Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001310

Physical Location & Seq

Genomic Coordinates Forward (+)

46334863 .. 46335617

Gene Structure 755 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG290900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAAGGCTGAGATAGACTCGAAGGGGGAGGTGGACTTCTTTGTCTGCACTCTTGGGGAACATGTATCTATTAAGAGCAGTATGGTGACAATTTCAAAGGTTAAAACAAGAGAACATCAAACAAAATTCACACCCTCAGTAATCGAGCCTTCATTTGGTATTGGGCGGATTATATATTGTCTCTTTGAGCATTCCTTCTACACCAGACCAGATAAAACTGGGGATGAACAATTGAATGTGTTTCGCTTTAACCCACTTGTGGCGCCTTTTAAGTGCAAGGTTTTCCCTCTGGTTCGGAACCAACAATTTGAGGCTGTTGCTAAGGACATTTCCAAGTCATTGACTGCTGCTGGCATATCGCATAAAATGGATACTACAGGTACCTCGATTGGGAAACGTTACGCACGTACTGATGAGCTCGGTGTACCCTTTGCAATAACGGTTGATTCTACATCCTCGGTGACAATTCGTGAAAGAGACAGCAGAGATCAAATCCGTGTTAGTGTGAAGAAGGCAGCATCTGTTGTGAAGGAGCTCAGTGAGGGTTTGAGGACTTGGGAAGATGTGTGGTGGTCGCCTAGTCAACGGTGGAAGAGATTCTGGCGTTCCTGCTTCAGATTTATATTGTCTAGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

212

Amino Acids

24.28

Weight (kDa)

9.6

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HGTP_anticodon	PF03129	91 - 179	9.4e-20	Anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29880
fragaria_vesca	FvH4_4g22441 FvH4_4g22450 FvH4_4g22450 FvH4_4g22610 FvH4_4g22610
malus_domestica	MD13G1131000.v1.1 MD13G1145800.v1.1 MD16G1141200.v1.1
prunus_persica	Prupe.1G214600_v2.0.a1
pyrus_communis	pycom13g11430 pycom13g12530 pycom16g11160 pycom16g11170
rosa_chinensis	RchiOBHm_Chr1g0361881 RchiOBHm_Chr4g0428711 RchiOBHm_Chr4g0428851
rosa_laevigata	RLG00000007120 RLG00000007133 RLG00000027689 RLG00000027690 RLG00000027694
rosa_multiflora	Rmu_co8208336.1_g000001 Rmu_co8210234.1_g000001 Rmu_sc0003316.1_g000006 Rmu_sc0008612.1_g000003 Rmu_sc0018216.1_g000001 Rmu_ssc0000124.1_g000013
rosa_roxburghii	Rroxscaffold_4G00294630 Rroxscaffold_5G00370530
rosa_rugosa	Rorug01G0292100 Rorug04G0227400 Rorug04G0227500 Rorug04G0229700
rosa_samantha	Rh1AG302800 Rh1BG265900 Rh1BG266000 Rh1CG284000 Rh1DG295900 Rh1DG296000 Rh4AG284700 Rh4AG284900 Rh4AG286400 Rh4BG290700 Rh4BG290900 Rh4BG292200 Rh4CG308200 Rh4DG288200 Rh4DG289400
rosa_wichuraiana	Rw0G020620 Rw1G026830 Rw4G024720 Rw4G024830 Rw7G040280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
Acc65I	GGTACC	1 cut(s)	380
AccB1I	GGYRCC	2 cut(s)	262, 380
AciI	CCGC	1 cut(s)	166
AclI	AACGTT	1 cut(s)	397
AcsI	RAATTY	1 cut(s)	125
AcuI	CTGAAG	1 cut(s)	598
AcyI	GRCGYC	1 cut(s)	263
AfaI	GTAC	3 cut(s)	382, 409, 426
AfiI	CCNNNNNNNGG	3 cut(s)	155, 259, 390
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	2 cut(s)	96, 235
AluBI	AGCT	2 cut(s)	418, 535
AluI	AGCT	2 cut(s)	418, 535
Alw21I	GWGCWC	2 cut(s)	420, 537
Alw26I	GTCTC	2 cut(s)	185, 471
AlwNI	CAGNNNCTG	1 cut(s)	521
ApeKI	GCWGC	2 cut(s)	347, 515
ApoI	RAATTY	1 cut(s)	125
Asp700I	GAANNNNTTC	1 cut(s)	596
Asp718I	GGTACC	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	265
AsuHPI	GGTGA	2 cut(s)	97, 472
BanI	GGYRCC	2 cut(s)	262, 380
BanII	GRGCYC	2 cut(s)	420, 537
Bbv12I	GWGCWC	2 cut(s)	420, 537
BbvI	GCAGC	2 cut(s)	334, 527
BciVI	GTATCC	1 cut(s)	364
BcoDI	GTCTC	2 cut(s)	185, 471
BfaI	CTAG	2 cut(s)	579, 630
BfmI	CTRYAG	1 cut(s)	375
BfoI	RGCGCY	1 cut(s)	266
BfuI	GTATCC	1 cut(s)	364
BisI	GCNGC	2 cut(s)	348, 516
BlsI	GCNGC	2 cut(s)	349, 517
BmiI	GGNNCC	3 cut(s)	264, 299, 382
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	527
BmuI	ACTGGG	1 cut(s)	228
BplI	GAGNNNNNCTC	1 cut(s)	34
Bpu10I	CCTNAGC	1 cut(s)	321
BsaAI	YACGTR	1 cut(s)	407
BsaHI	GRCGYC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	456
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 259, 390
Bse1I	ACTGG	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	456
BseGI	GGATG	2 cut(s)	229, 452
BseLI	CCNNNNNNNGG	3 cut(s)	155, 259, 390
BseMII	CTCAG	2 cut(s)	150, 550
BseNI	ACTGG	1 cut(s)	223
BseXI	GCAGC	2 cut(s)	334, 527
BsgI	GTGCAG	1 cut(s)	31
BshNI	GGYRCC	2 cut(s)	262, 380
BsiHKAI	GWGCWC	2 cut(s)	420, 537
BslI	CCNNNNNNNGG	3 cut(s)	155, 259, 390
BsmAI	GTCTC	2 cut(s)	185, 471
BsmI	GAATGC	1 cut(s)	190
Bsp1286I	GDGCHC	2 cut(s)	420, 537
Bsp143I	GATC	1 cut(s)	487
BspACI	CCGC	1 cut(s)	166
BspCNI	CTCAG	2 cut(s)	149, 549
BspLI	GGNNCC	3 cut(s)	264, 299, 382
BspT107I	GGYRCC	2 cut(s)	262, 380
BsrI	ACTGG	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	456
BssMI	GATC	1 cut(s)	487
BssNI	GRCGYC	1 cut(s)	263
Bst4CI	ACNGT	2 cut(s)	442, 588
Bst6I	CTCTTC	1 cut(s)	587
BstACI	GRCGYC	1 cut(s)	263
BstBAI	YACGTR	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	4 cut(s)	9, 136, 321, 536
BstF5I	GGATG	2 cut(s)	229, 452
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	1 cut(s)	490
BstMAI	GTCTC	2 cut(s)	185, 471
BstMBI	GATC	1 cut(s)	487
BstNSI	RCATGY	1 cut(s)	65
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	2 cut(s)	334, 527
BsuI	GTATCC	1 cut(s)	364
BtsCI	GGATG	2 cut(s)	229, 452
BtsIMutI	CAGTG	1 cut(s)	544
Cac8I	GCNNGC	1 cut(s)	352
CaiI	CAGNNNCTG	1 cut(s)	521
CfoI	GCGC	1 cut(s)	265
Csp6I	GTAC	3 cut(s)	381, 408, 425
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	5 cut(s)	8, 148, 314, 418, 535
CviKI_1	RGCY	5 cut(s)	8, 148, 314, 418, 535
CviQI	GTAC	3 cut(s)	381, 408, 425
DdeI	CTNAG	4 cut(s)	9, 136, 321, 536
DinI	GGCGCC	1 cut(s)	264
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	587
EarI	CTCTTC	1 cut(s)	587
EciI	GGCGGA	1 cut(s)	181
Ecl136II	GAGCTC	2 cut(s)	418, 535
Eco24I	GRGCYC	2 cut(s)	420, 537
Eco53kI	GAGCTC	2 cut(s)	418, 535
Eco57I	CTGAAG	1 cut(s)	598
EcoICRI	GAGCTC	2 cut(s)	418, 535
EcoT38I	GRGCYC	2 cut(s)	420, 537
EgeI	GGCGCC	1 cut(s)	264
EheI	GGCGCC	1 cut(s)	264
FaeI	CATG	1 cut(s)	65
FaiI	YATR	7 cut(s)	63, 83, 173, 175, 356, 363, 623
FatI	CATG	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	348, 516
FokI	GGATG	2 cut(s)	236, 439
FriOI	GRGCYC	2 cut(s)	420, 537
Fsp4HI	GCNGC	2 cut(s)	348, 516
FspBI	CTAG	2 cut(s)	579, 630
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	2 cut(s)	348, 516
HaeII	RGCGCY	1 cut(s)	266
HhaI	GCGC	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	263
Hin1II	CATG	1 cut(s)	65
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HincII	GTYRAC	1 cut(s)	584
HindII	GTYRAC	1 cut(s)	584
HinfI	GANTC	3 cut(s)	17, 446, 597
HphI	GGTGA	2 cut(s)	97, 472
Hpy166II	GTNNAC	3 cut(s)	34, 425, 584
Hpy188I	TCNGA	2 cut(s)	297, 617
Hpy188III	TCNNGA	2 cut(s)	470, 630
Hpy8I	GTNNAC	3 cut(s)	34, 425, 584
HpyAV	CCTTC	5 cut(s)	16, 159, 205, 505, 523
HpyCH4III	ACNGT	2 cut(s)	442, 588
HpyCH4IV	ACGT	2 cut(s)	397, 406
HpyCH4V	TGCA	3 cut(s)	48, 276, 434
HpyF3I	CTNAG	4 cut(s)	9, 136, 321, 536
HpySE526I	ACGT	2 cut(s)	397, 406
Hsp92I	GRCGYC	1 cut(s)	263
Hsp92II	CATG	1 cut(s)	65
HspAI	GCGC	1 cut(s)	263
KasI	GGCGCC	1 cut(s)	262
KpnI	GGTACC	1 cut(s)	384
Kzo9I	GATC	1 cut(s)	487
LmnI	GCTCC	1 cut(s)	532
LpnPI	CCDG	8 cut(s)	204, 217, 222, 275, 336, 363, 586, 622
Lsp1109I	GCAGC	2 cut(s)	334, 527
LweI	GCATC	1 cut(s)	527
MaeI	CTAG	2 cut(s)	579, 630
MaeII	ACGT	2 cut(s)	397, 406
MaeIII	GTNAC	3 cut(s)	85, 398, 460
MalI	GATC	1 cut(s)	489
MboI	GATC	1 cut(s)	487
MboII	GAAGA	3 cut(s)	520, 572, 604
MfeI	CAATTG	1 cut(s)	230
MhlI	GDGCHC	2 cut(s)	420, 537
MluCI	AATT	5 cut(s)	90, 125, 230, 305, 465
Mly113I	GGCGCC	1 cut(s)	263
MlyI	GAGTC	1 cut(s)	11
MnlI	CCTC	8 cut(s)	22, 145, 297, 304, 394, 466, 535, 543
MroXI	GAANNNNTTC	1 cut(s)	596
MseI	TTAA	4 cut(s)	72, 102, 249, 270
MunI	CAATTG	1 cut(s)	230
Mva1269I	GAATGC	1 cut(s)	190
NarI	GGCGCC	1 cut(s)	263
NdeII	GATC	1 cut(s)	487
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	3 cut(s)	264, 299, 382
NmuCI	GTSAC	2 cut(s)	85, 460
NspI	RCATGY	1 cut(s)	65
PciI	ACATGT	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	1 cut(s)	403
PctI	GAATGC	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	596
PfeI	GAWTC	2 cut(s)	446, 597
PkrI	GCNGC	2 cut(s)	349, 517
PleI	GAGTC	1 cut(s)	11
PluTI	GGCGCC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	11
Ppu21I	YACGTR	1 cut(s)	407
PscI	ACATGT	1 cut(s)	61
Psp124BI	GAGCTC	2 cut(s)	420, 537
Psp1406I	AACGTT	1 cut(s)	397
PspN4I	GGNNCC	3 cut(s)	264, 299, 382
PstNI	CAGNNNCTG	1 cut(s)	521
RsaI	GTAC	3 cut(s)	382, 409, 426
RsaNI	GTAC	3 cut(s)	381, 408, 425
SacI	GAGCTC	2 cut(s)	420, 537
SaqAI	TTAA	4 cut(s)	72, 102, 249, 270
SatI	GCNGC	2 cut(s)	348, 516
Sau3AI	GATC	1 cut(s)	487
SchI	GAGTC	1 cut(s)	11
SduI	GDGCHC	2 cut(s)	420, 537
SetI	ASST	9 cut(s)	33, 102, 282, 382, 386, 400, 409, 420, 537
SfaNI	GCATC	1 cut(s)	527
SfcI	CTRYAG	1 cut(s)	375
SfoI	GGCGCC	1 cut(s)	264
Sse9I	AATT	5 cut(s)	90, 125, 230, 305, 465
SsiI	CCGC	1 cut(s)	166
SspDI	GGCGCC	1 cut(s)	262
SspMI	CTAG	2 cut(s)	579, 630
SstI	GAGCTC	2 cut(s)	420, 537
TaaI	ACNGT	2 cut(s)	442, 588
TaiI	ACGT	2 cut(s)	400, 409
TaqI	TCGA	3 cut(s)	20, 144, 386
TasI	AATT	5 cut(s)	90, 125, 230, 305, 465
TfiI	GAWTC	2 cut(s)	446, 597
Tru1I	TTAA	4 cut(s)	72, 102, 249, 270
Tru9I	TTAA	4 cut(s)	72, 102, 249, 270
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	2 cut(s)	85, 460
TseI	GCWGC	2 cut(s)	347, 515
Tsp45I	GTSAC	2 cut(s)	85, 460
TspDTI	ATGAA	3 cut(s)	17, 141, 240
TspGWI	ACGGA	1 cut(s)	485
TspRI	CASTG	1 cut(s)	544
XapI	RAATTY	1 cut(s)	125
XbaI	TCTAGA	1 cut(s)	629
XceI	RCATGY	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	596
XspI	CTAG	2 cut(s)	579, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.