FvH4_4g22441

Glycine--tRNA ligase 1

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
25280846 .. 25282076
1231 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g22441.t1

Sequence Viewer

Length: 831 bp
ATGACTGAGATTACAGAACGCTCCCGGCGAGCTCTAGTCAACACTCTTGAACGGCGCTTCTTTTACATCCCTTCTTTCAAGATTTACGGTGGCGTTGCCGGCCTCTACGACTATGGCTCCCCCAGCTGCAAACTCAAGAAGAATGTCCTTGCGCTTTGGCATCAGCATTTTGTGCTTCAAGAGAACATGTGGGAGATTGACTGCCCTTGCCTCACGCCAGAGGCTGTTCTGAAGGCATCTGGCCATGTTGATAAGTTCAGTGATCTCATGGTTAAGGATGTGGAGAAAGGGACTTGCTACCGGGCCGATCACTTGCTCAAGGATTTCTGCATCAAGAAGCTTGAGAGGCTTGAGGAGGACTCAGAGATGGCAATGGAGCTGAAAGAACTGCTCTCGAAACTGGATGGTCTCTCAGCTGAAGAGCTGGGTGCATGCATTAAGAAATTTGAGATTAAAGCCCCCCAAACAAAGAATCCTCTCTCGGATCCTTATCCTTTCAATTTGATGTTTCAAACATCAATTGGTCCTACTGGTTCGAGCACTGGGTTCTTTCGCCCAGAAACTGCACAAGGCATATTTGTGAATTTTACAGACATGTGCTATGACAATGGTTGCATGCTGCCTTTTGCTGCTGCTCAAGTTGGCCAGGCTTTTCGAAACGAGATTTCTCCTCGCCAAGGCCTGTTAAGAGTCCGTGAGTTCACACTCGCGGAGATTGAGCACTTTGTTGATCCTGAAAACAAATCTCACCTGAAATTCCCCAGCGTTGAGAAGTTGGAACCCCTATGTTCCCAAGGGATGAACAAAACACCGGCCAATCTCCAAGATTGA

Protein Analysis

277

Amino Acids

31.32

Weight (kDa)

5.78

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_2b PF00587 185 - 247 3.1e-07 tRNA synthetase class II core domain (G, H, P, S and T)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 710
AciI CCGC 1 cut(s) 710
AclWI GGATC 3 cut(s) 479, 492, 725
AcoI YGGCCR 3 cut(s) 241, 643, 813
AcsI RAATTY 3 cut(s) 443, 583, 755
AcuI CTGAAG 2 cut(s) 251, 438
AfiI CCNNNNNNNGG 1 cut(s) 677
AflIII ACRYGT 2 cut(s) 186, 594
AgsI TTSAA 5 cut(s) 50, 79, 179, 499, 512
AjnI CCWGG 1 cut(s) 645
AluBI AGCT 6 cut(s) 32, 126, 340, 379, 416, 424
AluI AGCT 6 cut(s) 32, 126, 340, 379, 416, 424
Alw21I GWGCWC 3 cut(s) 34, 542, 723
Alw26I GTCTC 1 cut(s) 413
AlwI GGATC 3 cut(s) 479, 492, 725
AlwNI CAGNNNCTG 2 cut(s) 224, 563
AoxI GGCC 6 cut(s) 100, 241, 303, 643, 679, 813
ApeKI GCWGC 4 cut(s) 126, 619, 629, 632
ApoI RAATTY 3 cut(s) 443, 583, 755
AspLEI GCGC 2 cut(s) 57, 154
AspS9I GGNCC 2 cut(s) 303, 524
AsuC2I CCSGG 2 cut(s) 25, 302
AsuHPI GGTGA 1 cut(s) 740
AsuII TTCGAA 1 cut(s) 655
AvaII GGWCC 1 cut(s) 524
BalI TGGCCA 2 cut(s) 243, 645
BamHI GGATCC 1 cut(s) 484
BanII GRGCYC 1 cut(s) 34
Bbv12I GWGCWC 3 cut(s) 34, 542, 723
BbvI GCAGC 4 cut(s) 113, 606, 616, 619
BccI CCATC 2 cut(s) 361, 398
BceAI ACGGC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 647
BcnI CCSGG 2 cut(s) 25, 302
BcoDI GTCTC 1 cut(s) 413
BfaI CTAG 1 cut(s) 35
BfoI RGCGCY 1 cut(s) 58
BisI GCNGC 4 cut(s) 127, 620, 630, 633
BlsI GCNGC 4 cut(s) 128, 621, 631, 634
Bme1390I CCNGG 3 cut(s) 25, 302, 647
Bme18I GGWCC 1 cut(s) 524
BmgT120I GGNCC 2 cut(s) 303, 524
BmiI GGNNCC 3 cut(s) 118, 486, 780
BmrFI CCNGG 3 cut(s) 25, 302, 647
BmrI ACTGGG 1 cut(s) 552
BmsI GCATC 3 cut(s) 169, 245, 339
BmuI ACTGGG 1 cut(s) 552
BplI GAGNNNNNCTC 2 cut(s) 344, 376
Bpu14I TTCGAA 1 cut(s) 655
BpuEI CTTGAG 5 cut(s) 119, 302, 362, 371, 621
BpuMI CCSGG 2 cut(s) 25, 302
BsaBI GATNNNNATC 1 cut(s) 489
BsaI GGTCTC 1 cut(s) 413
BsaJI CCNNGG 2 cut(s) 676, 793
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 1 cut(s) 677
Bse118I RCCGGY 2 cut(s) 98, 811
Bse1I ACTGG 3 cut(s) 405, 535, 547
Bse3DI GCAATG 1 cut(s) 378
Bse8I GATNNNNATC 1 cut(s) 489
BseBI CCWGG 1 cut(s) 647
BseDI CCNNGG 2 cut(s) 676, 793
BseGI GGATG 4 cut(s) 66, 283, 409, 804
BseJI GATNNNNATC 1 cut(s) 489
BseLI CCNNNNNNNGG 1 cut(s) 677
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 2 cut(s) 375, 426
BseNI ACTGG 3 cut(s) 405, 535, 547
BseRI GAGGAG 2 cut(s) 368, 660
BseXI GCAGC 4 cut(s) 113, 606, 616, 619
BseYI CCCAGC 3 cut(s) 122, 424, 761
BsgI GTGCAG 1 cut(s) 549
Bsh1236I CGCG 1 cut(s) 710
BshFI GGCC 6 cut(s) 102, 243, 305, 645, 681, 815
BsiHKAI GWGCWC 3 cut(s) 34, 542, 723
BsiSI CCGG 4 cut(s) 25, 99, 301, 812
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 1 cut(s) 677
BsmAI GTCTC 1 cut(s) 413
BsmFI GGGAC 1 cut(s) 304
BsnI GGCC 6 cut(s) 102, 243, 305, 645, 681, 815
Bso31I GGTCTC 1 cut(s) 413
Bsp119I TTCGAA 1 cut(s) 655
Bsp1286I GDGCHC 3 cut(s) 34, 542, 723
Bsp143I GATC 4 cut(s) 262, 307, 484, 730
BspACI CCGC 1 cut(s) 710
BspANI GGCC 6 cut(s) 102, 243, 305, 645, 681, 815
BspCNI CTCAG 2 cut(s) 374, 425
BspFNI CGCG 1 cut(s) 710
BspLI GGNNCC 3 cut(s) 118, 486, 780
BspPI GGATC 3 cut(s) 479, 492, 725
BspQI GCTCTTC 1 cut(s) 414
BspT104I TTCGAA 1 cut(s) 655
BspTNI GGTCTC 1 cut(s) 413
BsrDI GCAATG 1 cut(s) 378
BsrFI RCCGGY 2 cut(s) 98, 811
BsrI ACTGG 3 cut(s) 405, 535, 547
BssAI RCCGGY 2 cut(s) 98, 811
BssECI CCNNGG 2 cut(s) 676, 793
BssMI GATC 4 cut(s) 262, 307, 484, 730
BssT1I CCWWGG 2 cut(s) 676, 793
Bst2UI CCWGG 1 cut(s) 647
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 414
BstAPI GCANNNNNTGC 1 cut(s) 172
BstBI TTCGAA 1 cut(s) 655
BstC8I GCNNGC 4 cut(s) 30, 100, 433, 617
BstDEI CTNAG 3 cut(s) 6, 361, 412
BstENI CCTNNNNNAGG 1 cut(s) 675
BstF5I GGATG 4 cut(s) 66, 283, 409, 804
BstFNI CGCG 1 cut(s) 710
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 2 cut(s) 57, 154
BstKTI GATC 4 cut(s) 265, 310, 487, 733
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 4 cut(s) 262, 307, 484, 730
BstMWI GCNNNNNNNGC 4 cut(s) 99, 123, 172, 346
BstNI CCWGG 1 cut(s) 647
BstNSI RCATGY 4 cut(s) 190, 435, 598, 619
BstSCI CCNGG 3 cut(s) 23, 300, 645
BstUI CGCG 1 cut(s) 710
BstV1I GCAGC 4 cut(s) 113, 606, 616, 619
BstX2I RGATCY 1 cut(s) 484
BstYI RGATCY 1 cut(s) 484
BsuRI GGCC 6 cut(s) 102, 243, 305, 645, 681, 815
BtsCI GGATG 4 cut(s) 66, 283, 409, 804
BtsIMutI CAGTG 2 cut(s) 265, 540
Cac8I GCNNGC 4 cut(s) 30, 100, 433, 617
CaiI CAGNNNCTG 2 cut(s) 224, 563
CfoI GCGC 2 cut(s) 57, 154
Cfr10I RCCGGY 2 cut(s) 98, 811
Cfr13I GGNCC 2 cut(s) 303, 524
CviAII CATG 6 cut(s) 187, 245, 268, 432, 595, 616
DdeI CTNAG 3 cut(s) 6, 361, 412
DpnI GATC 4 cut(s) 264, 309, 486, 732
DpnII GATC 4 cut(s) 262, 307, 484, 730
EaeI YGGCCR 3 cut(s) 241, 643, 813
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
Ecl136II GAGCTC 1 cut(s) 32
Eco130I CCWWGG 2 cut(s) 676, 793
Eco147I AGGCCT 1 cut(s) 681
Eco24I GRGCYC 1 cut(s) 34
Eco31I GGTCTC 1 cut(s) 413
Eco47I GGWCC 1 cut(s) 524
Eco53kI GAGCTC 1 cut(s) 32
Eco57I CTGAAG 2 cut(s) 251, 438
EcoICRI GAGCTC 1 cut(s) 32
EcoNI CCTNNNNNAGG 1 cut(s) 675
EcoRII CCWGG 1 cut(s) 645
EcoT14I CCWWGG 2 cut(s) 676, 793
EcoT22I ATGCAT 1 cut(s) 437
EcoT38I GRGCYC 1 cut(s) 34
ErhI CCWWGG 2 cut(s) 676, 793
FaeI CATG 6 cut(s) 190, 248, 271, 435, 598, 619
FaqI GGGAC 1 cut(s) 304
FatI CATG 6 cut(s) 186, 244, 267, 431, 594, 615
Fnu4HI GCNGC 4 cut(s) 127, 620, 630, 633
FokI GGATG 4 cut(s) 53, 290, 416, 811
FriOI GRGCYC 1 cut(s) 34
Fsp4HI GCNGC 4 cut(s) 127, 620, 630, 633
FspBI CTAG 1 cut(s) 35
GlaI GCGC 2 cut(s) 56, 153
GluI GCNGC 4 cut(s) 127, 620, 630, 633
GsaI CCCAGC 3 cut(s) 126, 428, 765
HaeII RGCGCY 1 cut(s) 58
HaeIII GGCC 6 cut(s) 102, 243, 305, 645, 681, 815
HapII CCGG 4 cut(s) 25, 99, 301, 812
HhaI GCGC 2 cut(s) 57, 154
Hin1II CATG 6 cut(s) 190, 248, 271, 435, 598, 619
Hin6I GCGC 2 cut(s) 55, 152
HinP1I GCGC 2 cut(s) 55, 152
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 3 cut(s) 359, 472, 690
HpaII CCGG 4 cut(s) 25, 99, 301, 812
HphI GGTGA 1 cut(s) 740
Hpy166II GTNNAC 2 cut(s) 40, 702
Hpy188I TCNGA 3 cut(s) 231, 364, 484
Hpy188III TCNNGA 7 cut(s) 47, 79, 136, 179, 334, 394, 734
Hpy8I GTNNAC 2 cut(s) 40, 702
HpyAV CCTTC 2 cut(s) 81, 226
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4V TGCA 6 cut(s) 129, 330, 431, 435, 566, 615
HpyF10VI GCNNNNNNNGC 4 cut(s) 99, 123, 172, 346
HpyF3I CTNAG 3 cut(s) 6, 361, 412
Hsp92II CATG 6 cut(s) 190, 248, 271, 435, 598, 619
HspAI GCGC 2 cut(s) 55, 152
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
Kzo9I GATC 4 cut(s) 262, 307, 484, 730
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 3 cut(s) 26, 122, 376
Lsp1109I GCAGC 4 cut(s) 113, 606, 616, 619
LweI GCATC 3 cut(s) 169, 245, 339
MaeI CTAG 1 cut(s) 35
MalI GATC 4 cut(s) 264, 309, 486, 732
MboI GATC 4 cut(s) 262, 307, 484, 730
MboII GAAGA 2 cut(s) 151, 431
MfeI CAATTG 1 cut(s) 519
MflI RGATCY 1 cut(s) 484
MhlI GDGCHC 3 cut(s) 34, 542, 723
MlsI TGGCCA 2 cut(s) 243, 645
MluCI AATT 5 cut(s) 443, 499, 519, 583, 755
MluNI TGGCCA 2 cut(s) 243, 645
MlyI GAGTC 2 cut(s) 353, 699
MmeI TCCRAC 1 cut(s) 756
MnlI CCTC 8 cut(s) 113, 214, 221, 339, 346, 349, 486, 681
Mox20I TGGCCA 2 cut(s) 243, 645
Mph1103I ATGCAT 1 cut(s) 437
MroNI GCCGGC 1 cut(s) 98
MscI TGGCCA 2 cut(s) 243, 645
MseI TTAA 4 cut(s) 273, 438, 453, 686
MslI CAYNNNNRTG 1 cut(s) 578
Msp20I TGGCCA 2 cut(s) 243, 645
MspA1I CMGCKG 2 cut(s) 126, 416
MspI CCGG 4 cut(s) 25, 99, 301, 812
MspR9I CCNGG 3 cut(s) 25, 302, 647
MunI CAATTG 1 cut(s) 519
MvaI CCWGG 1 cut(s) 647
MvnI CGCG 1 cut(s) 710
MwoI GCNNNNNNNGC 4 cut(s) 99, 123, 172, 346
NaeI GCCGGC 1 cut(s) 100
NciI CCSGG 2 cut(s) 25, 302
NdeII GATC 4 cut(s) 262, 307, 484, 730
NgoMIV GCCGGC 1 cut(s) 98
NlaIII CATG 6 cut(s) 190, 248, 271, 435, 598, 619
NlaIV GGNNCC 3 cut(s) 118, 486, 780
NsiI ATGCAT 1 cut(s) 437
NspI RCATGY 4 cut(s) 190, 435, 598, 619
NspV TTCGAA 1 cut(s) 655
PaeI GCATGC 2 cut(s) 435, 619
PceI AGGCCT 1 cut(s) 681
PciI ACATGT 2 cut(s) 186, 594
PciSI GCTCTTC 1 cut(s) 414
PcsI WCGNNNNNNNCGW 1 cut(s) 25
PdiI GCCGGC 1 cut(s) 100
PfeI GAWTC 1 cut(s) 472
PkrI GCNGC 4 cut(s) 128, 621, 631, 634
PleI GAGTC 2 cut(s) 353, 698
PpsI GAGTC 2 cut(s) 353, 698
PscI ACATGT 2 cut(s) 186, 594
Psp124BI GAGCTC 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 645
PspFI CCCAGC 3 cut(s) 122, 424, 761
PspGI CCWGG 1 cut(s) 645
PspN4I GGNNCC 3 cut(s) 118, 486, 780
PspPI GGNCC 2 cut(s) 303, 524
PstNI CAGNNNCTG 2 cut(s) 224, 563
PsuI RGATCY 1 cut(s) 484
PvuII CAGCTG 2 cut(s) 126, 416
RseI CAYNNNNRTG 1 cut(s) 578
SacI GAGCTC 1 cut(s) 34
SapI GCTCTTC 1 cut(s) 414
SaqAI TTAA 4 cut(s) 273, 438, 453, 686
SatI GCNGC 4 cut(s) 127, 620, 630, 633
Sau3AI GATC 4 cut(s) 262, 307, 484, 730
Sau96I GGNCC 2 cut(s) 303, 524
SchI GAGTC 2 cut(s) 353, 699
ScrFI CCNGG 3 cut(s) 25, 302, 647
SduI GDGCHC 3 cut(s) 34, 542, 723
SetI ASST 7 cut(s) 34, 128, 342, 381, 418, 426, 753
SfaNI GCATC 3 cut(s) 169, 245, 339
SfuI TTCGAA 1 cut(s) 655
SinI GGWCC 1 cut(s) 524
SmiMI CAYNNNNRTG 1 cut(s) 578
SmlI CTYRAG 5 cut(s) 134, 317, 341, 350, 636
SmoI CTYRAG 5 cut(s) 134, 317, 341, 350, 636
SphI GCATGC 2 cut(s) 435, 619
Sse9I AATT 5 cut(s) 443, 499, 519, 583, 755
SseBI AGGCCT 1 cut(s) 681
SsiI CCGC 1 cut(s) 710
SspMI CTAG 1 cut(s) 35
SstI GAGCTC 1 cut(s) 34
StuI AGGCCT 1 cut(s) 681
StyD4I CCNGG 3 cut(s) 23, 300, 645
StyI CCWWGG 2 cut(s) 676, 793
TaaI ACNGT 1 cut(s) 89
TaqI TCGA 3 cut(s) 395, 536, 655
TasI AATT 5 cut(s) 443, 499, 519, 583, 755
TfiI GAWTC 1 cut(s) 472
Tru1I TTAA 4 cut(s) 273, 438, 453, 686
Tru9I TTAA 4 cut(s) 273, 438, 453, 686
TscAI CASTG 2 cut(s) 265, 547
TseI GCWGC 4 cut(s) 126, 619, 629, 632
TspDTI ATGAA 1 cut(s) 815
TspGWI ACGGA 1 cut(s) 683
TspRI CASTG 2 cut(s) 265, 547
VpaK11BI GGWCC 1 cut(s) 524
XagI CCTNNNNNAGG 1 cut(s) 675
XapI RAATTY 3 cut(s) 443, 583, 755
XceI RCATGY 4 cut(s) 190, 435, 598, 619
XspI CTAG 1 cut(s) 35
Zsp2I ATGCAT 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.