Rmu_sc0001598.1_g000015

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001598.1
OG0001541
Physical Location & Seq
Reverse (-)
70311 .. 71119
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001598.1_g000015.1.cds

Sequence Viewer

Length: 576 bp
atggaagagtttcaacaatggtttctaagttgtgctaagacattatatgatgaaggattgatttctgaagagatttattcattagcacatggtgcagacccgcgcagtgtccagtatacatggtgcatggcaaatgatatttggtggtccgtcaaatggattgagcaataccacaccacaaaggatagtggtgttatgatgattgggtcccataatggtgaaccttgcaccttttatgggagtctgaagattcaatataggcacttgtgggatgttccagaaagagaagaagatgaagatcttgtagactgcgataatgaccctggtgatgaggacgatgacgctaatgtatgggaggttgacgtagaagatgatgaaactagtacatctttgcgcatacatgatgtggaacctgaaactattatcatcaacaacacaaataaagaaaagaatgcagtagatgacaatgattttattgacgatgattctacggatgatgatcttatgttggagcatactagagctcttggtgaagaagaattactgggtgatcatagcgacacaaatagtgactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

191

Amino Acids

22.09

Weight (kDa)

4.05

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 395
AccI GTMKAC 2 cut(s) 116, 306
AccII CGCG 1 cut(s) 103
AciI CCGC 1 cut(s) 101
AcuI CTGAAG 2 cut(s) 87, 266
AdeI CACNNNGTG 1 cut(s) 92
AfaI GTAC 1 cut(s) 385
AfiI CCNNNNNNNGG 2 cut(s) 156, 237
AgsI TTSAA 2 cut(s) 14, 254
AhlI ACTAGT 1 cut(s) 380
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 1 cut(s) 524
AluI AGCT 1 cut(s) 524
Alw21I GWGCWC 1 cut(s) 526
Asp700I GAANNNNTTC 1 cut(s) 9
AspLEI GCGC 2 cut(s) 105, 396
AspS9I GGNCC 2 cut(s) 147, 207
AsuHPI GGTGA 4 cut(s) 230, 338, 542, 560
AvaII GGWCC 2 cut(s) 147, 207
BanII GRGCYC 1 cut(s) 526
BarI GAAGNNNNNNTAC 2 cut(s) 525, 557
Bbv12I GWGCWC 1 cut(s) 526
BciT130I CCWGG 1 cut(s) 324
BclI TGATCA 1 cut(s) 550
BcuI ACTAGT 1 cut(s) 380
BfaI CTAG 2 cut(s) 381, 519
BglII AGATCT 1 cut(s) 298
Bme1390I CCNGG 1 cut(s) 324
Bme18I GGWCC 2 cut(s) 147, 207
BmgT120I GGNCC 2 cut(s) 147, 207
BmiI GGNNCC 3 cut(s) 208, 209, 411
BmrFI CCNGG 1 cut(s) 324
BmrI ACTGGG 1 cut(s) 554
BmuI ACTGGG 1 cut(s) 554
BsaBI GATNNNNATC 2 cut(s) 297, 498
BsaJI CCNNGG 1 cut(s) 322
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 237
Bse1I ACTGG 2 cut(s) 112, 549
Bse8I GATNNNNATC 2 cut(s) 297, 498
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 322
BseGI GGATG 2 cut(s) 277, 499
BseJI GATNNNNATC 2 cut(s) 297, 498
BseLI CCNNNNNNNGG 2 cut(s) 156, 237
BseNI ACTGG 2 cut(s) 112, 549
BsgI GTGCAG 1 cut(s) 114
Bsh1236I CGCG 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 526
BslFI GGGAC 1 cut(s) 193
BslI CCNNNNNNNGG 2 cut(s) 156, 237
BsmFI GGGAC 1 cut(s) 193
BsmI GAATGC 1 cut(s) 457
Bsp1286I GDGCHC 1 cut(s) 526
Bsp143I GATC 3 cut(s) 298, 499, 550
BspACI CCGC 1 cut(s) 101
BspFNI CGCG 1 cut(s) 103
BspLI GGNNCC 3 cut(s) 208, 209, 411
BsrI ACTGG 2 cut(s) 112, 549
BssECI CCNNGG 1 cut(s) 322
BssMI GATC 3 cut(s) 298, 499, 550
BssNAI GTATAC 1 cut(s) 117
Bst1107I GTATAC 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 324
Bst6I CTCTTC 1 cut(s) 63
BstAPI GCANNNNNTGC 1 cut(s) 92
BstDEI CTNAG 2 cut(s) 26, 36
BstF5I GGATG 2 cut(s) 277, 499
BstFNI CGCG 1 cut(s) 103
BstHHI GCGC 2 cut(s) 105, 396
BstKTI GATC 3 cut(s) 301, 502, 553
BstMBI GATC 3 cut(s) 298, 499, 550
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 322
BstUI CGCG 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BstZ17I GTATAC 1 cut(s) 117
BtsCI GGATG 2 cut(s) 277, 499
BtsI GCAGTG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 112
CfoI GCGC 2 cut(s) 105, 396
Cfr13I GGNCC 2 cut(s) 147, 207
CseI GACGC 1 cut(s) 350
Csp6I GTAC 1 cut(s) 384
CviAII CATG 4 cut(s) 89, 120, 127, 401
CviJI RGCY 1 cut(s) 524
CviKI_1 RGCY 1 cut(s) 524
CviQI GTAC 1 cut(s) 384
DdeI CTNAG 2 cut(s) 26, 36
DpnI GATC 3 cut(s) 300, 501, 552
DpnII GATC 3 cut(s) 298, 499, 550
DraIII CACNNNGTG 1 cut(s) 92
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Ecl136II GAGCTC 1 cut(s) 524
Eco24I GRGCYC 1 cut(s) 526
Eco47I GGWCC 2 cut(s) 147, 207
Eco53kI GAGCTC 1 cut(s) 524
Eco57I CTGAAG 2 cut(s) 87, 266
EcoICRI GAGCTC 1 cut(s) 524
EcoO109I RGGNCCY 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 526
FaeI CATG 4 cut(s) 92, 123, 130, 404
FaqI GGGAC 1 cut(s) 193
FatI CATG 4 cut(s) 88, 119, 126, 400
FauI CCCGC 1 cut(s) 108
FbaI TGATCA 1 cut(s) 550
FblI GTMKAC 2 cut(s) 116, 306
FokI GGATG 2 cut(s) 284, 506
FriOI GRGCYC 1 cut(s) 526
FspBI CTAG 2 cut(s) 381, 519
FspI TGCGCA 1 cut(s) 395
GlaI GCGC 2 cut(s) 104, 395
HgaI GACGC 1 cut(s) 350
HhaI GCGC 2 cut(s) 105, 396
Hin1II CATG 4 cut(s) 92, 123, 130, 404
Hin6I GCGC 2 cut(s) 103, 394
HinP1I GCGC 2 cut(s) 103, 394
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HinfI GANTC 3 cut(s) 241, 250, 485
HphI GGTGA 4 cut(s) 230, 338, 542, 560
Hpy166II GTNNAC 4 cut(s) 117, 221, 307, 361
Hpy188I TCNGA 2 cut(s) 67, 246
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 4 cut(s) 117, 221, 307, 361
HpyAV CCTTC 1 cut(s) 47
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 4 cut(s) 95, 126, 228, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 26, 36
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 4 cut(s) 92, 123, 130, 404
HspAI GCGC 2 cut(s) 103, 394
KflI GGGWCCC 1 cut(s) 207
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 3 cut(s) 298, 499, 550
LmnI GCTCC 1 cut(s) 511
LpnPI CCDG 6 cut(s) 125, 291, 309, 336, 426, 530
MaeI CTAG 2 cut(s) 381, 519
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 1 cut(s) 569
MalI GATC 3 cut(s) 300, 501, 552
MboI GATC 3 cut(s) 298, 499, 550
MboII GAAGA 9 cut(s) 17, 80, 259, 299, 302, 308, 380, 545, 548
MflI RGATCY 1 cut(s) 298
MhlI GDGCHC 1 cut(s) 526
MluCI AATT 1 cut(s) 539
MlyI GAGTC 1 cut(s) 250
MmeI TCCRAC 1 cut(s) 489
MnlI CCTC 2 cut(s) 325, 349
MroXI GAANNNNTTC 1 cut(s) 9
MslI CAYNNNNRTG 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 324
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 1 cut(s) 324
MvnI CGCG 1 cut(s) 103
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 3 cut(s) 298, 499, 550
NlaIII CATG 4 cut(s) 92, 123, 130, 404
NlaIV GGNNCC 3 cut(s) 208, 209, 411
NmuCI GTSAC 1 cut(s) 569
NsbI TGCGCA 1 cut(s) 395
PctI GAATGC 1 cut(s) 457
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 2 cut(s) 250, 485
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
PpuMI RGGWCCY 1 cut(s) 207
Psp124BI GAGCTC 1 cut(s) 526
Psp5II RGGWCCY 1 cut(s) 207
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 3 cut(s) 208, 209, 411
PspPI GGNCC 2 cut(s) 147, 207
PspPPI RGGWCCY 1 cut(s) 207
PsuI RGATCY 1 cut(s) 298
RsaI GTAC 1 cut(s) 385
RsaNI GTAC 1 cut(s) 384
RseI CAYNNNNRTG 1 cut(s) 216
SacI GAGCTC 1 cut(s) 526
Sau3AI GATC 3 cut(s) 298, 499, 550
Sau96I GGNCC 2 cut(s) 147, 207
SchI GAGTC 1 cut(s) 250
ScrFI CCNGG 1 cut(s) 324
SduI GDGCHC 1 cut(s) 526
SetI ASST 6 cut(s) 226, 233, 360, 366, 415, 526
SinI GGWCC 2 cut(s) 147, 207
SmiMI CAYNNNNRTG 1 cut(s) 216
SpeI ACTAGT 1 cut(s) 380
Sse9I AATT 1 cut(s) 539
SsiI CCGC 1 cut(s) 101
SspMI CTAG 2 cut(s) 381, 519
SstI GAGCTC 1 cut(s) 526
StyD4I CCNGG 1 cut(s) 322
TaiI ACGT 1 cut(s) 366
TasI AATT 1 cut(s) 539
TatI WGTACW 1 cut(s) 383
TfiI GAWTC 2 cut(s) 250, 485
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 1 cut(s) 569
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 4 cut(s) 66, 69, 309, 390
TspGWI ACGGA 2 cut(s) 139, 506
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 2 cut(s) 147, 207
XmiI GTMKAC 2 cut(s) 116, 306
XmnI GAANNNNTTC 1 cut(s) 9
XspI CTAG 2 cut(s) 381, 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.