Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001310

Physical Location & Seq

Genomic Coordinates Reverse (-)

39104538 .. 39109326

Gene Structure 4789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0227400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2031 bp

ATGCAAGGCCTCGTCGGCTTGGTCCGCGAGTCCCTTGACTTCCGGACCAGCGGACTCGTCGACAAGATCGGCTCCAGCATTAGAAAATCGCGAATCGGGCTTTTCGCTAGGCCTCCGGCGCCGCGTGCGCTTCCTCCGGTGGTCCCCGATGACGATGCGCTGCCGATTCGGTGGCGCAAGGGCGAGTTGATTGGGTCTGGTGCCTTCGGGCGGGTCTATATGGGGATGAATCTCGATTCCGGAGAGCTTATTGCCGTGAAACAGGTTTCGATTGCCGCAAGTAGTGCTTCAAAGGAGAAGACACAGGCTCATATTCGAGAGTTGGAGGAGGAAGTGAGGCTTCTTAAGAATCTTTCACACCCAAACATTGTTAGGTACTTGGGGACTGCTAGAGAAGCCGATTCGTTGAATATTCTGTTGGAGTTTGTGCCAGGTGGATCCATATCCTCCCTCTTGGGAAAATTTGGGTCCTTTCCCGAGTCTGTTATAAGAATGTACACAAAGCAACTGTTATTGGGCCTTGAATACCTACACAAGAATGGAATTATGCATAGGGACATCAAGGGTGCAAACATCCTTGTTGATAATAAGGGGTGCATTAAACTTGCAGACTTTGGTGCATCGAAGAAAGTTGTTGAACTGGCCACTATAAATGGTGCCAAGTCAATGAAGGGAACTCCGTATTGGATGGCTCCGGAAGTTATTCTCCAGACTGGCCATAGTTTCTCTGCTGACATATGGAGTGTTGGATGTACTGTGATTGAGATGGCTACCGGAAAGCCTCCATGGAGCCAACAGTATCAGGAGGTTGCTGCTCTCTTCCATATTGGAACAACAAAATCTCATCCACCCATTCCTGAGCATCTCTCTGCTGAGGCAAAGGATTTTCTATTAAAATGTCTAGAGAAGGAACCTGACTTCAGGTCTGCTGCGTCAGAACTGCTGCAGCACCCATTTGTCACTGGGGATTATCAGGAACCTCGCTCAGCATTACGCACTTCAGTTATGGAAGCTGGAAACCATATGGCAACACCTGGGACCAATCTTAAGAACTCCATGAACGTTTCGATCAGAAGGTCAACCTGTGCAGGCTTGAAGGATATTTGCGACATGGGTAGTGTAAGGTGCTCAACTGTATACCCCAACAATATTTCAGGAGGGAGCTCCTGCTGGGGAGCAAATAATACTGATGATGACATGTGTCAGCTTGATGATTCTGATGATATAATGCTTGGTTCATTTGTAAAATTTAATTCTGTGATGGCATCAGGTGGATTAAACAAGAGTTTCAATCACATGTGTGAACCAACTGATGACTGGCAATGTAAGTTTGATGAAAGTCTGGAGTTGAGAAAAAGTGGAATGAACTTGCCCCCTTGTCAAACAATACATGAGGCTTCAAGCAGCGCTGGAGCATCTCATAAGGTGGAGAATGAATTCACATTTCCTTGTGGTCCATCAGTGGCTGAGGATGATGAGGAAGTCACAGAAATGAAAATAAGAGCCTTCCTAGATGAAAAGGCATTAGATCTGAAGAAGCTGCAGACACCGTTATTTGAAGAATTCTTTAGTACTTTGAATGCAGCTGGTCCCCCAGGTGCAATTGGAAATGCAAATTGTGATCGTGTTTCAAATAATCTGCATTTACCTCCTAAAAGCAAGTCACCCAGTCGGGCACCTAGTAGAAGATTCTCTGCAATAGTTGGAACTGTCAATGGTTCACGCTTCGGGAAACACACCCTAAATGTATCAAATGCAAGTGGTGTGCATAGTCATATCTTACAGGAAATTCAGCCGCCTCAGCTTAGTGAACGGAAAGGGCCTCTTGATGCTCAGAAAGATTCACTTAGTGCAAGTGCAAGTTTTTCCGAGTTGCAAAGGAGGTGGAAAGAGGAGCTTGACGAAGAATTAGAGAGGAAGCGAGAGATGAAACGCAAGGCTGGTTTAGGGATGAATACATCACCATCTCCAAACAACCGGATTATTAGTCGACAAAGAGAGCAGCAATGGGGTGTTTTCTCCACAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

676

Amino Acids

74.13

Weight (kDa)

7.25

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	59 - 320	7.2e-73	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	61 - 316	5.6e-46	Protein tyrosine and serine/threonine kinase
Pkinase_fungal	PF17667	173 - 248	8.4e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29880
fragaria_vesca	FvH4_4g22441 FvH4_4g22450 FvH4_4g22450 FvH4_4g22610 FvH4_4g22610
malus_domestica	MD13G1131000.v1.1 MD13G1145800.v1.1 MD16G1141200.v1.1
prunus_persica	Prupe.1G214600_v2.0.a1
pyrus_communis	pycom13g11430 pycom13g12530 pycom16g11160 pycom16g11170
rosa_chinensis	RchiOBHm_Chr1g0361881 RchiOBHm_Chr4g0428711 RchiOBHm_Chr4g0428851
rosa_laevigata	RLG00000007120 RLG00000007133 RLG00000027689 RLG00000027690 RLG00000027694
rosa_multiflora	Rmu_co8208336.1_g000001 Rmu_co8210234.1_g000001 Rmu_sc0003316.1_g000006 Rmu_sc0008612.1_g000003 Rmu_sc0018216.1_g000001 Rmu_ssc0000124.1_g000013
rosa_roxburghii	Rroxscaffold_4G00294630 Rroxscaffold_5G00370530
rosa_rugosa	Rorug01G0292100 Rorug04G0227400 Rorug04G0227500 Rorug04G0229700
rosa_samantha	Rh1AG302800 Rh1BG265900 Rh1BG266000 Rh1CG284000 Rh1DG295900 Rh1DG296000 Rh4AG284700 Rh4AG284900 Rh4AG286400 Rh4BG290700 Rh4BG290900 Rh4BG292200 Rh4CG308200 Rh4DG288200 Rh4DG289400
rosa_wichuraiana	Rw0G020620 Rw1G026830 Rw4G024720 Rw4G024830 Rw7G040280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	488
AccB1I	GGYRCC	4 cut(s)	118, 200, 656, 1675
AccI	GTMKAC	3 cut(s)	60, 1137, 1990
AccII	CGCG	3 cut(s)	27, 91, 124
AccIII	TCCGGA	3 cut(s)	42, 239, 694
AciI	CCGC	6 cut(s)	25, 51, 122, 211, 276, 1796
AclI	AACGTT	1 cut(s)	1062
AclWI	GGATC	2 cut(s)	432, 445
AcoI	YGGCCR	2 cut(s)	642, 715
AcsI	RAATTY	5 cut(s)	461, 1247, 1436, 1562, 1788
AcuI	CTGAAG	3 cut(s)	904, 984, 1553
AcyI	GRCGYC	1 cut(s)	119
AdeI	CACNNNGTG	1 cut(s)	1850
AfaI	GTAC	4 cut(s)	377, 497, 754, 1573
AfeI	AGCGCT	1 cut(s)	1408
AfiI	CCNNNNNNNGG	1 cut(s)	210
AflII	CTTAAG	2 cut(s)	344, 1046
AflIII	ACRYGT	2 cut(s)	1197, 1296
AhdI	GACNNNNNGTC	1 cut(s)	922
AjnI	CCWGG	3 cut(s)	430, 1033, 1594
AjuI	GAANNNNNNNTTGG	4 cut(s)	401, 433, 667, 699
AleI	CACNNNNGTG	1 cut(s)	1299
AluBI	AGCT	8 cut(s)	247, 1013, 1164, 1207, 1540, 1586, 1804, 1897
AluI	AGCT	8 cut(s)	247, 1013, 1164, 1207, 1540, 1586, 1804, 1897
Alw21I	GWGCWC	2 cut(s)	1130, 1166
AlwI	GGATC	2 cut(s)	432, 445
AlwNI	CAGNNNCTG	1 cut(s)	1466
Ama87I	CYCGRG	1 cut(s)	476
Aor13HI	TCCGGA	3 cut(s)	42, 239, 694
Aor51HI	AGCGCT	1 cut(s)	1408
AoxI	GGCC	6 cut(s)	7, 110, 517, 642, 715, 1820
ApeKI	GCWGC	9 cut(s)	160, 812, 929, 943, 946, 1404, 1540, 1583, 2002
ApoI	RAATTY	5 cut(s)	461, 1247, 1436, 1562, 1788
Asp700I	GAANNNNTTC	2 cut(s)	702, 1436
AspLEI	GCGC	5 cut(s)	121, 130, 160, 177, 1409
AspS9I	GGNCC	9 cut(s)	22, 45, 142, 468, 517, 1038, 1454, 1589, 1820
AsuHPI	GGTGA	2 cut(s)	1656, 1953
AvaI	CYCGRG	1 cut(s)	476
AvaII	GGWCC	7 cut(s)	22, 45, 142, 468, 1038, 1454, 1589
BaeGI	GKGCMC	1 cut(s)	1678
BalI	TGGCCA	2 cut(s)	644, 717
BamHI	GGATCC	1 cut(s)	437
BanI	GGYRCC	4 cut(s)	118, 200, 656, 1675
BanII	GRGCYC	1 cut(s)	1166
BbsI	GAAGAC	1 cut(s)	305
Bbv12I	GWGCWC	2 cut(s)	1130, 1166
BbvCI	CCTCAGC	3 cut(s)	873, 1467, 1800
BbvI	GCAGC	9 cut(s)	147, 799, 916, 930, 958, 1416, 1527, 1595, 2014
BccI	CCATC	5 cut(s)	682, 760, 1255, 1465, 1972
BceAI	ACGGC	1 cut(s)	239
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BciT130I	CCWGG	3 cut(s)	432, 1035, 1596
BfaI	CTAG	5 cut(s)	108, 390, 902, 1511, 1680
BfmI	CTRYAG	2 cut(s)	944, 1541
BfoI	RGCGCY	2 cut(s)	122, 1410
BfrI	CTTAAG	2 cut(s)	344, 1046
BglI	GCCNNNNNGGC	1 cut(s)	15
BglII	AGATCT	1 cut(s)	1528
BlpI	GCTNAGC	1 cut(s)	985
BmcAI	AGTACT	1 cut(s)	1573
Bme1390I	CCNGG	3 cut(s)	432, 1035, 1596
Bme18I	GGWCC	7 cut(s)	22, 45, 142, 468, 1038, 1454, 1589
BmeRI	GACNNNNNGTC	1 cut(s)	922
BmeT110I	CYCGRG	1 cut(s)	476
BmgT120I	GGNCC	9 cut(s)	22, 45, 142, 468, 517, 1038, 1454, 1589, 1820
BmrFI	CCNGG	3 cut(s)	432, 1035, 1596
BmrI	ACTGGG	2 cut(s)	972, 1662
BmsI	GCATC	6 cut(s)	145, 629, 871, 1274, 1424, 1819
BmuI	ACTGGG	2 cut(s)	972, 1662
BoxI	GACNNNNGTC	1 cut(s)	1200
BpiI	GAAGAC	1 cut(s)	305
BplI	GAGNNNNNCTC	2 cut(s)	851, 883
BpmI	CTGGAG	4 cut(s)	58, 692, 1364, 1431
Bpu10I	CCTNAGC	4 cut(s)	858, 873, 1467, 1800
Bpu1102I	GCTNAGC	1 cut(s)	985
BsaBI	GATNNNNATC	1 cut(s)	442
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	3 cut(s)	785, 1034, 1594
BsaWI	WCCGGW	6 cut(s)	42, 136, 239, 694, 773, 1977
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse1I	ACTGG	5 cut(s)	645, 718, 967, 1322, 1668
Bse3DI	GCAATG	2 cut(s)	1328, 2012
Bse8I	GATNNNNATC	1 cut(s)	442
BseAI	TCCGGA	3 cut(s)	42, 239, 694
BseBI	CCWGG	3 cut(s)	432, 1035, 1596
BseDI	CCNNGG	3 cut(s)	785, 1034, 1594
BseGI	GGATG	7 cut(s)	231, 573, 693, 755, 844, 1477, 1956
BseJI	GATNNNNATC	1 cut(s)	442
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMI	GCAATG	2 cut(s)	1328, 2012
BseMII	CTCAG	6 cut(s)	849, 864, 999, 1458, 1814, 1847
BseNI	ACTGG	5 cut(s)	645, 718, 967, 1322, 1668
BseRI	GAGGAG	2 cut(s)	341, 1907
BseSI	GKGCMC	1 cut(s)	1678
BseXI	GCAGC	9 cut(s)	147, 799, 916, 930, 958, 1416, 1527, 1595, 2014
BseYI	CCCAGC	1 cut(s)	1170
BsgI	GTGCAG	1 cut(s)	1107
Bsh1236I	CGCG	3 cut(s)	27, 91, 124
BshFI	GGCC	6 cut(s)	9, 112, 519, 644, 717, 1822
BshNI	GGYRCC	4 cut(s)	118, 200, 656, 1675
BsiHKAI	GWGCWC	2 cut(s)	1130, 1166
BsiHKCI	CYCGRG	1 cut(s)	476
BsiSI	CCGG	7 cut(s)	43, 116, 137, 240, 695, 774, 1978
BslFI	GGGAC	6 cut(s)	16, 128, 397, 569, 1051, 1575
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmFI	GGGAC	6 cut(s)	16, 128, 397, 569, 1051, 1575
BsmI	GAATGC	1 cut(s)	1585
BsnI	GGCC	6 cut(s)	9, 112, 519, 644, 717, 1822
BsoBI	CYCGRG	1 cut(s)	476
Bsp1286I	GDGCHC	3 cut(s)	1130, 1166, 1678
Bsp13I	TCCGGA	3 cut(s)	42, 239, 694
Bsp1407I	TGTACA	1 cut(s)	495
Bsp143I	GATC	5 cut(s)	66, 437, 1068, 1528, 1621
Bsp1720I	GCTNAGC	1 cut(s)	985
Bsp19I	CCATGG	1 cut(s)	785
Bsp68I	TCGCGA	1 cut(s)	91
BspACI	CCGC	6 cut(s)	25, 51, 122, 211, 276, 1796
BspANI	GGCC	6 cut(s)	9, 112, 519, 644, 717, 1822
BspCNI	CTCAG	6 cut(s)	850, 865, 998, 1459, 1813, 1846
BspEI	TCCGGA	3 cut(s)	42, 239, 694
BspFNI	CGCG	3 cut(s)	27, 91, 124
BspMAI	CTGCAG	2 cut(s)	948, 1545
BspPI	GGATC	2 cut(s)	432, 445
BspT107I	GGYRCC	4 cut(s)	118, 200, 656, 1675
BspTI	CTTAAG	2 cut(s)	344, 1046
BsrDI	GCAATG	2 cut(s)	1328, 2012
BsrGI	TGTACA	1 cut(s)	495
BsrI	ACTGG	5 cut(s)	645, 718, 967, 1322, 1668
BssECI	CCNNGG	3 cut(s)	785, 1034, 1594
BssMI	GATC	5 cut(s)	66, 437, 1068, 1528, 1621
BssNAI	GTATAC	1 cut(s)	1138
BssNI	GRCGYC	1 cut(s)	119
BssT1I	CCWWGG	1 cut(s)	785
Bst1107I	GTATAC	1 cut(s)	1138
Bst2UI	CCWGG	3 cut(s)	432, 1035, 1596
Bst4CI	ACNGT	6 cut(s)	510, 757, 798, 1135, 1551, 1711
Bst6I	CTCTTC	1 cut(s)	824
BstACI	GRCGYC	1 cut(s)	119
BstAFI	CTTAAG	2 cut(s)	344, 1046
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstAUI	TGTACA	1 cut(s)	495
BstC8I	GCNNGC	2 cut(s)	126, 1090
BstDEI	CTNAG	8 cut(s)	858, 873, 985, 1467, 1800, 1805, 1833, 1847
BstDSI	CCRYGG	1 cut(s)	785
BstF5I	GGATG	7 cut(s)	231, 573, 693, 755, 844, 1477, 1956
BstFNI	CGCG	3 cut(s)	27, 91, 124
BstH2I	RGCGCY	2 cut(s)	122, 1410
BstHHI	GCGC	5 cut(s)	121, 130, 160, 177, 1409
BstKTI	GATC	5 cut(s)	69, 440, 1071, 1531, 1624
BstMBI	GATC	5 cut(s)	66, 437, 1068, 1528, 1621
BstMWI	GCNNNNNNNGC	9 cut(s)	15, 24, 97, 118, 125, 127, 284, 395, 1801
BstNI	CCWGG	3 cut(s)	432, 1035, 1596
BstNSI	RCATGY	2 cut(s)	1201, 1300
BstPAI	GACNNNNGTC	1 cut(s)	1200
BstSCI	CCNGG	3 cut(s)	430, 1033, 1594
BstSFI	CTRYAG	2 cut(s)	944, 1541
BstSLI	GKGCMC	1 cut(s)	1678
BstUI	CGCG	3 cut(s)	27, 91, 124
BstV1I	GCAGC	9 cut(s)	147, 799, 916, 930, 958, 1416, 1527, 1595, 2014
BstV2I	GAAGAC	1 cut(s)	305
BstX2I	RGATCY	2 cut(s)	437, 1528
BstYI	RGATCY	2 cut(s)	437, 1528
BstZ17I	GTATAC	1 cut(s)	1138
BsuRI	GGCC	6 cut(s)	9, 112, 519, 644, 717, 1822
BtgI	CCRYGG	1 cut(s)	785
BtsCI	GGATG	7 cut(s)	231, 573, 693, 755, 844, 1477, 1956
BtsIMutI	CAGTG	2 cut(s)	960, 1467
BtuMI	TCGCGA	1 cut(s)	91
Cac8I	GCNNGC	2 cut(s)	126, 1090
CaiI	CAGNNNCTG	1 cut(s)	1466
CfoI	GCGC	5 cut(s)	121, 130, 160, 177, 1409
Cfr13I	GGNCC	9 cut(s)	22, 45, 142, 468, 517, 1038, 1454, 1589, 1820
CseI	GACGC	1 cut(s)	921
Csp6I	GTAC	4 cut(s)	376, 496, 753, 1572
CspCI	CAANNNNNGTGG	2 cut(s)	1865, 1900
CviAII	CATG	6 cut(s)	786, 1057, 1111, 1198, 1297, 1391
CviQI	GTAC	4 cut(s)	376, 496, 753, 1572
DdeI	CTNAG	8 cut(s)	858, 873, 985, 1467, 1800, 1805, 1833, 1847
DinI	GGCGCC	1 cut(s)	120
DpnI	GATC	5 cut(s)	68, 439, 1070, 1530, 1623
DpnII	GATC	5 cut(s)	66, 437, 1068, 1528, 1621
DraIII	CACNNNGTG	1 cut(s)	1850
DriI	GACNNNNNGTC	1 cut(s)	922
EaeI	YGGCCR	2 cut(s)	642, 715
Eam1104I	CTCTTC	1 cut(s)	824
Eam1105I	GACNNNNNGTC	1 cut(s)	922
EarI	CTCTTC	1 cut(s)	824
Ecl136II	GAGCTC	1 cut(s)	1164
Eco130I	CCWWGG	1 cut(s)	785
Eco147I	AGGCCT	2 cut(s)	9, 112
Eco24I	GRGCYC	1 cut(s)	1166
Eco47I	GGWCC	7 cut(s)	22, 45, 142, 468, 1038, 1454, 1589
Eco47III	AGCGCT	1 cut(s)	1408
Eco53kI	GAGCTC	1 cut(s)	1164
Eco57I	CTGAAG	3 cut(s)	904, 984, 1553
Eco88I	CYCGRG	1 cut(s)	476
EcoICRI	GAGCTC	1 cut(s)	1164
EcoO109I	RGGNCCY	2 cut(s)	468, 1820
EcoRI	GAATTC	2 cut(s)	1436, 1562
EcoRII	CCWGG	3 cut(s)	430, 1033, 1594
EcoT14I	CCWWGG	1 cut(s)	785
EcoT22I	ATGCAT	1 cut(s)	552
EcoT38I	GRGCYC	1 cut(s)	1166
EgeI	GGCGCC	1 cut(s)	120
EheI	GGCGCC	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	785
FaeI	CATG	6 cut(s)	789, 1060, 1114, 1201, 1300, 1394
FaqI	GGGAC	6 cut(s)	16, 128, 397, 569, 1051, 1575
FatI	CATG	6 cut(s)	785, 1056, 1110, 1197, 1296, 1390
FauI	CCCGC	1 cut(s)	204
FauNDI	CATATG	2 cut(s)	737, 1023
FblI	GTMKAC	3 cut(s)	60, 1137, 1990
FokI	GGATG	7 cut(s)	238, 560, 700, 762, 831, 1484, 1963
FriOI	GRGCYC	1 cut(s)	1166
FspBI	CTAG	5 cut(s)	108, 390, 902, 1511, 1680
GlaI	GCGC	5 cut(s)	120, 129, 159, 176, 1408
GsaI	CCCAGC	1 cut(s)	1174
GsuI	CTGGAG	4 cut(s)	58, 692, 1364, 1431
HaeII	RGCGCY	2 cut(s)	122, 1410
HaeIII	GGCC	6 cut(s)	9, 112, 519, 644, 717, 1822
HapII	CCGG	7 cut(s)	43, 116, 137, 240, 695, 774, 1978
HgaI	GACGC	1 cut(s)	921
HhaI	GCGC	5 cut(s)	121, 130, 160, 177, 1409
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	6 cut(s)	789, 1060, 1114, 1201, 1300, 1394
Hin6I	GCGC	5 cut(s)	119, 128, 158, 175, 1407
HinP1I	GCGC	5 cut(s)	119, 128, 158, 175, 1407
HincII	GTYRAC	3 cut(s)	61, 1080, 1991
HindII	GTYRAC	3 cut(s)	61, 1080, 1991
HpaII	CCGG	7 cut(s)	43, 116, 137, 240, 695, 774, 1978
HphI	GGTGA	2 cut(s)	1656, 1953
Hpy166II	GTNNAC	8 cut(s)	61, 498, 1080, 1138, 1304, 1721, 1811, 1991
Hpy188I	TCNGA	6 cut(s)	937, 1073, 1219, 1533, 1836, 1870
Hpy8I	GTNNAC	8 cut(s)	61, 498, 1080, 1138, 1304, 1721, 1811, 1991
Hpy99I	CGWCG	2 cut(s)	17, 62
HpyAV	CCTTC	6 cut(s)	214, 664, 901, 1068, 1090, 1516
HpyCH4III	ACNGT	6 cut(s)	510, 757, 798, 1135, 1551, 1711
HpyCH4IV	ACGT	1 cut(s)	1062
HpyF10VI	GCNNNNNNNGC	9 cut(s)	15, 24, 97, 118, 125, 127, 284, 395, 1801
HpyF3I	CTNAG	8 cut(s)	858, 873, 985, 1467, 1800, 1805, 1833, 1847
HpySE526I	ACGT	1 cut(s)	1062
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	6 cut(s)	789, 1060, 1114, 1201, 1300, 1394
HspAI	GCGC	5 cut(s)	119, 128, 158, 175, 1407
KasI	GGCGCC	1 cut(s)	118
Kpn2I	TCCGGA	3 cut(s)	42, 239, 694
Kzo9I	GATC	5 cut(s)	66, 437, 1068, 1528, 1621
LmnI	GCTCC	8 cut(s)	77, 697, 789, 1161, 1169, 1175, 1412, 1894
Lsp1109I	GCAGC	9 cut(s)	147, 799, 916, 930, 958, 1416, 1527, 1595, 2014
LweI	GCATC	6 cut(s)	145, 629, 871, 1274, 1424, 1819
MaeI	CTAG	5 cut(s)	108, 390, 902, 1511, 1680
MaeII	ACGT	1 cut(s)	1062
MaeIII	GTNAC	3 cut(s)	958, 1483, 1662
MalI	GATC	5 cut(s)	68, 439, 1070, 1530, 1623
MboI	GATC	5 cut(s)	66, 437, 1068, 1528, 1621
MboII	GAAGA	7 cut(s)	310, 637, 811, 1546, 1571, 1698, 1916
MfeI	CAATTG	1 cut(s)	1602
MflI	RGATCY	2 cut(s)	437, 1528
MhlI	GDGCHC	3 cut(s)	1130, 1166, 1678
MlsI	TGGCCA	2 cut(s)	644, 717
MluNI	TGGCCA	2 cut(s)	644, 717
Mly113I	GGCGCC	1 cut(s)	119
MlyI	GAGTC	3 cut(s)	38, 48, 488
MmeI	TCCRAC	4 cut(s)	303, 399, 727, 1684
Mox20I	TGGCCA	2 cut(s)	644, 717
Mph1103I	ATGCAT	1 cut(s)	552
MroI	TCCGGA	3 cut(s)	42, 239, 694
MroXI	GAANNNNTTC	2 cut(s)	702, 1436
MscI	TGGCCA	2 cut(s)	644, 717
MseI	TTAA	6 cut(s)	345, 600, 893, 1047, 1251, 1277
MslI	CAYNNNNRTG	3 cut(s)	537, 1299, 1490
Msp20I	TGGCCA	2 cut(s)	644, 717
MspA1I	CMGCKG	2 cut(s)	51, 1586
MspCI	CTTAAG	2 cut(s)	344, 1046
MspI	CCGG	7 cut(s)	43, 116, 137, 240, 695, 774, 1978
MspR9I	CCNGG	3 cut(s)	432, 1035, 1596
MunI	CAATTG	1 cut(s)	1602
Mva1269I	GAATGC	1 cut(s)	1585
MvaI	CCWGG	3 cut(s)	432, 1035, 1596
MvnI	CGCG	3 cut(s)	27, 91, 124
MwoI	GCNNNNNNNGC	9 cut(s)	15, 24, 97, 118, 125, 127, 284, 395, 1801
NarI	GGCGCC	1 cut(s)	119
NcoI	CCATGG	1 cut(s)	785
NdeI	CATATG	2 cut(s)	737, 1023
NdeII	GATC	5 cut(s)	66, 437, 1068, 1528, 1621
NlaIII	CATG	6 cut(s)	789, 1060, 1114, 1201, 1300, 1394
NmuCI	GTSAC	3 cut(s)	958, 1483, 1662
NruI	TCGCGA	1 cut(s)	91
NsiI	ATGCAT	1 cut(s)	552
NspI	RCATGY	2 cut(s)	1201, 1300
OliI	CACNNNNGTG	1 cut(s)	1299
PceI	AGGCCT	2 cut(s)	9, 112
PciI	ACATGT	2 cut(s)	1197, 1296
PctI	GAATGC	1 cut(s)	1585
PdmI	GAANNNNTTC	2 cut(s)	702, 1436
PfeI	GAWTC	9 cut(s)	93, 166, 229, 236, 349, 401, 1214, 1689, 1841
PleI	GAGTC	3 cut(s)	37, 48, 487
PluTI	GGCGCC	1 cut(s)	122
PpsI	GAGTC	3 cut(s)	37, 48, 487
PpuMI	RGGWCCY	1 cut(s)	468
PscI	ACATGT	2 cut(s)	1197, 1296
PshAI	GACNNNNGTC	1 cut(s)	1200
PsiI	TTATAA	1 cut(s)	488
Psp124BI	GAGCTC	1 cut(s)	1166
Psp1406I	AACGTT	1 cut(s)	1062
Psp5II	RGGWCCY	1 cut(s)	468
Psp6I	CCWGG	3 cut(s)	430, 1033, 1594
PspFI	CCCAGC	1 cut(s)	1170
PspGI	CCWGG	3 cut(s)	430, 1033, 1594
PspPI	GGNCC	9 cut(s)	22, 45, 142, 468, 517, 1038, 1454, 1589, 1820
PspPPI	RGGWCCY	1 cut(s)	468
PstI	CTGCAG	2 cut(s)	948, 1545
PstNI	CAGNNNCTG	1 cut(s)	1466
PsuI	RGATCY	2 cut(s)	437, 1528
PvuII	CAGCTG	1 cut(s)	1586
RruI	TCGCGA	1 cut(s)	91
RsaI	GTAC	4 cut(s)	377, 497, 754, 1573
RsaNI	GTAC	4 cut(s)	376, 496, 753, 1572
RseI	CAYNNNNRTG	3 cut(s)	537, 1299, 1490
SacI	GAGCTC	1 cut(s)	1166
SalI	GTCGAC	2 cut(s)	59, 1989
SaqAI	TTAA	6 cut(s)	345, 600, 893, 1047, 1251, 1277
Sau3AI	GATC	5 cut(s)	66, 437, 1068, 1528, 1621
Sau96I	GGNCC	9 cut(s)	22, 45, 142, 468, 517, 1038, 1454, 1589, 1820
ScaI	AGTACT	1 cut(s)	1573
SchI	GAGTC	3 cut(s)	38, 48, 488
ScrFI	CCNGG	3 cut(s)	432, 1035, 1596
SduI	GDGCHC	3 cut(s)	1130, 1166, 1678
SfaNI	GCATC	6 cut(s)	145, 629, 871, 1274, 1424, 1819
SfcI	CTRYAG	2 cut(s)	944, 1541
SfoI	GGCGCC	1 cut(s)	120
SinI	GGWCC	7 cut(s)	22, 45, 142, 468, 1038, 1454, 1589
SmiMI	CAYNNNNRTG	3 cut(s)	537, 1299, 1490
SmlI	CTYRAG	2 cut(s)	344, 1046
SmoI	CTYRAG	2 cut(s)	344, 1046
SseBI	AGGCCT	2 cut(s)	9, 112
SsiI	CCGC	6 cut(s)	25, 51, 122, 211, 276, 1796
SspDI	GGCGCC	1 cut(s)	118
SspI	AATATT	2 cut(s)	412, 1150
SspMI	CTAG	5 cut(s)	108, 390, 902, 1511, 1680
SstI	GAGCTC	1 cut(s)	1166
StuI	AGGCCT	2 cut(s)	9, 112
StyD4I	CCNGG	3 cut(s)	430, 1033, 1594
StyI	CCWWGG	1 cut(s)	785
TaaI	ACNGT	6 cut(s)	510, 757, 798, 1135, 1551, 1711
TaiI	ACGT	1 cut(s)	1065
TaqI	TCGA	7 cut(s)	60, 234, 269, 316, 623, 1067, 1990
TatI	WGTACW	3 cut(s)	495, 752, 1571
TauI	GCSGC	3 cut(s)	124, 278, 1798
TfiI	GAWTC	9 cut(s)	93, 166, 229, 236, 349, 401, 1214, 1689, 1841
Tru1I	TTAA	6 cut(s)	345, 600, 893, 1047, 1251, 1277
Tru9I	TTAA	6 cut(s)	345, 600, 893, 1047, 1251, 1277
TscAI	CASTG	2 cut(s)	967, 1467
TseFI	GTSAC	3 cut(s)	958, 1483, 1662
TseI	GCWGC	9 cut(s)	160, 812, 929, 943, 946, 1404, 1540, 1583, 2002
Tsp45I	GTSAC	3 cut(s)	958, 1483, 1662
TspGWI	ACGGA	2 cut(s)	669, 1828
TspRI	CASTG	2 cut(s)	967, 1467
Vha464I	CTTAAG	2 cut(s)	344, 1046
VpaK11BI	GGWCC	7 cut(s)	22, 45, 142, 468, 1038, 1454, 1589
XapI	RAATTY	5 cut(s)	461, 1247, 1436, 1562, 1788
XbaI	TCTAGA	1 cut(s)	901
XceI	RCATGY	2 cut(s)	1201, 1300
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1314
XmiI	GTMKAC	3 cut(s)	60, 1137, 1990
XmnI	GAANNNNTTC	2 cut(s)	702, 1436
XspI	CTAG	5 cut(s)	108, 390, 902, 1511, 1680
ZrmI	AGTACT	1 cut(s)	1573
Zsp2I	ATGCAT	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.