGY | 1 cut(s) | 9 |
| BstSCI | CCNGG | 3 cut(s) | 211, 333, 1501 |
| BstSLI | GKGCMC | 2 cut(s) | 383, 1135 |
| BstSNI | TACGTA | 2 cut(s) | 965, 1937 |
| BstV1I | GCAGC | 1 cut(s) | 1730 |
| BstV2I | GAAGAC | 1 cut(s) | 1881 |
| BstX2I | RGATCY | 3 cut(s) | 618, 1437, 1702 |
| BstYI | RGATCY | 3 cut(s) | 618, 1437, 1702 |
| Bsu36I | CCTNAGG | 1 cut(s) | 573 |
| BsuI | GTATCC | 1 cut(s) | 19 |
| BsuRI | GGCC | 3 cut(s) | 538, 901, 1149 |
| BtgI | CCRYGG | 1 cut(s) | 98 |
| BtgZI | GCGATG | 1 cut(s) | 976 |
| BtsCI | GGATG | 6 cut(s) | 94, 924, 976, 1816, 2001, 2062 |
| BtsIMutI | CAGTG | 4 cut(s) | 1169, 1610, 1677, 2074 |
| BveI | ACCTGC | 1 cut(s) | 844 |
| Cac8I | GCNNGC | 1 cut(s) | 7 |
| CciI | TCATGA | 1 cut(s) | 637 |
| CfoI | GCGC | 1 cut(s) | 78 |
| Cfr13I | GGNCC | 2 cut(s) | 899, 1391 |
| Csp6I | GTAC | 7 cut(s) | 521, 962, 1198, 1410, 1425, 1609, 1926 |
| CviQI | GTAC | 7 cut(s) | 521, 962, 1198, 1410, 1425, 1609, 1926 |
| DdeI | CTNAG | 7 cut(s) | 197, 573, 1239, 1623, 1714, 2052, 2095 |
| DpnI | GATC | 4 cut(s) | 462, 620, 1439, 1704 |
| DpnII | GATC | 4 cut(s) | 460, 618, 1437, 1702 |
| EaeI | YGGCCR | 1 cut(s) | 1147 |
| Eam1104I | CTCTTC | 5 cut(s) | 275, 1253, 1458, 1622, 1821 |
| EarI | CTCTTC | 5 cut(s) | 275, 1253, 1458, 1622, 1821 |
| Eco105I | TACGTA | 2 cut(s) | 965, 1937 |
| Eco130I | CCWWGG | 1 cut(s) | 98 |
| Eco31I | GGTCTC | 3 cut(s) | 136, 632, 1460 |
| Eco47I | GGWCC | 1 cut(s) | 1391 |
| Eco57I | CTGAAG | 3 cut(s) | 971, 1002, 1017 |
| Eco81I | CCTNAGG | 1 cut(s) | 573 |
| EcoRII | CCWGG | 3 cut(s) | 211, 333, 1501 |
| EcoT14I | CCWWGG | 1 cut(s) | 98 |
| EcoT22I | ATGCAT | 2 cut(s) | 1336, 1381 |
| ErhI | CCWWGG | 1 cut(s) | 98 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 272, 304 |
| FauI | CCCGC | 1 cut(s) | 1481 |
| FauNDI | CATATG | 2 cut(s) | 362, 1137 |
| FblI | GTMKAC | 1 cut(s) | 255 |
| Fnu4HI | GCNGC | 1 cut(s) | 1719 |
| FokI | GGATG | 6 cut(s) | 81, 931, 963, 1823, 2008, 2069 |
| Fsp4HI | GCNGC | 1 cut(s) | 1719 |
| FspBI | CTAG | 1 cut(s) | 1101 |
| GlaI | GCGC | 1 cut(s) | 77 |
| GluI | GCNGC | 1 cut(s) | 1719 |
| GsaI | CCCAGC | 1 cut(s) | 402 |
| HaeIII | GGCC | 3 cut(s) | 538, 901, 1149 |
| HapII | CCGG | 3 cut(s) | 624, 671, 1394 |
| HhaI | GCGC | 1 cut(s) | 78 |
| Hin6I | GCGC | 1 cut(s) | 76 |
| HinP1I | GCGC | 1 cut(s) | 76 |
| HindIII | AAGCTT | 2 cut(s) | 730, 1564 |
| HinfI | GANTC | 6 cut(s) | 634, 1016, 1108, 1267, 1780, 1844 |
| HpaII | CCGG | 3 cut(s) | 624, 671, 1394 |
| HphI | GGTGA | 4 cut(s) | 179, 814, 1106, 1526 |
| Hpy166II | GTNNAC | 8 cut(s) | 218, 256, 815, 1133, 1363, 1508, 1928, 2001 |
| Hpy188I | TCNGA | 7 cut(s) | 200, 487, 951, 1482, 1785, 2053, 2076 |
| Hpy8I | GTNNAC | 8 cut(s) | 218, 256, 815, 1133, 1363, 1508, 1928, 2001 |
| Hpy99I | CGWCG | 1 cut(s) | 537 |
| HpyAV | CCTTC | 6 cut(s) | 946, 977, 992, 1240, 1340, 1634 |
| HpyCH4III | ACNGT | 8 cut(s) | 418, 562, 1214, 1405, 1429, 1538, 1963, 2069 |
| HpyCH4IV | ACGT | 5 cut(s) | 339, 532, 964, 1803, 1936 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 378, 535, 544, 877, 1724 |
| HpyF3I | CTNAG | 7 cut(s) | 197, 573, 1239, 1623, 1714, 2052, 2095 |
| HpySE526I | ACGT | 5 cut(s) | 339, 532, 964, 1803, 1936 |
| HspAI | GCGC | 1 cut(s) | 76 |
| Kzo9I | GATC | 4 cut(s) | 460, 618, 1437, 1702 |
| LmnI | GCTCC | 2 cut(s) | 115, 992 |
| Lsp1109I | GCAGC | 1 cut(s) | 1730 |
| LweI | GCATC | 2 cut(s) | 700, 880 |
| MaeI | CTAG | 1 cut(s) | 1101 |
| MaeII | ACGT | 5 cut(s) | 339, 532, 964, 1803, 1936 |
| MaeIII | GTNAC | 4 cut(s) | 365, 1514, 1526, 2090 |
| MalI | GATC | 4 cut(s) | 462, 620, 1439, 1704 |
| MbiI | CCGCTC | 1 cut(s) | 1078 |
| MboI | GATC | 4 cut(s) | 460, 618, 1437, 1702 |
| MfeI | CAATTG | 1 cut(s) | 927 |
| MflI | RGATCY | 3 cut(s) | 618, 1437, 1702 |
| MhlI | GDGCHC | 2 cut(s) | 383, 1135 |
| MlyI | GAGTC | 3 cut(s) | 628, 1102, 1276 |
| MmeI | TCCRAC | 3 cut(s) | 279, 1864, 1998 |
| Mph1103I | ATGCAT | 2 cut(s) | 1336, 1381 |
| MspA1I | CMGCKG | 1 cut(s) | 1488 |
| MspCI | CTTAAG | 1 cut(s) | 691 |
| MspI | CCGG | 3 cut(s) | 624, 671, 1394 |
| MspR9I | CCNGG | 3 cut(s) | 213, 335, 1503 |
| MunI | CAATTG | 1 cut(s) | 927 |
| Mva1269I | GAATGC | 1 cut(s) | 1832 |
| MvaI | CCWGG | 3 cut(s) | 213, 335, 1503 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 378, 535, 544, 877, 1724 |
| NcoI | CCATGG | 1 cut(s) | 98 |
| NdeI | CATATG | 2 cut(s) | 362, 1137 |
| NdeII | GATC | 4 cut(s) | 460, 618, 1437, 1702 |
| NlaIV | GGNNCC | 4 cut(s) | 988, 1439, 1500, 1704 |
| NmuCI | GTSAC | 4 cut(s) | 365, 1514, 1526, 2090 |
| NsiI | ATGCAT | 2 cut(s) | 1336, 1381 |
| NspI | RCATGY | 1 cut(s) | 9 |
| PaeI | GCATGC | 1 cut(s) | 9 |
| PagI | TCATGA | 1 cut(s) | 637 |
| PaqCI | CACCTGC | 1 cut(s) | 844 |
| PctI | GAATGC | 1 cut(s) | 1832 |
| PfeI | GAWTC | 3 cut(s) | 1016, 1780, 1844 |
| PflFI | GACNNNGTC | 1 cut(s) | 416 |
| PkrI | GCNGC | 1 cut(s) | 1720 |
| PleI | GAGTC | 3 cut(s) | 628, 1102, 1275 |
| PpsI | GAGTC | 3 cut(s) | 628, 1102, 1275 |
| Ppu21I | YACGTR | 2 cut(s) | 965, 1937 |
| PsiI | TTATAA | 1 cut(s) | 207 |
| Psp6I | CCWGG | 3 cut(s) | 211, 333, 1501 |
| PspFI | CCCAGC | 1 cut(s) | 398 |
| PspGI | CCWGG | 3 cut(s) | 211, 333, 1501 |
| PspN4I | GGNNCC | 4 cut(s) | 988, 1439, 1500, 1704 |
| PspPI | GGNCC | 2 cut(s) | 899, 1391 |
| PsuI | RGATCY | 3 cut(s) | 618, 1437, 1702 |
| PsyI | GACNNNGTC | 1 cut(s) | 416 |
| RsaI | GTAC | 7 cut(s) | 522, 963, 1199, 1411, 1426, 1610, 1927 |
| RsaNI | GTAC | 7 cut(s) | 521, 962, 1198, 1410, 1425, 1609, 1926 |
| SatI | GCNGC | 1 cut(s) | 1719 |
| Sau3AI | GATC | 4 cut(s) | 460, 618, 1437, 1702 |
| Sau96I | GGNCC | 2 cut(s) | 899, 1391 |
| SchI | GAGTC | 3 cut(s) | 628, 1102, 1276 |
| ScrFI | CCNGG | 3 cut(s) | 213, 335, 1503 |
| SduI | GDGCHC | 2 cut(s) | 383, 1135 |
| SfaNI | GCATC | 2 cut(s) | 700, 880 |
| SinI | GGWCC | 1 cut(s) | 1391 |
| SmlI | CTYRAG | 4 cut(s) | 43, 629, 691, 818 |
| SmoI | CTYRAG | 4 cut(s) | 43, 629, 691, 818 |
| SnaBI | TACGTA | 2 cut(s) | 965, 1937 |
| SpeI | ACTAGT | 1 cut(s) | 1100 |
| SphI | GCATGC | 1 cut(s) | 9 |
| SsiI | CCGC | 3 cut(s) | 878, 1078, 1488 |
| SspI | AATATT | 3 cut(s) | 592, 1254, 1912 |
| SspMI | CTAG | 1 cut(s) | 1101 |
| StyD4I | CCNGG | 3 cut(s) | 211, 333, 1501 |
| StyI | CCWWGG | 1 cut(s) | 98 |
| TaaI | ACNGT | 8 cut(s) | 418, 562, 1214, 1405, 1429, 1538, 1963, 2069 |
| TaiI | ACGT | 5 cut(s) | 342, 535, 967, 1806, 1939 |
| TaqI | TCGA | 3 cut(s) | 598, 682, 1651 |
| TatI | WGTACW | 3 cut(s) | 1409, 1424, 1925 |
| TfiI | GAWTC | 3 cut(s) | 1016, 1780, 1844 |
| TscAI | CASTG | 4 cut(s) | 1169, 1610, 1684, 2074 |
| TseFI | GTSAC | 4 cut(s) | 365, 1514, 1526, 2090 |
| TseI | GCWGC | 1 cut(s) | 1718 |
| Tsp45I | GTSAC | 4 cut(s) | 365, 1514, 1526, 2090 |
| TspDTI | ATGAA | 5 cut(s) | 144, 1233, 1839, 1910, 2008 |
| TspGWI | ACGGA | 2 cut(s) | 495, 1430 |
| TspRI | CASTG | 4 cut(s) | 1169, 1610, 1684, 2074 |
| Tth111I | GACNNNGTC | 1 cut(s) | 416 |
| Vha464I | CTTAAG | 1 cut(s) | 691 |
| VneI | GTGCAC | 1 cut(s) | 1131 |
| VpaK11BI | GGWCC | 1 cut(s) | 1391 |
| XapI | RAATTY | 4 cut(s) | 131, 566, 1297, 1734 |
| XceI | RCATGY | 1 cut(s) | 9 |
| XmiI | GTMKAC | 1 cut(s) | 255 |
| XspI | CTAG | 1 cut(s) | 1101 |
| Zsp2I | ATGCAT | 2 cut(s) | 1336, 1381 |