Rmu_sc0002804.1_g000004

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002804.1
OG0001541
Physical Location & Seq
Reverse (-)
15295 .. 16083
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002804.1_g000004.1.cds

Sequence Viewer

Length: 678 bp
atgggtaatgggaaaccccgcccctgcccccgcacctgtgatggggaaccccgcccccacccctgcttgacaaatgtagggaaaacccgcaggtacccctcccccgccccccgtttgcccattcctaggtcccataattgtgaaccttgcaccttttatgggagtctgttgaacgttaaaaaccaatggtaccaacatgatccttatgtgctagcaaaacaagcccataaggtgttttatcttgatgacctgaaattggggcatccttggaaagttgtccagaaaattcaatataggcacttgtgggatgttccagaaagagaagaagacgaagatcttgtagaccatgataatgatcctggcgtcaaggacgatgacgctaatgtatgggaggtctattgccccacaataaaggtctattgggaggtttattattcatctattggggggggggggaatagaggtttattgggagacaatataggtctatttgggggcaataaacttttcccgcgacctatgagatctcggacgacctccagcgaggtttccagagaagttcggagtccggcggccggtgaccggactcgggcaaagtctcctatggcttctctctcttccattttctctccctctcactcactctctctctctctctctctctctctctctatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

225

Amino Acids

25.38

Weight (kDa)

8.7

Isoelectric Point (pI)

49.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 81
Acc65I GGTACC 2 cut(s) 93, 189
AccB1I GGYRCC 2 cut(s) 93, 189
AccI GTMKAC 1 cut(s) 342
AccII CGCG 1 cut(s) 514
AciI CCGC 7 cut(s) 19, 31, 52, 88, 105, 512, 572
AclI AACGTT 1 cut(s) 174
AclWI GGATC 2 cut(s) 194, 350
AcoI YGGCCR 1 cut(s) 573
AcsI RAATTY 1 cut(s) 285
AcyI GRCGYC 1 cut(s) 363
AfaI GTAC 2 cut(s) 95, 191
AfiI CCNNNNNNNGG 7 cut(s) 42, 126, 159, 256, 575, 582, 589
AgsI TTSAA 2 cut(s) 172, 290
AjnI CCWGG 1 cut(s) 358
Alw26I GTCTC 2 cut(s) 468, 603
AlwI GGATC 2 cut(s) 194, 350
Ama87I CYCGRG 1 cut(s) 588
AoxI GGCC 1 cut(s) 573
ApoI RAATTY 1 cut(s) 285
Asp718I GGTACC 2 cut(s) 93, 189
AspA2I CCTAGG 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 590
AsuNHI GCTAGC 1 cut(s) 211
AvaI CYCGRG 1 cut(s) 588
AvaII GGWCC 1 cut(s) 129
AvrII CCTAGG 1 cut(s) 125
BanI GGYRCC 2 cut(s) 93, 189
BbsI GAAGAC 1 cut(s) 333
BccI CCATC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 360
BcoDI GTCTC 2 cut(s) 468, 603
BfaI CTAG 2 cut(s) 126, 212
BfuAI ACCTGC 1 cut(s) 81
BglII AGATCT 2 cut(s) 334, 524
BisI GCNGC 1 cut(s) 573
BlnI CCTAGG 1 cut(s) 125
BlsI GCNGC 1 cut(s) 574
Bme1390I CCNGG 1 cut(s) 360
Bme18I GGWCC 1 cut(s) 129
BmeT110I CYCGRG 1 cut(s) 588
BmgT120I GGNCC 1 cut(s) 129
BmiI GGNNCC 4 cut(s) 48, 95, 131, 191
BmrFI CCNGG 1 cut(s) 360
BmsI GCATC 1 cut(s) 271
BmtI GCTAGC 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 333
BpmI CTGGAG 1 cut(s) 523
BsaBI GATNNNNATC 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 363
BsaJI CCNNGG 2 cut(s) 125, 266
BsaWI WCCGGW 1 cut(s) 582
Bsc4I CCNNNNNNNGG 7 cut(s) 42, 126, 159, 256, 575, 582, 589
Bse118I RCCGGY 1 cut(s) 575
Bse8I GATNNNNATC 1 cut(s) 354
BseBI CCWGG 1 cut(s) 360
BseDI CCNNGG 2 cut(s) 125, 266
BseGI GGATG 2 cut(s) 262, 313
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 7 cut(s) 42, 126, 159, 256, 575, 582, 589
BseX3I CGGCCG 1 cut(s) 573
Bsh1236I CGCG 1 cut(s) 514
Bsh1285I CGRYCG 1 cut(s) 576
BshFI GGCC 1 cut(s) 575
BshNI GGYRCC 2 cut(s) 93, 189
BsiEI CGRYCG 1 cut(s) 576
BsiHKCI CYCGRG 1 cut(s) 588
BsiSI CCGG 3 cut(s) 569, 576, 583
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 7 cut(s) 42, 126, 159, 256, 575, 582, 589
BsmAI GTCTC 2 cut(s) 468, 603
BsmFI GGGAC 1 cut(s) 115
BsnI GGCC 1 cut(s) 575
BsoBI CYCGRG 1 cut(s) 588
Bsp143I GATC 4 cut(s) 199, 334, 355, 524
BspACI CCGC 7 cut(s) 19, 31, 52, 88, 105, 512, 572
BspANI GGCC 1 cut(s) 575
BspFNI CGCG 1 cut(s) 514
BspLI GGNNCC 4 cut(s) 48, 95, 131, 191
BspMI ACCTGC 1 cut(s) 81
BspOI GCTAGC 1 cut(s) 215
BspPI GGATC 2 cut(s) 194, 350
BspT107I GGYRCC 2 cut(s) 93, 189
BsrFI RCCGGY 1 cut(s) 575
BssAI RCCGGY 1 cut(s) 575
BssECI CCNNGG 2 cut(s) 125, 266
BssMI GATC 4 cut(s) 199, 334, 355, 524
BssNI GRCGYC 1 cut(s) 363
BssT1I CCWWGG 2 cut(s) 125, 266
Bst2UI CCWGG 1 cut(s) 360
Bst6I CTCTTC 1 cut(s) 622
BstACI GRCGYC 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 213
BstEII GGTNACC 1 cut(s) 578
BstF5I GGATG 2 cut(s) 262, 313
BstFNI CGCG 1 cut(s) 514
BstKTI GATC 4 cut(s) 202, 337, 358, 527
BstMAI GTCTC 2 cut(s) 468, 603
BstMBI GATC 4 cut(s) 199, 334, 355, 524
BstMCI CGRYCG 1 cut(s) 576
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNI CCWGG 1 cut(s) 360
BstPI GGTNACC 1 cut(s) 578
BstSCI CCNGG 1 cut(s) 358
BstUI CGCG 1 cut(s) 514
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 2 cut(s) 334, 524
BstYI RGATCY 2 cut(s) 334, 524
BstZI CGGCCG 1 cut(s) 573
BsuRI GGCC 1 cut(s) 575
BtsCI GGATG 2 cut(s) 262, 313
BveI ACCTGC 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 213
Cfr10I RCCGGY 1 cut(s) 575
Cfr13I GGNCC 1 cut(s) 129
CseI GACGC 2 cut(s) 352, 386
Csp6I GTAC 2 cut(s) 94, 190
CviAII CATG 2 cut(s) 197, 347
CviJI RGCY 3 cut(s) 224, 575, 608
CviKI_1 RGCY 3 cut(s) 224, 575, 608
CviQI GTAC 2 cut(s) 94, 190
DpnI GATC 4 cut(s) 201, 336, 357, 526
DpnII GATC 4 cut(s) 199, 334, 355, 524
EaeI YGGCCR 1 cut(s) 573
EagI CGGCCG 1 cut(s) 573
Eam1104I CTCTTC 1 cut(s) 622
EarI CTCTTC 1 cut(s) 622
EclXI CGGCCG 1 cut(s) 573
Eco130I CCWWGG 2 cut(s) 125, 266
Eco47I GGWCC 1 cut(s) 129
Eco52I CGGCCG 1 cut(s) 573
Eco88I CYCGRG 1 cut(s) 588
Eco91I GGTNACC 1 cut(s) 578
EcoO109I RGGNCCY 1 cut(s) 129
EcoO65I GGTNACC 1 cut(s) 578
EcoRII CCWGG 1 cut(s) 358
EcoT14I CCWWGG 2 cut(s) 125, 266
ErhI CCWWGG 2 cut(s) 125, 266
FaeI CATG 2 cut(s) 200, 350
FaqI GGGAC 1 cut(s) 115
FatI CATG 2 cut(s) 196, 346
FauI CCCGC 6 cut(s) 26, 38, 59, 95, 112, 519
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 1 cut(s) 573
FokI GGATG 2 cut(s) 249, 320
Fsp4HI GCNGC 1 cut(s) 573
FspBI CTAG 2 cut(s) 126, 212
GluI GCNGC 1 cut(s) 573
GsuI CTGGAG 1 cut(s) 523
HaeIII GGCC 1 cut(s) 575
HapII CCGG 3 cut(s) 569, 576, 583
HgaI GACGC 2 cut(s) 352, 386
Hin1I GRCGYC 1 cut(s) 363
Hin1II CATG 2 cut(s) 200, 350
HinfI GANTC 3 cut(s) 163, 565, 586
HpaII CCGG 3 cut(s) 569, 576, 583
HphI GGTGA 1 cut(s) 590
Hpy166II GTNNAC 2 cut(s) 143, 343
Hpy188I TCNGA 2 cut(s) 531, 564
Hpy188III TCNNGA 4 cut(s) 242, 280, 314, 552
Hpy8I GTNNAC 2 cut(s) 143, 343
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpySE526I ACGT 1 cut(s) 174
Hsp92I GRCGYC 1 cut(s) 363
Hsp92II CATG 2 cut(s) 200, 350
KpnI GGTACC 2 cut(s) 97, 193
Kzo9I GATC 4 cut(s) 199, 334, 355, 524
LweI GCATC 1 cut(s) 271
MaeI CTAG 2 cut(s) 126, 212
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 578
MalI GATC 4 cut(s) 201, 336, 357, 526
MboI GATC 4 cut(s) 199, 334, 355, 524
MboII GAAGA 4 cut(s) 335, 338, 344, 609
MflI RGATCY 2 cut(s) 334, 524
MluCI AATT 3 cut(s) 136, 254, 285
MlyI GAGTC 3 cut(s) 172, 574, 580
MnlI CCTC 7 cut(s) 109, 385, 418, 455, 538, 547, 643
MseI TTAA 1 cut(s) 177
MslI CAYNNNNRTG 2 cut(s) 138, 351
MspI CCGG 3 cut(s) 569, 576, 583
MspR9I CCNGG 1 cut(s) 360
MvaI CCWGG 1 cut(s) 360
MvnI CGCG 1 cut(s) 514
MwoI GCNNNNNNNGC 1 cut(s) 221
NdeII GATC 4 cut(s) 199, 334, 355, 524
NheI GCTAGC 1 cut(s) 211
NlaIII CATG 2 cut(s) 200, 350
NlaIV GGNNCC 4 cut(s) 48, 95, 131, 191
NmuCI GTSAC 1 cut(s) 578
PkrI GCNGC 1 cut(s) 574
PleI GAGTC 3 cut(s) 171, 573, 580
PpsI GAGTC 3 cut(s) 171, 573, 580
PpuMI RGGWCCY 1 cut(s) 129
Psp1406I AACGTT 1 cut(s) 174
Psp5II RGGWCCY 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 358
PspEI GGTNACC 1 cut(s) 578
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 4 cut(s) 48, 95, 131, 191
PspPI GGNCC 1 cut(s) 129
PspPPI RGGWCCY 1 cut(s) 129
PsuI RGATCY 2 cut(s) 334, 524
RsaI GTAC 2 cut(s) 95, 191
RsaNI GTAC 2 cut(s) 94, 190
RseI CAYNNNNRTG 2 cut(s) 138, 351
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 1 cut(s) 573
Sau3AI GATC 4 cut(s) 199, 334, 355, 524
Sau96I GGNCC 1 cut(s) 129
SchI GAGTC 3 cut(s) 172, 574, 580
ScrFI CCNGG 1 cut(s) 360
SfaNI GCATC 1 cut(s) 271
SinI GGWCC 1 cut(s) 129
SmiMI CAYNNNNRTG 2 cut(s) 138, 351
Sse9I AATT 3 cut(s) 136, 254, 285
SsiI CCGC 7 cut(s) 19, 31, 52, 88, 105, 512, 572
SspMI CTAG 2 cut(s) 126, 212
StyD4I CCNGG 1 cut(s) 358
StyI CCWWGG 2 cut(s) 125, 266
TaiI ACGT 1 cut(s) 177
TasI AATT 3 cut(s) 136, 254, 285
TauI GCSGC 1 cut(s) 575
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TseFI GTSAC 1 cut(s) 578
Tsp45I GTSAC 1 cut(s) 578
TspDTI ATGAA 1 cut(s) 426
VpaK11BI GGWCC 1 cut(s) 129
XapI RAATTY 1 cut(s) 285
XmaJI CCTAGG 1 cut(s) 125
XmiI GTMKAC 1 cut(s) 342
XspI CTAG 2 cut(s) 126, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.