Rh1DG295900

Glycine--tRNA ligase 1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
52153119 .. 52154216
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG295900.1

Sequence Viewer

Length: 1098 bp
ATGTTCCCAAGGGATGAACAAAAGCCCGGCAAATCTGCAAGATTAATCTCTCTGGGGGAAGCAGTGCATTCTAAGATTATGGAGAATGAAACTTTTGGCTACTTCATTGGGAGAGTATATCTCTTCCTCACTCGTCTAGGTATAGACAAGAACCGTATAAGGTTCAGGCAACACCTTGCTAAAGAGATGGCTCACTATGTTGCTGACTGCTGGGATGCTGAGATTGAGACTTCCTATGGCTGGATTGAGTGCGTCGGTATTGCAGATAGATCTGTATGTGACTTGAAGGCTCATTCGGGGAAAAGTCGTCTCGAGGCACATGAACAACTTTCAGAACCAAGAGAAGTGGAGAAATTGGTTATATCTCCGGTAAAGAAAGAGATTGGCCCTGCTTTCGAGAAGAAGCAAAAGAATGTGCTTGAAGCTTTGGAGGCTATGGATGAAGAAGAAATTTCAAAAATGAAGGCCGAGTTAGACTCCAAGGGGGAGGTGGACTTCTTTGTCTGCACTCTTGGGGAACATGTGTCTATTAAGAGCAGTATGGTGACAATTTCAAAGGTTAAAACAAGAGAACATCAAAGAAAATTCACACCCTCAGTAATCGAGCCTTCATTTGGTATTGGGAGGATTATATATTGTCTCTTTGAGCATTCCTTCTACACCAGACCAGATAAAACTGGGGATGAACAATTGAATGTGTTTCGGTTTAACCCACTTGTGGCGCCTTTTAAGTGCACAGTTTTCCCTCTGGTTCGGAACCAACAGTTTGAGTATGTTGCTAAGGACATTTCCAGGTCATTGACTGCTGCTGGCATATCGCATAAAAAGGATATTACAGGTACCTCGATTGGGAAACGTTATGCACGTACTGATGAGCTCGGTGTACCCTTTGCAATCACGGTTGATTCTACATCCTCGGTCACAATTCGAGAAAGAGACAGCAAAGATCAAATCCGAGTTAGTGTGAAGAAGGCAGTATCTGTTGTGAAGGAGCTCAGTGAGGGGTTGAGGACTTGGGAAGATGTGTGGTGGTCACCTAGTCAACGGTGGAAGAGATTCTGGCGTTCCTGCTTCAAATTTATATTGTCTAGAAACTAA

Protein Analysis

365

Amino Acids

41.96

Weight (kDa)

8.99

Isoelectric Point (pI)

43.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HGTP_anticodon PF03129 244 - 332 1.4e-18 Anticodon binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 500
Acc65I GGTACC 1 cut(s) 839
AccB1I GGYRCC 2 cut(s) 721, 839
AclI AACGTT 1 cut(s) 856
AcsI RAATTY 3 cut(s) 450, 584, 1076
AcyI GRCGYC 1 cut(s) 722
AfaI GTAC 3 cut(s) 841, 868, 885
AfiI CCNNNNNNNGG 4 cut(s) 240, 614, 718, 849
AflIII ACRYGT 1 cut(s) 520
AgsI TTSAA 6 cut(s) 286, 422, 456, 555, 694, 1075
AjnI CCWGG 1 cut(s) 791
AluBI AGCT 3 cut(s) 425, 877, 994
AluI AGCT 3 cut(s) 425, 877, 994
Alw21I GWGCWC 3 cut(s) 737, 879, 996
Alw26I GTCTC 4 cut(s) 221, 314, 644, 930
Alw44I GTGCAC 1 cut(s) 733
AlwNI CAGNNNCTG 1 cut(s) 980
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 2 cut(s) 385, 465
ApaLI GTGCAC 1 cut(s) 733
ApeKI GCWGC 1 cut(s) 806
ApoI RAATTY 3 cut(s) 450, 584, 1076
AseI ATTAAT 1 cut(s) 44
Asp700I GAANNNNTTC 1 cut(s) 1055
Asp718I GGTACC 1 cut(s) 839
AspLEI GCGC 1 cut(s) 724
AspS9I GGNCC 1 cut(s) 386
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 2 cut(s) 556, 1026
AvaI CYCGRG 1 cut(s) 311
BaeGI GKGCMC 1 cut(s) 737
BanI GGYRCC 2 cut(s) 721, 839
BanII GRGCYC 2 cut(s) 879, 996
Bbv12I GWGCWC 3 cut(s) 737, 879, 996
BbvI GCAGC 1 cut(s) 793
BccI CCATC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 793
BcnI CCSGG 1 cut(s) 27
BcoDI GTCTC 4 cut(s) 221, 314, 644, 930
BfaI CTAG 3 cut(s) 137, 1038, 1089
BfoI RGCGCY 1 cut(s) 725
BglII AGATCT 1 cut(s) 269
BisI GCNGC 1 cut(s) 807
BlsI GCNGC 1 cut(s) 808
Bme1390I CCNGG 2 cut(s) 27, 793
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 386
BmiI GGNNCC 3 cut(s) 723, 758, 841
BmrFI CCNGG 2 cut(s) 27, 793
BmrI ACTGGG 1 cut(s) 687
BmsI GCATC 1 cut(s) 205
BmuI ACTGGG 1 cut(s) 687
BplI GAGNNNNNCTC 4 cut(s) 105, 137, 461, 493
Bpu10I CCTNAGC 1 cut(s) 780
BpuMI CCSGG 1 cut(s) 27
BsaAI YACGTR 1 cut(s) 866
BsaHI GRCGYC 1 cut(s) 722
BsaJI CCNNGG 3 cut(s) 8, 480, 915
BsaWI WCCGGW 1 cut(s) 367
Bsc4I CCNNNNNNNGG 4 cut(s) 240, 614, 718, 849
Bse1I ACTGG 1 cut(s) 682
BseBI CCWGG 1 cut(s) 793
BseDI CCNNGG 3 cut(s) 8, 480, 915
BseGI GGATG 5 cut(s) 19, 220, 445, 688, 911
BseLI CCNNNNNNNGG 4 cut(s) 240, 614, 718, 849
BseMII CTCAG 3 cut(s) 210, 609, 1009
BseNI ACTGG 1 cut(s) 682
BseSI GKGCMC 1 cut(s) 737
BseXI GCAGC 1 cut(s) 793
BseYI CCCAGC 1 cut(s) 210
BsgI GTGCAG 1 cut(s) 490
BshFI GGCC 2 cut(s) 387, 467
BshNI GGYRCC 2 cut(s) 721, 839
BsiHKAI GWGCWC 3 cut(s) 737, 879, 996
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 2 cut(s) 27, 368
BslI CCNNNNNNNGG 4 cut(s) 240, 614, 718, 849
BsmAI GTCTC 4 cut(s) 221, 314, 644, 930
BsmBI CGTCTC 1 cut(s) 314
BsmI GAATGC 2 cut(s) 67, 649
BsnI GGCC 2 cut(s) 387, 467
BsoBI CYCGRG 1 cut(s) 311
Bsp1286I GDGCHC 3 cut(s) 737, 879, 996
Bsp143I GATC 2 cut(s) 269, 946
BspANI GGCC 2 cut(s) 387, 467
BspCNI CTCAG 3 cut(s) 211, 608, 1008
BspLI GGNNCC 3 cut(s) 723, 758, 841
BspT107I GGYRCC 2 cut(s) 721, 839
BsrI ACTGG 1 cut(s) 682
BssECI CCNNGG 3 cut(s) 8, 480, 915
BssMI GATC 2 cut(s) 269, 946
BssNI GRCGYC 1 cut(s) 722
BssT1I CCWWGG 2 cut(s) 8, 480
Bst2UI CCWGG 1 cut(s) 793
Bst4CI ACNGT 5 cut(s) 155, 739, 765, 901, 1047
Bst6I CTCTTC 2 cut(s) 128, 1046
BstACI GRCGYC 1 cut(s) 722
BstBAI YACGTR 1 cut(s) 866
BstC8I GCNNGC 1 cut(s) 811
BstDEI CTNAG 5 cut(s) 72, 219, 595, 780, 995
BstEII GGTNACC 1 cut(s) 1032
BstF5I GGATG 5 cut(s) 19, 220, 445, 688, 911
BstH2I RGCGCY 1 cut(s) 725
BstHHI GCGC 1 cut(s) 724
BstKTI GATC 2 cut(s) 272, 949
BstMAI GTCTC 4 cut(s) 221, 314, 644, 930
BstMBI GATC 2 cut(s) 269, 946
BstMWI GCNNNNNNNGC 1 cut(s) 431
BstNI CCWGG 1 cut(s) 793
BstNSI RCATGY 1 cut(s) 524
BstPI GGTNACC 1 cut(s) 1032
BstSCI CCNGG 2 cut(s) 25, 791
BstSLI GKGCMC 1 cut(s) 737
BstV1I GCAGC 1 cut(s) 793
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 2 cut(s) 387, 467
BtsCI GGATG 5 cut(s) 19, 220, 445, 688, 911
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 2 cut(s) 69, 1003
Cac8I GCNNGC 1 cut(s) 811
CaiI CAGNNNCTG 1 cut(s) 980
CfoI GCGC 1 cut(s) 724
Cfr13I GGNCC 1 cut(s) 386
CseI GACGC 1 cut(s) 241
Csp6I GTAC 3 cut(s) 840, 867, 884
CspCI CAANNNNNGTGG 2 cut(s) 327, 362
CviAII CATG 2 cut(s) 320, 521
CviQI GTAC 3 cut(s) 840, 867, 884
DdeI CTNAG 5 cut(s) 72, 219, 595, 780, 995
DinI GGCGCC 1 cut(s) 723
DpnI GATC 2 cut(s) 271, 948
DpnII GATC 2 cut(s) 269, 946
DrdI GACNNNNNNGTC 1 cut(s) 500
DseDI GACNNNNNNGTC 1 cut(s) 500
Eam1104I CTCTTC 2 cut(s) 128, 1046
EarI CTCTTC 2 cut(s) 128, 1046
Ecl136II GAGCTC 2 cut(s) 877, 994
Eco130I CCWWGG 2 cut(s) 8, 480
Eco24I GRGCYC 2 cut(s) 879, 996
Eco53kI GAGCTC 2 cut(s) 877, 994
Eco88I CYCGRG 1 cut(s) 311
Eco91I GGTNACC 1 cut(s) 1032
EcoICRI GAGCTC 2 cut(s) 877, 994
EcoO65I GGTNACC 1 cut(s) 1032
EcoRII CCWGG 1 cut(s) 791
EcoT14I CCWWGG 2 cut(s) 8, 480
EcoT38I GRGCYC 2 cut(s) 879, 996
EgeI GGCGCC 1 cut(s) 723
EheI GGCGCC 1 cut(s) 723
ErhI CCWWGG 2 cut(s) 8, 480
Esp3I CGTCTC 1 cut(s) 314
FaeI CATG 2 cut(s) 323, 524
FatI CATG 2 cut(s) 319, 520
Fnu4HI GCNGC 1 cut(s) 807
FokI GGATG 5 cut(s) 26, 227, 452, 695, 898
FriOI GRGCYC 2 cut(s) 879, 996
Fsp4HI GCNGC 1 cut(s) 807
FspBI CTAG 3 cut(s) 137, 1038, 1089
GlaI GCGC 1 cut(s) 723
GluI GCNGC 1 cut(s) 807
GsaI CCCAGC 1 cut(s) 214
HaeII RGCGCY 1 cut(s) 725
HaeIII GGCC 2 cut(s) 387, 467
HapII CCGG 2 cut(s) 27, 368
HgaI GACGC 1 cut(s) 241
HhaI GCGC 1 cut(s) 724
Hin1I GRCGYC 1 cut(s) 722
Hin1II CATG 2 cut(s) 323, 524
Hin6I GCGC 1 cut(s) 722
HinP1I GCGC 1 cut(s) 722
HincII GTYRAC 1 cut(s) 1043
HindII GTYRAC 1 cut(s) 1043
HindIII AAGCTT 1 cut(s) 423
HinfI GANTC 3 cut(s) 476, 905, 1056
HpaII CCGG 2 cut(s) 27, 368
HphI GGTGA 2 cut(s) 556, 1026
Hpy166II GTNNAC 4 cut(s) 493, 735, 884, 1043
Hpy188I TCNGA 3 cut(s) 334, 756, 956
Hpy188III TCNNGA 4 cut(s) 311, 397, 929, 1089
Hpy8I GTNNAC 4 cut(s) 493, 735, 884, 1043
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 6 cut(s) 280, 457, 618, 664, 964, 982
HpyCH4III ACNGT 5 cut(s) 155, 739, 765, 901, 1047
HpyCH4IV ACGT 2 cut(s) 856, 865
HpyCH4V TGCA 7 cut(s) 38, 67, 263, 507, 735, 863, 893
HpyF10VI GCNNNNNNNGC 1 cut(s) 431
HpyF3I CTNAG 5 cut(s) 72, 219, 595, 780, 995
HpySE526I ACGT 2 cut(s) 856, 865
Hsp92I GRCGYC 1 cut(s) 722
Hsp92II CATG 2 cut(s) 323, 524
HspAI GCGC 1 cut(s) 722
KasI GGCGCC 1 cut(s) 721
KpnI GGTACC 1 cut(s) 843
Kzo9I GATC 2 cut(s) 269, 946
LmnI GCTCC 1 cut(s) 991
Lsp1109I GCAGC 1 cut(s) 793
LweI GCATC 1 cut(s) 205
MaeI CTAG 3 cut(s) 137, 1038, 1089
MaeII ACGT 2 cut(s) 856, 865
MaeIII GTNAC 4 cut(s) 278, 544, 919, 1032
MalI GATC 2 cut(s) 271, 948
MboI GATC 2 cut(s) 269, 946
MboII GAAGA 7 cut(s) 115, 412, 455, 458, 979, 1031, 1063
MfeI CAATTG 1 cut(s) 689
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 3 cut(s) 737, 879, 996
MluCI AATT 7 cut(s) 353, 450, 549, 584, 689, 924, 1076
Mly113I GGCGCC 1 cut(s) 722
MlyI GAGTC 1 cut(s) 470
MroXI GAANNNNTTC 1 cut(s) 1055
MseI TTAA 5 cut(s) 44, 531, 561, 708, 729
MspI CCGG 2 cut(s) 27, 368
MspR9I CCNGG 2 cut(s) 27, 793
MunI CAATTG 1 cut(s) 689
Mva1269I GAATGC 2 cut(s) 67, 649
MvaI CCWGG 1 cut(s) 793
MwoI GCNNNNNNNGC 1 cut(s) 431
NarI GGCGCC 1 cut(s) 722
NciI CCSGG 1 cut(s) 27
NdeII GATC 2 cut(s) 269, 946
NlaIII CATG 2 cut(s) 323, 524
NlaIV GGNNCC 3 cut(s) 723, 758, 841
NmeAIII GCCGAG 1 cut(s) 493
NmuCI GTSAC 4 cut(s) 278, 544, 919, 1032
NspI RCATGY 1 cut(s) 524
PaeR7I CTCGAG 1 cut(s) 311
PciI ACATGT 1 cut(s) 520
PcsI WCGNNNNNNNCGW 1 cut(s) 862
PctI GAATGC 2 cut(s) 67, 649
PdmI GAANNNNTTC 1 cut(s) 1055
PfeI GAWTC 2 cut(s) 905, 1056
PkrI GCNGC 1 cut(s) 808
PleI GAGTC 1 cut(s) 470
PluTI GGCGCC 1 cut(s) 725
PpsI GAGTC 1 cut(s) 470
Ppu21I YACGTR 1 cut(s) 866
PscI ACATGT 1 cut(s) 520
PshBI ATTAAT 1 cut(s) 44
Psp124BI GAGCTC 2 cut(s) 879, 996
Psp1406I AACGTT 1 cut(s) 856
Psp6I CCWGG 1 cut(s) 791
PspEI GGTNACC 1 cut(s) 1032
PspFI CCCAGC 1 cut(s) 210
PspGI CCWGG 1 cut(s) 791
PspN4I GGNNCC 3 cut(s) 723, 758, 841
PspPI GGNCC 1 cut(s) 386
PstNI CAGNNNCTG 1 cut(s) 980
PsuI RGATCY 1 cut(s) 269
RsaI GTAC 3 cut(s) 841, 868, 885
RsaNI GTAC 3 cut(s) 840, 867, 884
SacI GAGCTC 2 cut(s) 879, 996
SaqAI TTAA 5 cut(s) 44, 531, 561, 708, 729
SatI GCNGC 1 cut(s) 807
Sau3AI GATC 2 cut(s) 269, 946
Sau96I GGNCC 1 cut(s) 386
SchI GAGTC 1 cut(s) 470
ScrFI CCNGG 2 cut(s) 27, 793
SduI GDGCHC 3 cut(s) 737, 879, 996
SfaNI GCATC 1 cut(s) 205
SfoI GGCGCC 1 cut(s) 723
Sfr274I CTCGAG 1 cut(s) 311
SlaI CTCGAG 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 7 cut(s) 353, 450, 549, 584, 689, 924, 1076
SspDI GGCGCC 1 cut(s) 721
SspMI CTAG 3 cut(s) 137, 1038, 1089
SstI GAGCTC 2 cut(s) 879, 996
StyD4I CCNGG 2 cut(s) 25, 791
StyI CCWWGG 2 cut(s) 8, 480
TaaI ACNGT 5 cut(s) 155, 739, 765, 901, 1047
TaiI ACGT 2 cut(s) 859, 868
TaqI TCGA 5 cut(s) 312, 396, 603, 845, 928
TaqII GACCGA 1 cut(s) 907
TasI AATT 7 cut(s) 353, 450, 549, 584, 689, 924, 1076
TfiI GAWTC 2 cut(s) 905, 1056
Tru1I TTAA 5 cut(s) 44, 531, 561, 708, 729
Tru9I TTAA 5 cut(s) 44, 531, 561, 708, 729
TscAI CASTG 2 cut(s) 69, 1003
TseFI GTSAC 4 cut(s) 278, 544, 919, 1032
TseI GCWGC 1 cut(s) 806
Tsp45I GTSAC 4 cut(s) 278, 544, 919, 1032
TspDTI ATGAA 8 cut(s) 30, 94, 102, 336, 456, 476, 600, 699
TspRI CASTG 2 cut(s) 69, 1003
VneI GTGCAC 1 cut(s) 733
VspI ATTAAT 1 cut(s) 44
XapI RAATTY 3 cut(s) 450, 584, 1076
XbaI TCTAGA 1 cut(s) 1088
XceI RCATGY 1 cut(s) 524
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XhoI CTCGAG 1 cut(s) 311
XmnI GAANNNNTTC 1 cut(s) 1055
XspI CTAG 3 cut(s) 137, 1038, 1089
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.