RchiOBHm_Chr5g0040561

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001541
Physical Location & Seq
Reverse (-)
35220389 .. 35225216
4828 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31906

Sequence Viewer

Length: 684 bp
ATGGCTGAACAGATTGTTGGAGCCAATGATGTTGTGCATGATATTTTGAATGATGCATTCCCACCTACTGACATGGATGATATAGCTCAAGATCTAGAGGAGGATAAGATACAAGGAGGCAATGAAGATGTGATGGATAATCATGGATCTAATGGGATGAGAAGCGATGCTGATCAGTATAAGAAACTAATGGCTGAAGCTGAGCGAGAGTTTTTCCCTGGTTGTGATGGATTTTCAGTTTTAACTGCCATGGTTTTGTTCATGCATATCAAAGTCCTTAATCATTGGACTAACAAGTCTTTTGATATGTTTCTAGAGGTGATGAATCGAGTGTGTCCTAAGCCTAATAACATTCCCTCCTCATTTTACGCTGCGAACAAGATGTTGAAAGGTTTGGGCTTAGGTTATGAGAAGATAGATGCTTGCAAGTATGATTGTGCTCTGTTTTACAAAGAGCATCAGGATAAACAGTTATGTCCAGAATGTAGTGAACCAAGGTATAAATATAGAGGTTCTAATTCTGATCTGGGTAAAAAGAAGAAGATTCCTCAAAAAGTTCTACGGTATTTCCCACTAAAACCGAGGCTGAAAAGACTATTTATGTCAAACGATACAGCTGCTAATATGAGGTGGCATCATGATAAGCGAGCTGATGAAGAAGGCAAGATGAGGCATCCAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

227

Amino Acids

26.16

Weight (kDa)

6.45

Isoelectric Point (pI)

46.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 295
AclWI GGATC 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 216
AgsI TTSAA 2 cut(s) 49, 388
AjnI CCWGG 1 cut(s) 217
AjuI GAANNNNNNNTTGG 1 cut(s) 32
AluBI AGCT 4 cut(s) 86, 200, 617, 650
AluI AGCT 4 cut(s) 86, 200, 617, 650
Alw21I GWGCWC 1 cut(s) 442
AlwI GGATC 1 cut(s) 154
ApeKI GCWGC 2 cut(s) 371, 617
AsuHPI GGTGA 1 cut(s) 331
Bbv12I GWGCWC 1 cut(s) 442
BbvI GCAGC 2 cut(s) 358, 604
BccI CCATC 2 cut(s) 127, 221
BcgI CGANNNNNNTGC 2 cut(s) 599, 633
BciT130I CCWGG 1 cut(s) 219
BclI TGATCA 1 cut(s) 172
BfaI CTAG 2 cut(s) 95, 314
BglII AGATCT 1 cut(s) 91
BisI GCNGC 2 cut(s) 372, 618
BlpI GCTNAGC 1 cut(s) 201
BlsI GCNGC 2 cut(s) 373, 619
Bme1390I CCNGG 1 cut(s) 219
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 219
BmsI GCATC 5 cut(s) 43, 157, 409, 466, 643
Bpu10I CCTNAGC 2 cut(s) 339, 400
Bpu1102I GCTNAGC 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 72
BsaBI GATNNNNATC 1 cut(s) 171
BsaJI CCNNGG 4 cut(s) 217, 249, 494, 581
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bse3DI GCAATG 1 cut(s) 127
Bse8I GATNNNNATC 1 cut(s) 171
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 4 cut(s) 217, 249, 494, 581
BseGI GGATG 3 cut(s) 82, 162, 673
BseJI GATNNNNATC 1 cut(s) 171
BseMI GCAATG 1 cut(s) 127
BseMII CTCAG 1 cut(s) 192
BseRI GAGGAG 2 cut(s) 113, 349
BseXI GCAGC 2 cut(s) 358, 604
BsiHKAI GWGCWC 1 cut(s) 442
BsmI GAATGC 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 442
Bsp143I GATC 4 cut(s) 91, 146, 172, 523
Bsp1720I GCTNAGC 1 cut(s) 201
Bsp19I CCATGG 1 cut(s) 249
BspCNI CTCAG 1 cut(s) 193
BspHI TCATGA 1 cut(s) 637
BspLI GGNNCC 1 cut(s) 22
BspPI GGATC 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 127
BssECI CCNNGG 4 cut(s) 217, 249, 494, 581
BssMI GATC 4 cut(s) 91, 146, 172, 523
BssT1I CCWWGG 2 cut(s) 249, 494
Bst2UI CCWGG 1 cut(s) 219
Bst4CI ACNGT 2 cut(s) 471, 564
BstC8I GCNNGC 2 cut(s) 424, 648
BstDEI CTNAG 4 cut(s) 201, 339, 400, 681
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 3 cut(s) 82, 162, 673
BstKTI GATC 4 cut(s) 94, 149, 175, 526
BstMBI GATC 4 cut(s) 91, 146, 172, 523
BstNI CCWGG 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 217
BstV1I GCAGC 2 cut(s) 358, 604
BstX2I RGATCY 2 cut(s) 91, 146
BstYI RGATCY 2 cut(s) 91, 146
BtgI CCRYGG 1 cut(s) 249
BtgZI GCGATG 1 cut(s) 180
BtsCI GGATG 3 cut(s) 82, 162, 673
Cac8I GCNNGC 2 cut(s) 424, 648
CciI TCATGA 1 cut(s) 637
CviAII CATG 6 cut(s) 38, 73, 143, 250, 262, 638
DdeI CTNAG 4 cut(s) 201, 339, 400, 681
DpnI GATC 4 cut(s) 93, 148, 174, 525
DpnII GATC 4 cut(s) 91, 146, 172, 523
DrdI GACNNNNNNGTC 1 cut(s) 295
DseDI GACNNNNNNGTC 1 cut(s) 295
Eco130I CCWWGG 2 cut(s) 249, 494
Eco57I CTGAAG 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 217
EcoT14I CCWWGG 2 cut(s) 249, 494
EcoT22I ATGCAT 2 cut(s) 58, 267
ErhI CCWWGG 2 cut(s) 249, 494
FaeI CATG 6 cut(s) 41, 76, 146, 253, 265, 641
FatI CATG 6 cut(s) 37, 72, 142, 249, 261, 637
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 2 cut(s) 372, 618
FokI GGATG 3 cut(s) 89, 169, 660
Fsp4HI GCNGC 2 cut(s) 372, 618
FspBI CTAG 2 cut(s) 95, 314
GluI GCNGC 2 cut(s) 372, 618
Hin1II CATG 6 cut(s) 41, 76, 146, 253, 265, 641
HinfI GANTC 2 cut(s) 325, 544
HphI GGTGA 1 cut(s) 331
Hpy166II GTNNAC 1 cut(s) 491
Hpy188I TCNGA 1 cut(s) 523
Hpy188III TCNNGA 6 cut(s) 89, 95, 314, 461, 479, 638
Hpy8I GTNNAC 1 cut(s) 491
HpyAV CCTTC 1 cut(s) 653
HpyCH4III ACNGT 2 cut(s) 471, 564
HpyCH4V TGCA 4 cut(s) 37, 56, 265, 426
HpyF3I CTNAG 4 cut(s) 201, 339, 400, 681
Hsp92II CATG 6 cut(s) 41, 76, 146, 253, 265, 641
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 4 cut(s) 91, 146, 172, 523
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 5 cut(s) 204, 231, 446, 492, 512
Lsp1109I GCAGC 2 cut(s) 358, 604
LweI GCATC 5 cut(s) 43, 157, 409, 466, 643
MaeI CTAG 2 cut(s) 95, 314
MalI GATC 4 cut(s) 93, 148, 174, 525
MboI GATC 4 cut(s) 91, 146, 172, 523
MboII GAAGA 5 cut(s) 137, 424, 550, 553, 668
MflI RGATCY 2 cut(s) 91, 146
MhlI GDGCHC 1 cut(s) 442
MluCI AATT 1 cut(s) 517
Mph1103I ATGCAT 2 cut(s) 58, 267
MseI TTAA 2 cut(s) 242, 279
MspA1I CMGCKG 1 cut(s) 617
MspR9I CCNGG 1 cut(s) 219
Mva1269I GAATGC 1 cut(s) 56
MvaI CCWGG 1 cut(s) 219
NcoI CCATGG 1 cut(s) 249
NdeII GATC 4 cut(s) 91, 146, 172, 523
NlaIII CATG 6 cut(s) 41, 76, 146, 253, 265, 641
NlaIV GGNNCC 1 cut(s) 22
NsiI ATGCAT 2 cut(s) 58, 267
PagI TCATGA 1 cut(s) 637
PctI GAATGC 1 cut(s) 56
PfeI GAWTC 2 cut(s) 325, 544
PkrI GCNGC 2 cut(s) 373, 619
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 22
PsuI RGATCY 2 cut(s) 91, 146
PvuII CAGCTG 1 cut(s) 617
SaqAI TTAA 2 cut(s) 242, 279
SatI GCNGC 2 cut(s) 372, 618
Sau3AI GATC 4 cut(s) 91, 146, 172, 523
ScrFI CCNGG 1 cut(s) 219
SduI GDGCHC 1 cut(s) 442
SfaNI GCATC 5 cut(s) 43, 157, 409, 466, 643
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
Sse9I AATT 1 cut(s) 517
SspMI CTAG 2 cut(s) 95, 314
StyD4I CCNGG 1 cut(s) 217
StyI CCWWGG 2 cut(s) 249, 494
TaaI ACNGT 2 cut(s) 471, 564
TaqI TCGA 1 cut(s) 328
TasI AATT 1 cut(s) 517
TfiI GAWTC 2 cut(s) 325, 544
Tru1I TTAA 2 cut(s) 242, 279
Tru9I TTAA 2 cut(s) 242, 279
TseI GCWGC 2 cut(s) 371, 617
TspDTI ATGAA 4 cut(s) 138, 250, 338, 669
XbaI TCTAGA 2 cut(s) 94, 313
XspI CTAG 2 cut(s) 95, 314
Zsp2I ATGCAT 2 cut(s) 58, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.