Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001310

Physical Location & Seq

Genomic Coordinates Forward (+)

9962855 .. 9967235

Gene Structure 4381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1131000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2196 bp

ATGCGTAAATTCTCCGCTTTCATCACCTCATCAGCTTCTTCTGGTCACTATTTCTGCTCCAATCGCTTCACTCCTCTCCTCCACTCGCCCCCGCCTCCCTCCTTCATCCGCCACTTCACGCCGCCGATGGCCGCCCCGGAAGACTCGCTCCGCAAGGCCCTCGCCGACAAGCTGTCGGAGGTCGAGAATCAGGGGAACCAAGTGCGGGCTCTTAAAGCCGGCAAAGCCAACAAGTCGGAAATCGACGCCGCCATTGAGGCACTGAACGCGCTCAAGCTGGAGAAGGCTTCGATCGAGAAGGACCTCCAGGCAACATTGAGCAGCAGCGAAGGGTCCGGTAACAGGGAGGCGTTTCGTCAGGCGGTGTCGAATACGCTTGAACGGCGTCTCTTCTACATCAAGTCTTTTAACATCTACGGTGGCGTTGCGGGGCTGTATGACTACGGCCCGCCCGGCTGCGCCGTCAAGTCCAACGTACTTGCTTTTTGGCGGCAGCATTTTGTTCTTGAGGAGAACATGCTGGAAGTTGACTGTCCCTGTGTCACACCTGAGGTGGTTCTCAAGGCATCTGGGCATGTTGACAAATTCACTGATCTTATGGTGAAGGACGAGAAAACTGGGACTTGCTACCGAGCGGATCACTTGCTGAAAGATTTTTGTAACGATAAGCTTCAGAAGGATCTCAACATTACTGCAGAGAAGGCCAAGGAGCTTAAGCATATACTTGCGGTGCTAGATGACCTCTCGCCTGAAGATCTAGGTGCAAAGATTAAGGAGTTTGGTATTACTGCCCCTGATACGAAGAATCCTCTATCTGATCCTTATCCTTTCAACCTGATGTTTCAAACTTCAATTGGTCCATCTGGCTTGATTCCTGGGTATTTGCGTCCAGAAACTGCACAAGGCATATTTGTGAATTTTAAGGATCTGTATTATTACAATGGCAACAAGCTACCATTTGCTGCAGCTCAAATTGGGCAGGCTTTTAGAAACGAGATATCTCCTCGCCAAGGCCTTCTGAGAGTTCGGGAATTCACACTGGCTGAGATTGAGCATTTTGTAGATCCCGAAGACAAATCTCACCCAAAGTTCGCAGAGGTTGCAGAGTTAGAGTTTTTGATGTTCCCTAGGGAATTACAAATGTCAGGGGAATCTGCAAAGACAATCCGTTTGGGTGAAGCAGTTGCTAAGGGAATTGTCAACAATGAAACGTTGGGCTACTTCATTGGAAGAGTATATCTTTTCCTTACCGGTTTAGGTATTGACAATAAACGGTTAAGGTTCCGTCAGCACCTTGCAAATGAAATGGCTCACTATGCTGCTGATTGCTGGGATGCTGAGATTGAGTGTTCCTATGGCTGGATTGAGTGTGTTGGTATAGCTGATAGATCTGCATATGACTTGCGTGCTCATACGGAGAAAAGTGGTGAAGCTCTTGTGGCTCATGAAAAATATCCAGAACCAAGAGAAGTAGAGGTATTGGTTATAGCTCCAGTAAAGAAAGAGATCGGCCTTGCATTCAAAGGGAACCAAAAGAATGTAATTGAAGCTTTGGAGGCCATGAAAGAACAAGAAGCTATGGCATTGAAGGCTGATTTAGAGTCTAAAGAGGAGGTGGAGTTTTACGTCTGCACGCTGGGGAAGAATGTAACCATTAAGAAGAGTATGGTAAAAATTTCAAAGGAGAAAAAGAAAGAACACCAGAGAGTATTCACGCCTTCTGTAATTGAACCATCTTTTGGTATTGGCCGAATTATATATTGCCTCTTTGAGCACACATACTACACGAGGCCTAGTAAAGCTGCTGATCAACAGTTGAATGTTTTTGGTTTCCCCCCACTTGTGGCACCCATTAAGTGCACAGTTTTTCCTCTGGTTCAGAACCATCAGTATGAGGATGTTGCTAAAGAAATTTCCAAGTCATTGACCGCTGCTGGAATCTCGCATAAAATTGACATTACAGGTACCTCGATTGGAAAAAGATATGCTCGAACTGATGAGCTGGGTGTACCTTTTGCAATCACGGTGGATTCAACATCATCGGTGACGCTCAGAGAGAGGGACAGCAAGGATCAAATCCGTGTTGATGTGAAAGAGGCGGCATCTGTCGTGAAAGATGTAGCCGAGGGAGTGAGGAGTTGGGCTGATGTGTGGGAGACATTCCCCCATCATTCTTCTGCATCTGCAGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

732

Amino Acids

81.57

Weight (kDa)

6.09

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHEP-TRS	PF00458	59 - 103	4.6e-11	WHEP-TRS domain
tRNA-synt_2b	PF00587	294 - 592	7.6e-12	tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon	PF03129	619 - 705	1.9e-19	Anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29880
fragaria_vesca	FvH4_4g22441 FvH4_4g22450 FvH4_4g22450 FvH4_4g22610 FvH4_4g22610
malus_domestica	MD13G1131000.v1.1 MD13G1145800.v1.1 MD16G1141200.v1.1
prunus_persica	Prupe.1G214600_v2.0.a1
pyrus_communis	pycom13g11430 pycom13g12530 pycom16g11160 pycom16g11170
rosa_chinensis	RchiOBHm_Chr1g0361881 RchiOBHm_Chr4g0428711 RchiOBHm_Chr4g0428851
rosa_laevigata	RLG00000007120 RLG00000007133 RLG00000027689 RLG00000027690 RLG00000027694
rosa_multiflora	Rmu_co8208336.1_g000001 Rmu_co8210234.1_g000001 Rmu_sc0003316.1_g000006 Rmu_sc0008612.1_g000003 Rmu_sc0018216.1_g000001 Rmu_ssc0000124.1_g000013
rosa_roxburghii	Rroxscaffold_4G00294630 Rroxscaffold_5G00370530
rosa_rugosa	Rorug01G0292100 Rorug04G0227400 Rorug04G0227500 Rorug04G0229700
rosa_samantha	Rh1AG302800 Rh1BG265900 Rh1BG266000 Rh1CG284000 Rh1DG295900 Rh1DG296000 Rh4AG284700 Rh4AG284900 Rh4AG286400 Rh4BG290700 Rh4BG290900 Rh4BG292200 Rh4CG308200 Rh4DG288200 Rh4DG289400
rosa_wichuraiana	Rw0G020620 Rw1G026830 Rw4G024720 Rw4G024830 Rw7G040280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1964
AccB1I	GGYRCC	2 cut(s)	1846, 1964
AccB7I	CCANNNNNTGG	1 cut(s)	1739
AccBSI	CCGCTC	1 cut(s)	635
AccII	CGCG	1 cut(s)	269
AclI	AACGTT	1 cut(s)	1211
AclWI	GGATC	6 cut(s)	645, 687, 812, 933, 1058, 2079
AcoI	YGGCCR	2 cut(s)	129, 1747
AcsI	RAATTY	6 cut(s)	8, 584, 916, 1031, 1674, 1911
AcuI	CTGAAG	2 cut(s)	656, 771
AcyI	GRCGYC	2 cut(s)	246, 385
AfaI	GTAC	3 cut(s)	477, 1966, 2010
AfiI	CCNNNNNNNGG	6 cut(s)	205, 342, 1010, 1359, 1739, 1843
AflII	CTTAAG	1 cut(s)	713
AgeI	ACCGGT	1 cut(s)	1250
AhdI	GACNNNNNGTC	1 cut(s)	172
AjnI	CCWGG	2 cut(s)	306, 874
AjuI	GAANNNNNNNTTGG	2 cut(s)	1722, 1754
Alw21I	GWGCWC	3 cut(s)	1411, 1776, 1862
Alw26I	GTCTC	2 cut(s)	392, 2150
Alw44I	GTGCAC	1 cut(s)	1858
AlwI	GGATC	6 cut(s)	645, 687, 812, 933, 1058, 2079
AlwNI	CAGNNNCTG	1 cut(s)	896
AoxI	GGCC	9 cut(s)	129, 156, 445, 702, 1012, 1510, 1557, 1747, 1790
ApaLI	GTGCAC	1 cut(s)	1858
ApeKI	GCWGC	9 cut(s)	321, 324, 456, 493, 962, 965, 1319, 1802, 1931
ApoI	RAATTY	6 cut(s)	8, 584, 916, 1031, 1674, 1911
ArsI	GACNNNNNNTTYG	2 cut(s)	1153, 1185
AsiGI	ACCGGT	1 cut(s)	1250
Asp718I	GGTACC	1 cut(s)	1964
AspA2I	CCTAGG	1 cut(s)	1127
AspLEI	GCGC	2 cut(s)	271, 461
AspS9I	GGNCC	5 cut(s)	157, 301, 333, 446, 857
AsuC2I	CCSGG	2 cut(s)	137, 453
AsuHPI	GGTGA	6 cut(s)	16, 613, 1073, 1187, 1439, 2056
AvaII	GGWCC	3 cut(s)	301, 333, 857
AvrII	CCTAGG	1 cut(s)	1127
AxyI	CCTNAGG	1 cut(s)	549
BaeGI	GKGCMC	1 cut(s)	1862
BanI	GGYRCC	2 cut(s)	1846, 1964
BanII	GRGCYC	1 cut(s)	211
BauI	CACGAG	1 cut(s)	1786
BbsI	GAAGAC	2 cut(s)	147, 1077
Bbv12I	GWGCWC	3 cut(s)	1411, 1776, 1862
BbvI	GCAGC	9 cut(s)	333, 336, 443, 505, 949, 977, 1306, 1789, 1918
BccI	CCATC	5 cut(s)	121, 868, 1741, 1893, 2175
BceAI	ACGGC	3 cut(s)	398, 446, 460
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	2 cut(s)	308, 876
BclI	TGATCA	1 cut(s)	1807
BcnI	CCSGG	2 cut(s)	137, 453
BcoDI	GTCTC	2 cut(s)	392, 2150
BfaI	CTAG	4 cut(s)	734, 758, 1128, 1794
BfmI	CTRYAG	3 cut(s)	693, 963, 2184
BfrI	CTTAAG	1 cut(s)	713
BglI	GCCNNNNNGGC	2 cut(s)	257, 453
BglII	AGATCT	2 cut(s)	754, 1388
BlnI	CCTAGG	1 cut(s)	1127
Bme1390I	CCNGG	4 cut(s)	137, 308, 453, 876
Bme18I	GGWCC	3 cut(s)	301, 333, 857
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmgT120I	GGNCC	5 cut(s)	157, 301, 333, 446, 857
BmiI	GGNNCC	6 cut(s)	197, 334, 1283, 1529, 1848, 1966
BmrFI	CCNGG	4 cut(s)	137, 308, 453, 876
BmrI	ACTGGG	1 cut(s)	627
BmsI	GCATC	4 cut(s)	575, 1324, 2111, 2189
BmuI	ACTGGG	1 cut(s)	627
BpiI	GAAGAC	2 cut(s)	147, 1077
BpmI	CTGGAG	3 cut(s)	290, 299, 1476
Bpu10I	CCTNAGC	1 cut(s)	1188
BpuEI	CTTGAG	3 cut(s)	257, 527, 545
BpuMI	CCSGG	2 cut(s)	137, 453
BsaBI	GATNNNNATC	1 cut(s)	822
BsaHI	GRCGYC	2 cut(s)	246, 385
BsaJI	CCNNGG	6 cut(s)	135, 705, 875, 1009, 1127, 2124
BsaWI	WCCGGW	2 cut(s)	335, 1250
BsaXI	ACNNNNNCTCC	2 cut(s)	1604, 1634
Bsc4I	CCNNNNNNNGG	6 cut(s)	205, 342, 1010, 1359, 1739, 1843
Bse118I	RCCGGY	2 cut(s)	218, 1250
Bse1I	ACTGG	3 cut(s)	622, 1044, 1493
Bse21I	CCTNAGG	1 cut(s)	549
Bse8I	GATNNNNATC	1 cut(s)	822
BseBI	CCWGG	2 cut(s)	308, 876
BseDI	CCNNGG	6 cut(s)	135, 705, 875, 1009, 1127, 2124
BseGI	GGATG	3 cut(s)	105, 1339, 1903
BseJI	GATNNNNATC	1 cut(s)	822
BseLI	CCNNNNNNNGG	6 cut(s)	205, 342, 1010, 1359, 1739, 1843
BseMII	CTCAG	5 cut(s)	540, 1010, 1035, 1329, 2065
BseNI	ACTGG	3 cut(s)	622, 1044, 1493
BseRI	GAGGAG	6 cut(s)	63, 68, 524, 993, 1625, 2149
BseSI	GKGCMC	1 cut(s)	1862
BseXI	GCAGC	9 cut(s)	333, 336, 443, 505, 949, 977, 1306, 1789, 1918
BseYI	CCCAGC	3 cut(s)	1329, 1636, 2002
BsgI	GTGCAG	2 cut(s)	882, 1615
Bsh1236I	CGCG	1 cut(s)	269
Bsh1285I	CGRYCG	1 cut(s)	294
BshFI	GGCC	9 cut(s)	131, 158, 447, 704, 1014, 1512, 1559, 1749, 1792
BshNI	GGYRCC	2 cut(s)	1846, 1964
BshTI	ACCGGT	1 cut(s)	1250
BsiEI	CGRYCG	1 cut(s)	294
BsiHKAI	GWGCWC	3 cut(s)	1411, 1776, 1862
BsiSI	CCGG	5 cut(s)	137, 219, 336, 453, 1251
BslFI	GGGAC	3 cut(s)	519, 634, 2075
BslI	CCNNNNNNNGG	6 cut(s)	205, 342, 1010, 1359, 1739, 1843
BsmAI	GTCTC	2 cut(s)	392, 2150
BsmBI	CGTCTC	1 cut(s)	392
BsmFI	GGGAC	3 cut(s)	519, 634, 2075
BsmI	GAATGC	1 cut(s)	1517
BsnI	GGCC	9 cut(s)	131, 158, 447, 704, 1014, 1512, 1559, 1749, 1792
Bsp1286I	GDGCHC	4 cut(s)	211, 1411, 1776, 1862
BspANI	GGCC	9 cut(s)	131, 158, 447, 704, 1014, 1512, 1559, 1749, 1792
BspCNI	CTCAG	5 cut(s)	541, 1011, 1036, 1330, 2064
BspFNI	CGCG	1 cut(s)	269
BspHI	TCATGA	1 cut(s)	1444
BspLI	GGNNCC	6 cut(s)	197, 334, 1283, 1529, 1848, 1966
BspMAI	CTGCAG	3 cut(s)	697, 967, 2188
BspPI	GGATC	6 cut(s)	645, 687, 812, 933, 1058, 2079
BspT107I	GGYRCC	2 cut(s)	1846, 1964
BspTI	CTTAAG	1 cut(s)	713
BsrBI	CCGCTC	1 cut(s)	635
BsrFI	RCCGGY	2 cut(s)	218, 1250
BsrI	ACTGG	3 cut(s)	622, 1044, 1493
BssAI	RCCGGY	2 cut(s)	218, 1250
BssECI	CCNNGG	6 cut(s)	135, 705, 875, 1009, 1127, 2124
BssNI	GRCGYC	2 cut(s)	246, 385
BssSI	CACGAG	1 cut(s)	1786
BssT1I	CCWWGG	3 cut(s)	705, 1009, 1127
Bst2BI	CACGAG	1 cut(s)	1786
Bst2UI	CCWGG	2 cut(s)	308, 876
Bst4CI	ACNGT	6 cut(s)	419, 533, 1275, 1815, 1864, 2026
Bst6I	CTCTTC	3 cut(s)	395, 1225, 1655
BstACI	GRCGYC	2 cut(s)	246, 385
BstAFI	CTTAAG	1 cut(s)	713
BstAPI	GCANNNNNTGC	1 cut(s)	1100
BstC8I	GCNNGC	6 cut(s)	207, 220, 449, 981, 1407, 1634
BstDEI	CTNAG	6 cut(s)	549, 1019, 1044, 1188, 1338, 2051
BstENI	CCTNNNNNAGG	1 cut(s)	1008
BstF5I	GGATG	3 cut(s)	105, 1339, 1903
BstFNI	CGCG	1 cut(s)	269
BstHHI	GCGC	2 cut(s)	271, 461
BstMAI	GTCTC	2 cut(s)	392, 2150
BstMCI	CGRYCG	1 cut(s)	294
BstNI	CCWGG	2 cut(s)	308, 876
BstNSI	RCATGY	2 cut(s)	520, 578
BstSCI	CCNGG	4 cut(s)	135, 306, 451, 874
BstSFI	CTRYAG	3 cut(s)	693, 963, 2184
BstSLI	GKGCMC	1 cut(s)	1862
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	9 cut(s)	333, 336, 443, 505, 949, 977, 1306, 1789, 1918
BstV2I	GAAGAC	2 cut(s)	147, 1077
BstX2I	RGATCY	5 cut(s)	679, 754, 925, 1063, 1388
BstYI	RGATCY	5 cut(s)	679, 754, 925, 1063, 1388
Bsu36I	CCTNAGG	1 cut(s)	549
BsuRI	GGCC	9 cut(s)	131, 158, 447, 704, 1014, 1512, 1559, 1749, 1792
BtsCI	GGATG	3 cut(s)	105, 1339, 1903
BtsIMutI	CAGTG	3 cut(s)	260, 588, 1037
Cac8I	GCNNGC	6 cut(s)	207, 220, 449, 981, 1407, 1634
CaiI	CAGNNNCTG	1 cut(s)	896
CciI	TCATGA	1 cut(s)	1444
CfoI	GCGC	2 cut(s)	271, 461
Cfr10I	RCCGGY	2 cut(s)	218, 1250
Cfr13I	GGNCC	5 cut(s)	157, 301, 333, 446, 857
CseI	GACGC	4 cut(s)	254, 374, 875, 2056
Csp6I	GTAC	3 cut(s)	476, 1965, 2009
CspAI	ACCGGT	1 cut(s)	1250
CspCI	CAANNNNNGTGG	2 cut(s)	2007, 2042
CviAII	CATG	4 cut(s)	517, 575, 1445, 1561
CviQI	GTAC	3 cut(s)	476, 1965, 2009
DdeI	CTNAG	6 cut(s)	549, 1019, 1044, 1188, 1338, 2051
DriI	GACNNNNNGTC	1 cut(s)	172
EaeI	YGGCCR	2 cut(s)	129, 1747
Eam1104I	CTCTTC	3 cut(s)	395, 1225, 1655
Eam1105I	GACNNNNNGTC	1 cut(s)	172
EarI	CTCTTC	3 cut(s)	395, 1225, 1655
EciI	GGCGGA	1 cut(s)	98
Eco130I	CCWWGG	3 cut(s)	705, 1009, 1127
Eco147I	AGGCCT	2 cut(s)	1014, 1792
Eco24I	GRGCYC	1 cut(s)	211
Eco32I	GATATC	1 cut(s)	999
Eco47I	GGWCC	3 cut(s)	301, 333, 857
Eco57I	CTGAAG	2 cut(s)	656, 771
Eco81I	CCTNAGG	1 cut(s)	549
EcoNI	CCTNNNNNAGG	1 cut(s)	1008
EcoO109I	RGGNCCY	2 cut(s)	157, 301
EcoRI	GAATTC	1 cut(s)	1031
EcoRII	CCWGG	2 cut(s)	306, 874
EcoRV	GATATC	1 cut(s)	999
EcoT14I	CCWWGG	3 cut(s)	705, 1009, 1127
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	3 cut(s)	705, 1009, 1127
Esp3I	CGTCTC	1 cut(s)	392
FaeI	CATG	4 cut(s)	520, 578, 1448, 1564
FaqI	GGGAC	3 cut(s)	519, 634, 2075
FatI	CATG	4 cut(s)	516, 574, 1444, 1560
FauI	CCCGC	4 cut(s)	99, 198, 421, 456
FauNDI	CATATG	1 cut(s)	1396
FbaI	TGATCA	1 cut(s)	1807
FokI	GGATG	3 cut(s)	92, 1346, 1910
FriOI	GRGCYC	1 cut(s)	211
FspBI	CTAG	4 cut(s)	734, 758, 1128, 1794
GlaI	GCGC	2 cut(s)	270, 460
GsaI	CCCAGC	3 cut(s)	1333, 1640, 2006
GsuI	CTGGAG	3 cut(s)	290, 299, 1476
HaeIII	GGCC	9 cut(s)	131, 158, 447, 704, 1014, 1512, 1559, 1749, 1792
HapII	CCGG	5 cut(s)	137, 219, 336, 453, 1251
HgaI	GACGC	4 cut(s)	254, 374, 875, 2056
HhaI	GCGC	2 cut(s)	271, 461
Hin1I	GRCGYC	2 cut(s)	246, 385
Hin1II	CATG	4 cut(s)	520, 578, 1448, 1564
Hin6I	GCGC	2 cut(s)	269, 459
HinP1I	GCGC	2 cut(s)	269, 459
HincII	GTYRAC	3 cut(s)	529, 580, 1201
HindII	GTYRAC	3 cut(s)	529, 580, 1201
HindIII	AAGCTT	2 cut(s)	668, 1548
HinfI	GANTC	8 cut(s)	143, 187, 805, 871, 1151, 1601, 1938, 2030
HpaII	CCGG	5 cut(s)	137, 219, 336, 453, 1251
HphI	GGTGA	6 cut(s)	16, 613, 1073, 1187, 1439, 2056
Hpy166II	GTNNAC	5 cut(s)	529, 580, 1201, 1860, 2009
Hpy188I	TCNGA	7 cut(s)	178, 238, 675, 817, 1020, 1881, 2054
Hpy188III	TCNNGA	9 cut(s)	184, 295, 506, 890, 1028, 1067, 1445, 1457, 2110
Hpy8I	GTNNAC	5 cut(s)	529, 580, 1201, 1860, 2009
Hpy99I	CGWCG	1 cut(s)	248
HpyCH4III	ACNGT	6 cut(s)	419, 533, 1275, 1815, 1864, 2026
HpyCH4IV	ACGT	3 cut(s)	474, 1211, 1626
HpyF3I	CTNAG	6 cut(s)	549, 1019, 1044, 1188, 1338, 2051
HpySE526I	ACGT	3 cut(s)	474, 1211, 1626
Hsp92I	GRCGYC	2 cut(s)	246, 385
Hsp92II	CATG	4 cut(s)	520, 578, 1448, 1564
HspAI	GCGC	2 cut(s)	269, 459
KpnI	GGTACC	1 cut(s)	1968
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	1807
LmnI	GCTCC	4 cut(s)	62, 153, 709, 1495
Lsp1109I	GCAGC	9 cut(s)	333, 336, 443, 505, 949, 977, 1306, 1789, 1918
LweI	GCATC	4 cut(s)	575, 1324, 2111, 2189
MaeI	CTAG	4 cut(s)	734, 758, 1128, 1794
MaeII	ACGT	3 cut(s)	474, 1211, 1626
MaeIII	GTNAC	6 cut(s)	44, 338, 541, 659, 1648, 2044
MbiI	CCGCTC	1 cut(s)	635
MfeI	CAATTG	1 cut(s)	852
MflI	RGATCY	5 cut(s)	679, 754, 925, 1063, 1388
MhlI	GDGCHC	4 cut(s)	211, 1411, 1776, 1862
MlyI	GAGTC	2 cut(s)	137, 1610
MmeI	TCCRAC	3 cut(s)	156, 216, 495
MroNI	GCCGGC	1 cut(s)	218
MseI	TTAA	8 cut(s)	213, 408, 714, 771, 921, 1277, 1656, 1854
MslI	CAYNNNNRTG	2 cut(s)	911, 1890
MspA1I	CMGCKG	1 cut(s)	1931
MspCI	CTTAAG	1 cut(s)	713
MspI	CCGG	5 cut(s)	137, 219, 336, 453, 1251
MspR9I	CCNGG	4 cut(s)	137, 308, 453, 876
MunI	CAATTG	1 cut(s)	852
Mva1269I	GAATGC	1 cut(s)	1517
MvaI	CCWGG	2 cut(s)	308, 876
MvnI	CGCG	1 cut(s)	269
NaeI	GCCGGC	1 cut(s)	220
NciI	CCSGG	2 cut(s)	137, 453
NdeI	CATATG	1 cut(s)	1396
NgoMIV	GCCGGC	1 cut(s)	218
NlaIII	CATG	4 cut(s)	520, 578, 1448, 1564
NlaIV	GGNNCC	6 cut(s)	197, 334, 1283, 1529, 1848, 1966
NmeAIII	GCCGAG	1 cut(s)	2149
NmuCI	GTSAC	3 cut(s)	44, 541, 2044
NspI	RCATGY	2 cut(s)	520, 578
PagI	TCATGA	1 cut(s)	1444
PceI	AGGCCT	2 cut(s)	1014, 1792
PctI	GAATGC	1 cut(s)	1517
PdiI	GCCGGC	1 cut(s)	220
PfeI	GAWTC	6 cut(s)	187, 805, 871, 1151, 1938, 2030
PflMI	CCANNNNNTGG	1 cut(s)	1739
PinAI	ACCGGT	1 cut(s)	1250
Ple19I	CGATCG	1 cut(s)	294
PleI	GAGTC	2 cut(s)	137, 1609
PpsI	GAGTC	2 cut(s)	137, 1609
PpuMI	RGGWCCY	1 cut(s)	301
Psp1406I	AACGTT	1 cut(s)	1211
Psp5II	RGGWCCY	1 cut(s)	301
Psp6I	CCWGG	2 cut(s)	306, 874
PspFI	CCCAGC	3 cut(s)	1329, 1636, 2002
PspGI	CCWGG	2 cut(s)	306, 874
PspN4I	GGNNCC	6 cut(s)	197, 334, 1283, 1529, 1848, 1966
PspPI	GGNCC	5 cut(s)	157, 301, 333, 446, 857
PspPPI	RGGWCCY	1 cut(s)	301
PstI	CTGCAG	3 cut(s)	697, 967, 2188
PstNI	CAGNNNCTG	1 cut(s)	896
PsuI	RGATCY	5 cut(s)	679, 754, 925, 1063, 1388
PvuI	CGATCG	1 cut(s)	294
RsaI	GTAC	3 cut(s)	477, 1966, 2010
RsaNI	GTAC	3 cut(s)	476, 1965, 2009
RseI	CAYNNNNRTG	2 cut(s)	911, 1890
SaqAI	TTAA	8 cut(s)	213, 408, 714, 771, 921, 1277, 1656, 1854
Sau96I	GGNCC	5 cut(s)	157, 301, 333, 446, 857
SchI	GAGTC	2 cut(s)	137, 1610
ScrFI	CCNGG	4 cut(s)	137, 308, 453, 876
SduI	GDGCHC	4 cut(s)	211, 1411, 1776, 1862
SfaNI	GCATC	4 cut(s)	575, 1324, 2111, 2189
SfcI	CTRYAG	3 cut(s)	693, 963, 2184
SinI	GGWCC	3 cut(s)	301, 333, 857
SmiMI	CAYNNNNRTG	2 cut(s)	911, 1890
SmlI	CTYRAG	4 cut(s)	272, 506, 560, 713
SmoI	CTYRAG	4 cut(s)	272, 506, 560, 713
SseBI	AGGCCT	2 cut(s)	1014, 1792
SspMI	CTAG	4 cut(s)	734, 758, 1128, 1794
StuI	AGGCCT	2 cut(s)	1014, 1792
StyD4I	CCNGG	4 cut(s)	135, 306, 451, 874
StyI	CCWWGG	3 cut(s)	705, 1009, 1127
TaaI	ACNGT	6 cut(s)	419, 533, 1275, 1815, 1864, 2026
TaiI	ACGT	3 cut(s)	477, 1214, 1629
TaqI	TCGA	7 cut(s)	183, 243, 290, 294, 368, 1970, 1990
TauI	GCSGC	5 cut(s)	124, 134, 251, 493, 2102
TfiI	GAWTC	6 cut(s)	187, 805, 871, 1151, 1938, 2030
Tru1I	TTAA	8 cut(s)	213, 408, 714, 771, 921, 1277, 1656, 1854
Tru9I	TTAA	8 cut(s)	213, 408, 714, 771, 921, 1277, 1656, 1854
TscAI	CASTG	3 cut(s)	267, 595, 1044
TseFI	GTSAC	3 cut(s)	44, 541, 2044
TseI	GCWGC	9 cut(s)	321, 324, 456, 493, 962, 965, 1319, 1802, 1931
Tsp45I	GTSAC	3 cut(s)	44, 541, 2044
TspDTI	ATGAA	7 cut(s)	10, 94, 1213, 1221, 1317, 1461, 1577
TspGWI	ACGGA	4 cut(s)	1157, 1274, 1430, 2069
TspRI	CASTG	3 cut(s)	267, 595, 1044
Van91I	CCANNNNNTGG	1 cut(s)	1739
Vha464I	CTTAAG	1 cut(s)	713
VneI	GTGCAC	1 cut(s)	1858
VpaK11BI	GGWCC	3 cut(s)	301, 333, 857
XagI	CCTNNNNNAGG	1 cut(s)	1008
XapI	RAATTY	6 cut(s)	8, 584, 916, 1031, 1674, 1911
XceI	RCATGY	2 cut(s)	520, 578
XmaJI	CCTAGG	1 cut(s)	1127
XspI	CTAG	4 cut(s)	734, 758, 1128, 1794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.