Rmu_sc0001102.1_g000012

Domain of unknown function (DUF4216)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001102.1
OG0001541
Physical Location & Seq
Reverse (-)
50594 .. 53875
3282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001102.1_g000012.1.cds

Sequence Viewer

Length: 1527 bp
atgtatcttgaagatgtcgacacagccttcaatcgccctgaacgaaaccagtcagggagtgaacccaatgcaaaaatttctgttttcgctcaacgagtacgtccaactggaaaaggggtaatggttgagttatcacaggaagaattgaaacaagcaaattggtttatcttgaataattgcgacgagattgaagagtttagaagtgagcacgtggaactcctgaaaaaaaatagtactgaaaacatagatcagagacatatggaagagtttcaacaatggtttctaagtcgtgctaagacattatatgatgaagggttgatttctgaagagatttattcattagcacatggtgctgacccgcgcagtgtccagtatacagggtgcatggcaaatgatattcggtggtccgtcaaacggattgagcaataccagaccacacaggatagtggcattatgacgattgggtcccataatggtgaaccttgcaccttttatgggagtctggttagtgtggttcaatttcattttcgaaaaaagtacagtacaattctttttaaatgtcaatggtataattctgatcccaaaaagatgaagtttgactaccatttgacgtcgttaaacgttaaaaaccaatggtaccagcatgatccttatgtgctagcaaaacaagcccataaggtgttttatcttgatgacctgaaattgggacatccttggaaagttgtccagaagattcaatataggcacttgtgggatgttccagaaagagaagaagatgaagatcttgtagagcatgataatgatcccggtgacgaggacgatgacgctaatatatgggaggttcacgtagaagatgatgaaactagtacatctttgcgcagacatgatgtggaacttgaaactattatcctcaacaacacaaataaagaaaagaatgcagcagatgacggtgattttatcgacgatgattctacggatgatgatcttatgttggaccataatagagctcttggtgaagaagaattactagcctcaccaccactctttctctctccgattcacattgttggtgtcgccaccactctccttctctctccgattcaaaatcacccttcaccaccatgcaggccattcagtcctccacactccgactcgccccgctcgacccgcacactccgactcgccccacagtcctccacaatactctctctctatctcccccaaagtccaaagaagaatctggaccagaatgaggatgagggaggttgggggtctgatcccatgcctcatcagcgtctggcaagtgaggatgagggaggttggggatgtcctctcaatctctgcaatgggcatcgcgaccactctcttactctctccgattcaaaatcatccttcaccaccatgcaggccattcagtcctccacactccgactcgccccgctcgacctgctcctcaaacggacccaatcacagaatactctctctctgtctcccccaaagtccaaagaagaatctgaaccagaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218

Protein Analysis

508

Amino Acids

58.22

Weight (kDa)

4.94

Isoelectric Point (pI)

60.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 463
AatII GACGTC 1 cut(s) 614
Acc16I TGCGCA 1 cut(s) 878
Acc36I ACCTGC 1 cut(s) 1455
Acc65I GGTACC 1 cut(s) 636
AccB1I GGYRCC 1 cut(s) 636
AccBSI CCGCTC 2 cut(s) 1161, 1441
AccI GTMKAC 2 cut(s) 18, 374
AccII CGCG 2 cut(s) 361, 1356
AciI CCGC 4 cut(s) 359, 1159, 1168, 1439
AclI AACGTT 1 cut(s) 621
AclWI GGATC 4 cut(s) 572, 641, 797, 1271
AcsI RAATTY 1 cut(s) 75
AcuI CTGAAG 1 cut(s) 345
AcvI CACGTG 1 cut(s) 211
AcyI GRCGYC 1 cut(s) 611
AdeI CACNNNGTG 1 cut(s) 350
AfaI GTAC 6 cut(s) 99, 235, 539, 544, 638, 868
AfiI CCNNNNNNNGG 4 cut(s) 414, 495, 703, 1252
AhlI ACTAGT 1 cut(s) 863
AluBI AGCT 1 cut(s) 1007
AluI AGCT 1 cut(s) 1007
Alw21I GWGCWC 2 cut(s) 210, 1009
Alw26I GTCTC 2 cut(s) 247, 1494
AlwI GGATC 4 cut(s) 572, 641, 797, 1271
AlwNI CAGNNNCTG 1 cut(s) 1297
AoxI GGCC 2 cut(s) 1127, 1407
ApeKI GCWGC 1 cut(s) 938
ApoI RAATTY 1 cut(s) 75
Asp700I GAANNNNTTC 1 cut(s) 267
Asp718I GGTACC 1 cut(s) 636
AspLEI GCGC 2 cut(s) 363, 879
AspS9I GGNCC 5 cut(s) 405, 465, 994, 1243, 1461
AsuC2I CCSGG 1 cut(s) 807
AsuHPI GGTGA 8 cut(s) 488, 821, 962, 1025, 1026, 1100, 1107, 1387
AsuII TTCGAA 1 cut(s) 529
AsuNHI GCTAGC 1 cut(s) 658
AvaII GGWCC 5 cut(s) 405, 465, 994, 1243, 1461
BanI GGYRCC 1 cut(s) 636
BanII GRGCYC 1 cut(s) 1009
BarI GAAGNNNNNNTAC 4 cut(s) 584, 616, 1008, 1040
BbrPI CACGTG 1 cut(s) 211
Bbv12I GWGCWC 2 cut(s) 210, 1009
BbvI GCAGC 1 cut(s) 950
BcnI CCSGG 1 cut(s) 807
BcoDI GTCTC 2 cut(s) 247, 1494
BcuI ACTAGT 1 cut(s) 863
BfaI CTAG 3 cut(s) 659, 864, 1028
BfuAI ACCTGC 1 cut(s) 1455
BglII AGATCT 1 cut(s) 781
BisI GCNGC 1 cut(s) 939
BlsI GCNGC 1 cut(s) 940
BmcAI AGTACT 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 807
Bme18I GGWCC 5 cut(s) 405, 465, 994, 1243, 1461
BmgT120I GGNCC 5 cut(s) 405, 465, 994, 1243, 1461
BmiI GGNNCC 4 cut(s) 466, 467, 638, 1463
BmrFI CCNGG 1 cut(s) 807
BmsI GCATC 1 cut(s) 1360
BmtI GCTAGC 1 cut(s) 662
Bpu14I TTCGAA 1 cut(s) 529
BpuMI CCSGG 1 cut(s) 807
BsaAI YACGTR 2 cut(s) 211, 847
BsaBI GATNNNNATC 3 cut(s) 780, 801, 981
BsaHI GRCGYC 1 cut(s) 611
BsaJI CCNNGG 1 cut(s) 713
Bsc4I CCNNNNNNNGG 4 cut(s) 414, 495, 703, 1252
Bse1I ACTGG 3 cut(s) 49, 112, 370
Bse3DI GCAATG 1 cut(s) 1351
Bse8I GATNNNNATC 3 cut(s) 780, 801, 981
BseDI CCNNGG 1 cut(s) 713
BseGI GGATG 7 cut(s) 709, 760, 982, 1261, 1315, 1331, 1388
BseJI GATNNNNATC 3 cut(s) 780, 801, 981
BseLI CCNNNNNNNGG 4 cut(s) 414, 495, 703, 1252
BseMI GCAATG 1 cut(s) 1351
BseNI ACTGG 3 cut(s) 49, 112, 370
BseRI GAGGAG 1 cut(s) 1442
BseXI GCAGC 1 cut(s) 950
Bsh1236I CGCG 2 cut(s) 361, 1356
BshFI GGCC 2 cut(s) 1129, 1409
BshNI GGYRCC 1 cut(s) 636
BsiHKAI GWGCWC 2 cut(s) 210, 1009
BsiSI CCGG 1 cut(s) 807
BslFI GGGAC 2 cut(s) 451, 720
BslI CCNNNNNNNGG 4 cut(s) 414, 495, 703, 1252
BsmAI GTCTC 2 cut(s) 247, 1494
BsmFI GGGAC 2 cut(s) 451, 720
BsmI GAATGC 1 cut(s) 940
BsnI GGCC 2 cut(s) 1129, 1409
Bsp119I TTCGAA 1 cut(s) 529
Bsp1286I GDGCHC 2 cut(s) 210, 1009
Bsp143I GATC 7 cut(s) 247, 577, 646, 781, 802, 982, 1276
Bsp68I TCGCGA 1 cut(s) 1356
BspACI CCGC 4 cut(s) 359, 1159, 1168, 1439
BspANI GGCC 2 cut(s) 1129, 1409
BspFNI CGCG 2 cut(s) 361, 1356
BspLI GGNNCC 4 cut(s) 466, 467, 638, 1463
BspMI ACCTGC 1 cut(s) 1455
BspOI GCTAGC 1 cut(s) 662
BspPI GGATC 4 cut(s) 572, 641, 797, 1271
BspT104I TTCGAA 1 cut(s) 529
BspT107I GGYRCC 1 cut(s) 636
BsrBI CCGCTC 2 cut(s) 1161, 1441
BsrDI GCAATG 1 cut(s) 1351
BsrI ACTGG 3 cut(s) 49, 112, 370
BssECI CCNNGG 1 cut(s) 713
BssMI GATC 7 cut(s) 247, 577, 646, 781, 802, 982, 1276
BssNAI GTATAC 1 cut(s) 375
BssNI GRCGYC 1 cut(s) 611
BssT1I CCWWGG 1 cut(s) 713
Bst1107I GTATAC 1 cut(s) 375
Bst4CI ACNGT 3 cut(s) 542, 950, 1191
Bst6I CTCTTC 3 cut(s) 186, 258, 321
BstACI GRCGYC 1 cut(s) 611
BstAPI GCANNNNNTGC 1 cut(s) 350
BstBAI YACGTR 2 cut(s) 211, 847
BstBI TTCGAA 1 cut(s) 529
BstC8I GCNNGC 3 cut(s) 660, 1127, 1407
BstDEI CTNAG 2 cut(s) 284, 294
BstF5I GGATG 7 cut(s) 709, 760, 982, 1261, 1315, 1331, 1388
BstFNI CGCG 2 cut(s) 361, 1356
BstHHI GCGC 2 cut(s) 363, 879
BstKTI GATC 7 cut(s) 250, 580, 649, 784, 805, 985, 1279
BstMAI GTCTC 2 cut(s) 247, 1494
BstMBI GATC 7 cut(s) 247, 577, 646, 781, 802, 982, 1276
BstMWI GCNNNNNNNGC 5 cut(s) 350, 668, 1167, 1291, 1447
BstSCI CCNGG 1 cut(s) 805
BstUI CGCG 2 cut(s) 361, 1356
BstV1I GCAGC 1 cut(s) 950
BstX2I RGATCY 1 cut(s) 781
BstYI RGATCY 1 cut(s) 781
BstZ17I GTATAC 1 cut(s) 375
BsuRI GGCC 2 cut(s) 1129, 1409
BtgZI GCGATG 1 cut(s) 1337
BtsCI GGATG 7 cut(s) 709, 760, 982, 1261, 1315, 1331, 1388
BtsI GCAGTG 1 cut(s) 370
BtsIMutI CAGTG 1 cut(s) 370
BtuMI TCGCGA 1 cut(s) 1356
BveI ACCTGC 1 cut(s) 1455
Cac8I GCNNGC 3 cut(s) 660, 1127, 1407
CaiI CAGNNNCTG 1 cut(s) 1297
CfoI GCGC 2 cut(s) 363, 879
Cfr13I GGNCC 5 cut(s) 405, 465, 994, 1243, 1461
CseI GACGC 2 cut(s) 833, 1283
Csp6I GTAC 6 cut(s) 98, 234, 538, 543, 637, 867
CviAII CATG 8 cut(s) 347, 385, 644, 794, 884, 1122, 1282, 1402
CviJI RGCY 6 cut(s) 26, 671, 1007, 1031, 1129, 1409
CviKI_1 RGCY 6 cut(s) 26, 671, 1007, 1031, 1129, 1409
CviQI GTAC 6 cut(s) 98, 234, 538, 543, 637, 867
DdeI CTNAG 2 cut(s) 284, 294
DpnI GATC 7 cut(s) 249, 579, 648, 783, 804, 984, 1278
DpnII GATC 7 cut(s) 247, 577, 646, 781, 802, 982, 1276
DraI TTTAAA 1 cut(s) 556
DraIII CACNNNGTG 1 cut(s) 350
DrdI GACNNNNNNGTC 1 cut(s) 463
DseDI GACNNNNNNGTC 1 cut(s) 463
Eam1104I CTCTTC 3 cut(s) 186, 258, 321
EarI CTCTTC 3 cut(s) 186, 258, 321
Ecl136II GAGCTC 1 cut(s) 1007
Eco130I CCWWGG 1 cut(s) 713
Eco24I GRGCYC 1 cut(s) 1009
Eco47I GGWCC 5 cut(s) 405, 465, 994, 1243, 1461
Eco53kI GAGCTC 1 cut(s) 1007
Eco57I CTGAAG 1 cut(s) 345
Eco72I CACGTG 1 cut(s) 211
EcoICRI GAGCTC 1 cut(s) 1007
EcoO109I RGGNCCY 1 cut(s) 465
EcoT14I CCWWGG 1 cut(s) 713
EcoT38I GRGCYC 1 cut(s) 1009
ErhI CCWWGG 1 cut(s) 713
FaeI CATG 8 cut(s) 350, 388, 647, 797, 887, 1125, 1285, 1405
FaqI GGGAC 2 cut(s) 451, 720
FatI CATG 8 cut(s) 346, 384, 643, 793, 883, 1121, 1281, 1401
FauI CCCGC 4 cut(s) 366, 1166, 1175, 1446
FauNDI CATATG 1 cut(s) 258
FblI GTMKAC 2 cut(s) 18, 374
Fnu4HI GCNGC 1 cut(s) 939
FokI GGATG 7 cut(s) 696, 767, 989, 1268, 1322, 1338, 1375
FriOI GRGCYC 1 cut(s) 1009
Fsp4HI GCNGC 1 cut(s) 939
FspBI CTAG 3 cut(s) 659, 864, 1028
FspI TGCGCA 1 cut(s) 878
GlaI GCGC 2 cut(s) 362, 878
GluI GCNGC 1 cut(s) 939
HaeIII GGCC 2 cut(s) 1129, 1409
HapII CCGG 1 cut(s) 807
HgaI GACGC 2 cut(s) 833, 1283
HhaI GCGC 2 cut(s) 363, 879
Hin1I GRCGYC 1 cut(s) 611
Hin1II CATG 8 cut(s) 350, 388, 647, 797, 887, 1125, 1285, 1405
Hin6I GCGC 2 cut(s) 361, 877
HinP1I GCGC 2 cut(s) 361, 877
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HpaII CCGG 1 cut(s) 807
HphI GGTGA 8 cut(s) 488, 821, 962, 1025, 1026, 1100, 1107, 1387
Hpy166II GTNNAC 5 cut(s) 19, 62, 375, 479, 844
Hpy188III TCNNGA 8 cut(s) 8, 169, 220, 689, 727, 761, 1241, 1355
Hpy8I GTNNAC 5 cut(s) 19, 62, 375, 479, 844
Hpy99I CGWCG 3 cut(s) 185, 616, 965
HpyAV CCTTC 5 cut(s) 37, 305, 1097, 1122, 1402
HpyCH4III ACNGT 3 cut(s) 542, 950, 1191
HpyCH4IV ACGT 5 cut(s) 100, 210, 611, 621, 846
HpyCH4V TGCA 7 cut(s) 71, 384, 486, 938, 1125, 1344, 1405
HpyF10VI GCNNNNNNNGC 5 cut(s) 350, 668, 1167, 1291, 1447
HpyF3I CTNAG 2 cut(s) 284, 294
HpySE526I ACGT 5 cut(s) 100, 210, 611, 621, 846
Hsp92I GRCGYC 1 cut(s) 611
Hsp92II CATG 8 cut(s) 350, 388, 647, 797, 887, 1125, 1285, 1405
HspAI GCGC 2 cut(s) 361, 877
KflI GGGWCCC 1 cut(s) 465
KpnI GGTACC 1 cut(s) 640
Kzo9I GATC 7 cut(s) 247, 577, 646, 781, 802, 982, 1276
LmnI GCTCC 1 cut(s) 1455
Lsp1109I GCAGC 1 cut(s) 950
LweI GCATC 1 cut(s) 1360
MaeI CTAG 3 cut(s) 659, 864, 1028
MaeII ACGT 5 cut(s) 100, 210, 611, 621, 846
MaeIII GTNAC 1 cut(s) 809
MalI GATC 7 cut(s) 249, 579, 648, 783, 804, 984, 1278
MbiI CCGCTC 2 cut(s) 1161, 1441
MboI GATC 7 cut(s) 247, 577, 646, 781, 802, 982, 1276
MflI RGATCY 1 cut(s) 781
MhlI GDGCHC 2 cut(s) 210, 1009
MluCI AATT 9 cut(s) 75, 143, 157, 175, 518, 546, 571, 701, 1022
MlyI GAGTC 4 cut(s) 508, 1145, 1173, 1425
MmeI TCCRAC 5 cut(s) 128, 972, 1173, 1201, 1453
MroXI GAANNNNTTC 1 cut(s) 267
MseI TTAA 3 cut(s) 555, 617, 624
MslI CAYNNNNRTG 4 cut(s) 474, 798, 1120, 1400
MspI CCGG 1 cut(s) 807
MspR9I CCNGG 1 cut(s) 807
Mva1269I GAATGC 1 cut(s) 940
MvnI CGCG 2 cut(s) 361, 1356
MwoI GCNNNNNNNGC 5 cut(s) 350, 668, 1167, 1291, 1447
NciI CCSGG 1 cut(s) 807
NdeI CATATG 1 cut(s) 258
NdeII GATC 7 cut(s) 247, 577, 646, 781, 802, 982, 1276
NheI GCTAGC 1 cut(s) 658
NlaIII CATG 8 cut(s) 350, 388, 647, 797, 887, 1125, 1285, 1405
NlaIV GGNNCC 4 cut(s) 466, 467, 638, 1463
NmuCI GTSAC 1 cut(s) 809
NruI TCGCGA 1 cut(s) 1356
NsbI TGCGCA 1 cut(s) 878
NspV TTCGAA 1 cut(s) 529
PcsI WCGNNNNNNNCGW 3 cut(s) 40, 1160, 1440
PctI GAATGC 1 cut(s) 940
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 7 cut(s) 733, 968, 1057, 1099, 1237, 1379, 1511
PkrI GCNGC 1 cut(s) 940
PleI GAGTC 4 cut(s) 507, 1145, 1173, 1425
PmaCI CACGTG 1 cut(s) 211
PmlI CACGTG 1 cut(s) 211
PpsI GAGTC 4 cut(s) 507, 1145, 1173, 1425
Ppu21I YACGTR 2 cut(s) 211, 847
PpuMI RGGWCCY 1 cut(s) 465
Psp124BI GAGCTC 1 cut(s) 1009
Psp1406I AACGTT 1 cut(s) 621
Psp5II RGGWCCY 1 cut(s) 465
PspCI CACGTG 1 cut(s) 211
PspN4I GGNNCC 4 cut(s) 466, 467, 638, 1463
PspPI GGNCC 5 cut(s) 405, 465, 994, 1243, 1461
PspPPI RGGWCCY 1 cut(s) 465
PstNI CAGNNNCTG 1 cut(s) 1297
PsuI RGATCY 1 cut(s) 781
RruI TCGCGA 1 cut(s) 1356
RsaI GTAC 6 cut(s) 99, 235, 539, 544, 638, 868
RsaNI GTAC 6 cut(s) 98, 234, 538, 543, 637, 867
RseI CAYNNNNRTG 4 cut(s) 474, 798, 1120, 1400
SacI GAGCTC 1 cut(s) 1009
SalI GTCGAC 1 cut(s) 17
SaqAI TTAA 3 cut(s) 555, 617, 624
SatI GCNGC 1 cut(s) 939
Sau3AI GATC 7 cut(s) 247, 577, 646, 781, 802, 982, 1276
Sau96I GGNCC 5 cut(s) 405, 465, 994, 1243, 1461
ScaI AGTACT 1 cut(s) 235
SchI GAGTC 4 cut(s) 508, 1145, 1173, 1425
ScrFI CCNGG 1 cut(s) 807
SduI GDGCHC 2 cut(s) 210, 1009
SfaNI GCATC 1 cut(s) 1360
SfuI TTCGAA 1 cut(s) 529
SinI GGWCC 5 cut(s) 405, 465, 994, 1243, 1461
SmiMI CAYNNNNRTG 4 cut(s) 474, 798, 1120, 1400
SpeI ACTAGT 1 cut(s) 863
Sse9I AATT 9 cut(s) 75, 143, 157, 175, 518, 546, 571, 701, 1022
SsiI CCGC 4 cut(s) 359, 1159, 1168, 1439
SspMI CTAG 3 cut(s) 659, 864, 1028
SstI GAGCTC 1 cut(s) 1009
StyD4I CCNGG 1 cut(s) 805
StyI CCWWGG 1 cut(s) 713
TaaI ACNGT 3 cut(s) 542, 950, 1191
TaiI ACGT 5 cut(s) 103, 213, 614, 624, 849
TaqI TCGA 5 cut(s) 18, 529, 960, 1163, 1443
TasI AATT 9 cut(s) 75, 143, 157, 175, 518, 546, 571, 701, 1022
TatI WGTACW 4 cut(s) 233, 537, 542, 866
TfiI GAWTC 7 cut(s) 733, 968, 1057, 1099, 1237, 1379, 1511
Tru1I TTAA 3 cut(s) 555, 617, 624
Tru9I TTAA 3 cut(s) 555, 617, 624
TscAI CASTG 1 cut(s) 370
TseFI GTSAC 1 cut(s) 809
TseI GCWGC 1 cut(s) 938
Tsp45I GTSAC 1 cut(s) 809
TspDTI ATGAA 6 cut(s) 324, 327, 512, 605, 792, 873
TspGWI ACGGA 4 cut(s) 397, 430, 989, 1474
TspRI CASTG 1 cut(s) 370
VpaK11BI GGWCC 5 cut(s) 405, 465, 994, 1243, 1461
XapI RAATTY 1 cut(s) 75
XmiI GTMKAC 2 cut(s) 18, 374
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 3 cut(s) 659, 864, 1028
ZraI GACGTC 1 cut(s) 612
ZrmI AGTACT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.