Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8210234.1

Orthogroup ID

OG0001310

Physical Location & Seq

Genomic Coordinates Forward (+)

46 .. 725

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8210234.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 680 bp

atgagtaataataatacagaaagctcccgcagtgctctggccaacactcttgaacggcgcttcttttacatcccttctttcaagatctacggcgccgttgctggcctctacgactatggctcgcctggctgcaaactcaagaagaatgtcctttcgctttggcatcagcactttgttcatgaagagaacatgtgggagattgactgcccttgtctcacgccagaagctgtcttgaaggcatctggccatgtagataagttcactgacctcatggttaaggatgagaagaaagggacttgctaccgggctgatcacttgctcaaggatttctgcaataacaagcttgaagatcaggaccgtcgcattagtccagagatggcaatggagctgaaacaagtgctttctaaattggatggtctatcagctgaagagctgggtgcatgcatcaagaaatatgggattagagcccccgaaacagataattatctctcagatccttatcctttcaacttgatgtttcaaacatcaattggtccgtccggttcgagcactggtttctttcgcccagaaactgcacaaggcatatttgtgaattttatggacatttactatgacaatgggtgcaagctgccttttgccgttgctcaagttggccaggcttttcgaaacgagatatctcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

227

Amino Acids

25.66

Weight (kDa)

5.77

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29880
fragaria_vesca	FvH4_4g22441 FvH4_4g22450 FvH4_4g22450 FvH4_4g22610 FvH4_4g22610
malus_domestica	MD13G1131000.v1.1 MD13G1145800.v1.1 MD16G1141200.v1.1
prunus_persica	Prupe.1G214600_v2.0.a1
pyrus_communis	pycom13g11430 pycom13g12530 pycom16g11160 pycom16g11170
rosa_chinensis	RchiOBHm_Chr1g0361881 RchiOBHm_Chr4g0428711 RchiOBHm_Chr4g0428851
rosa_laevigata	RLG00000007120 RLG00000007133 RLG00000027689 RLG00000027690 RLG00000027694
rosa_multiflora	Rmu_co8208336.1_g000001 Rmu_co8210234.1_g000001 Rmu_sc0003316.1_g000006 Rmu_sc0008612.1_g000003 Rmu_sc0018216.1_g000001 Rmu_ssc0000124.1_g000013
rosa_roxburghii	Rroxscaffold_4G00294630 Rroxscaffold_5G00370530
rosa_rugosa	Rorug01G0292100 Rorug04G0227400 Rorug04G0227500 Rorug04G0229700
rosa_samantha	Rh1AG302800 Rh1BG265900 Rh1BG266000 Rh1CG284000 Rh1DG295900 Rh1DG296000 Rh4AG284700 Rh4AG284900 Rh4AG286400 Rh4BG290700 Rh4BG290900 Rh4BG292200 Rh4CG308200 Rh4DG288200 Rh4DG289400
rosa_wichuraiana	Rw0G020620 Rw1G026830 Rw4G024720 Rw4G024830 Rw7G040280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AciI	CCGC	1 cut(s)	28
AclWI	GGATC	1 cut(s)	488
AcoI	YGGCCR	3 cut(s)	39, 244, 652
AcsI	RAATTY	1 cut(s)	592
AcuI	CTGAAG	1 cut(s)	447
AcyI	GRCGYC	1 cut(s)	93
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	6 cut(s)	53, 82, 235, 347, 508, 521
AjnI	CCWGG	2 cut(s)	124, 654
AluBI	AGCT	7 cut(s)	24, 227, 343, 388, 425, 433, 628
AluI	AGCT	7 cut(s)	24, 227, 343, 388, 425, 433, 628
Alw21I	GWGCWC	2 cut(s)	37, 551
Alw26I	GTCTC	1 cut(s)	218
AlwI	GGATC	1 cut(s)	488
AlwNI	CAGNNNCTG	2 cut(s)	227, 572
AoxI	GGCC	4 cut(s)	39, 103, 244, 652
ApeKI	GCWGC	2 cut(s)	129, 628
ApoI	RAATTY	1 cut(s)	592
AspLEI	GCGC	2 cut(s)	60, 95
AspS9I	GGNCC	2 cut(s)	355, 533
AsuC2I	CCSGG	1 cut(s)	305
AsuII	TTCGAA	1 cut(s)	664
AvaII	GGWCC	2 cut(s)	355, 533
BalI	TGGCCA	3 cut(s)	41, 246, 654
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	469
Bbv12I	GWGCWC	2 cut(s)	37, 551
BbvI	GCAGC	2 cut(s)	116, 615
BccI	CCATC	2 cut(s)	370, 407
BceAI	ACGGC	4 cut(s)	71, 80, 106, 623
BciT130I	CCWGG	2 cut(s)	126, 656
BclI	TGATCA	1 cut(s)	310
BcnI	CCSGG	1 cut(s)	305
BcoDI	GTCTC	1 cut(s)	218
BfoI	RGCGCY	2 cut(s)	61, 96
BglII	AGATCT	1 cut(s)	84
BisI	GCNGC	2 cut(s)	130, 629
BlsI	GCNGC	2 cut(s)	131, 630
Bme1390I	CCNGG	3 cut(s)	126, 305, 656
Bme18I	GGWCC	2 cut(s)	355, 533
BmgT120I	GGNCC	2 cut(s)	355, 533
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	3 cut(s)	126, 305, 656
BmsI	GCATC	3 cut(s)	172, 248, 453
Bpu14I	TTCGAA	1 cut(s)	664
BpuEI	CTTGAG	3 cut(s)	122, 305, 630
BpuMI	CCSGG	1 cut(s)	305
BsaBI	GATNNNNATC	2 cut(s)	483, 498
BsaHI	GRCGYC	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	539
Bse1I	ACTGG	1 cut(s)	556
Bse3DI	GCAATG	1 cut(s)	387
Bse8I	GATNNNNATC	2 cut(s)	483, 498
BseBI	CCWGG	2 cut(s)	126, 656
BseGI	GGATG	3 cut(s)	69, 286, 418
BseJI	GATNNNNATC	2 cut(s)	483, 498
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	1 cut(s)	556
BseXI	GCAGC	2 cut(s)	116, 615
BseYI	CCCAGC	1 cut(s)	433
BsgI	GTGCAG	1 cut(s)	558
BshFI	GGCC	4 cut(s)	41, 105, 246, 654
BshNI	GGYRCC	1 cut(s)	92
BsiHKAI	GWGCWC	2 cut(s)	37, 551
BsiSI	CCGG	2 cut(s)	304, 540
BslFI	GGGAC	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	218
BsmFI	GGGAC	1 cut(s)	307
BsnI	GGCC	4 cut(s)	41, 105, 246, 654
Bsp119I	TTCGAA	1 cut(s)	664
Bsp1286I	GDGCHC	3 cut(s)	37, 469, 551
Bsp143I	GATC	4 cut(s)	84, 310, 349, 493
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	4 cut(s)	41, 105, 246, 654
BspCNI	CTCAG	1 cut(s)	503
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	94
BspPI	GGATC	1 cut(s)	488
BspQI	GCTCTTC	1 cut(s)	423
BspT104I	TTCGAA	1 cut(s)	664
BspT107I	GGYRCC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	387
BsrI	ACTGG	1 cut(s)	556
BssMI	GATC	4 cut(s)	84, 310, 349, 493
BssNI	GRCGYC	1 cut(s)	93
Bst2UI	CCWGG	2 cut(s)	126, 656
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	2 cut(s)	177, 423
BstACI	GRCGYC	1 cut(s)	93
BstBI	TTCGAA	1 cut(s)	664
BstC8I	GCNNGC	4 cut(s)	103, 122, 442, 626
BstDEI	CTNAG	1 cut(s)	490
BstF5I	GGATG	3 cut(s)	69, 286, 418
BstH2I	RGCGCY	2 cut(s)	61, 96
BstHHI	GCGC	2 cut(s)	60, 95
BstKTI	GATC	4 cut(s)	87, 313, 352, 496
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	4 cut(s)	84, 310, 349, 493
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	2 cut(s)	126, 656
BstNSI	RCATGY	2 cut(s)	193, 444
BstSCI	CCNGG	3 cut(s)	124, 303, 654
BstV1I	GCAGC	2 cut(s)	116, 615
BstX2I	RGATCY	2 cut(s)	84, 493
BstYI	RGATCY	2 cut(s)	84, 493
BsuRI	GGCC	4 cut(s)	41, 105, 246, 654
BtsCI	GGATG	3 cut(s)	69, 286, 418
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	3 cut(s)	37, 261, 549
Cac8I	GCNNGC	4 cut(s)	103, 122, 442, 626
CaiI	CAGNNNCTG	2 cut(s)	227, 572
CciI	TCATGA	1 cut(s)	178
CfoI	GCGC	2 cut(s)	60, 95
Cfr13I	GGNCC	2 cut(s)	355, 533
CviAII	CATG	5 cut(s)	179, 190, 248, 271, 441
DdeI	CTNAG	1 cut(s)	490
DinI	GGCGCC	1 cut(s)	94
DpnI	GATC	4 cut(s)	86, 312, 351, 495
DpnII	GATC	4 cut(s)	84, 310, 349, 493
EaeI	YGGCCR	3 cut(s)	39, 244, 652
Eam1104I	CTCTTC	2 cut(s)	177, 423
EarI	CTCTTC	2 cut(s)	177, 423
Eco24I	GRGCYC	1 cut(s)	469
Eco32I	GATATC	1 cut(s)	675
Eco47I	GGWCC	2 cut(s)	355, 533
Eco57I	CTGAAG	1 cut(s)	447
EcoRII	CCWGG	2 cut(s)	124, 654
EcoRV	GATATC	1 cut(s)	675
EcoT22I	ATGCAT	1 cut(s)	446
EcoT38I	GRGCYC	1 cut(s)	469
EgeI	GGCGCC	1 cut(s)	94
EheI	GGCGCC	1 cut(s)	94
FaeI	CATG	5 cut(s)	182, 193, 251, 274, 444
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	5 cut(s)	178, 189, 247, 270, 440
FauI	CCCGC	1 cut(s)	35
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	2 cut(s)	130, 629
FokI	GGATG	3 cut(s)	56, 293, 425
FriOI	GRGCYC	1 cut(s)	469
Fsp4HI	GCNGC	2 cut(s)	130, 629
GlaI	GCGC	2 cut(s)	59, 94
GluI	GCNGC	2 cut(s)	130, 629
GsaI	CCCAGC	1 cut(s)	437
HaeII	RGCGCY	2 cut(s)	61, 96
HaeIII	GGCC	4 cut(s)	41, 105, 246, 654
HapII	CCGG	2 cut(s)	304, 540
HhaI	GCGC	2 cut(s)	60, 95
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	5 cut(s)	182, 193, 251, 274, 444
Hin6I	GCGC	2 cut(s)	58, 93
HinP1I	GCGC	2 cut(s)	58, 93
HindIII	AAGCTT	1 cut(s)	341
HpaII	CCGG	2 cut(s)	304, 540
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	1 cut(s)	493
Hpy188III	TCNNGA	8 cut(s)	50, 82, 139, 179, 232, 353, 371, 448
Hpy8I	GTNNAC	1 cut(s)	261
Hpy99I	CGWCG	1 cut(s)	363
HpyAV	CCTTC	2 cut(s)	84, 229
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4V	TGCA	6 cut(s)	132, 333, 440, 444, 575, 624
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	490
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	5 cut(s)	182, 193, 251, 274, 444
HspAI	GCGC	2 cut(s)	58, 93
KasI	GGCGCC	1 cut(s)	92
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	4 cut(s)	84, 310, 349, 493
LguI	GCTCTTC	1 cut(s)	423
LmnI	GCTCC	2 cut(s)	29, 385
Lsp1109I	GCAGC	2 cut(s)	116, 615
LweI	GCATC	3 cut(s)	172, 248, 453
MalI	GATC	4 cut(s)	86, 312, 351, 495
MboI	GATC	4 cut(s)	84, 310, 349, 493
MboII	GAAGA	5 cut(s)	154, 194, 298, 359, 440
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	2 cut(s)	84, 493
MhlI	GDGCHC	3 cut(s)	37, 469, 551
MlsI	TGGCCA	3 cut(s)	41, 246, 654
MluCI	AATT	4 cut(s)	407, 481, 528, 592
MluNI	TGGCCA	3 cut(s)	41, 246, 654
Mly113I	GGCGCC	1 cut(s)	93
MnlI	CCTC	2 cut(s)	116, 278
Mox20I	TGGCCA	3 cut(s)	41, 246, 654
Mph1103I	ATGCAT	1 cut(s)	446
MscI	TGGCCA	3 cut(s)	41, 246, 654
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	587
Msp20I	TGGCCA	3 cut(s)	41, 246, 654
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	2 cut(s)	304, 540
MspR9I	CCNGG	3 cut(s)	126, 305, 656
MunI	CAATTG	1 cut(s)	528
MvaI	CCWGG	2 cut(s)	126, 656
MwoI	GCNNNNNNNGC	1 cut(s)	126
NarI	GGCGCC	1 cut(s)	93
NciI	CCSGG	1 cut(s)	305
NdeII	GATC	4 cut(s)	84, 310, 349, 493
NlaIII	CATG	5 cut(s)	182, 193, 251, 274, 444
NlaIV	GGNNCC	1 cut(s)	94
NsiI	ATGCAT	1 cut(s)	446
NspI	RCATGY	2 cut(s)	193, 444
NspV	TTCGAA	1 cut(s)	664
PaeI	GCATGC	1 cut(s)	444
PagI	TCATGA	1 cut(s)	178
PciI	ACATGT	1 cut(s)	189
PciSI	GCTCTTC	1 cut(s)	423
PkrI	GCNGC	2 cut(s)	131, 630
PluTI	GGCGCC	1 cut(s)	96
PscI	ACATGT	1 cut(s)	189
Psp6I	CCWGG	2 cut(s)	124, 654
PspFI	CCCAGC	1 cut(s)	433
PspGI	CCWGG	2 cut(s)	124, 654
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	2 cut(s)	355, 533
PstNI	CAGNNNCTG	2 cut(s)	227, 572
PsuI	RGATCY	2 cut(s)	84, 493
PvuII	CAGCTG	1 cut(s)	425
RseI	CAYNNNNRTG	1 cut(s)	587
SapI	GCTCTTC	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	2 cut(s)	130, 629
Sau3AI	GATC	4 cut(s)	84, 310, 349, 493
Sau96I	GGNCC	2 cut(s)	355, 533
ScrFI	CCNGG	3 cut(s)	126, 305, 656
SduI	GDGCHC	3 cut(s)	37, 469, 551
SetI	ASST	8 cut(s)	26, 229, 270, 345, 390, 427, 435, 630
SfaNI	GCATC	3 cut(s)	172, 248, 453
SfoI	GGCGCC	1 cut(s)	94
SfuI	TTCGAA	1 cut(s)	664
SinI	GGWCC	2 cut(s)	355, 533
SmiMI	CAYNNNNRTG	1 cut(s)	587
SmlI	CTYRAG	3 cut(s)	137, 320, 645
SmoI	CTYRAG	3 cut(s)	137, 320, 645
SphI	GCATGC	1 cut(s)	444
Sse9I	AATT	4 cut(s)	407, 481, 528, 592
SsiI	CCGC	1 cut(s)	28
SspDI	GGCGCC	1 cut(s)	92
StyD4I	CCNGG	3 cut(s)	124, 303, 654
TaaI	ACNGT	1 cut(s)	359
TaqI	TCGA	2 cut(s)	545, 664
TasI	AATT	4 cut(s)	407, 481, 528, 592
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	3 cut(s)	37, 268, 556
TseI	GCWGC	2 cut(s)	129, 628
TspDTI	ATGAA	2 cut(s)	167, 195
TspGWI	ACGGA	1 cut(s)	525
TspRI	CASTG	3 cut(s)	37, 268, 556
VpaK11BI	GGWCC	2 cut(s)	355, 533
XapI	RAATTY	1 cut(s)	592
XceI	RCATGY	2 cut(s)	193, 444
Zsp2I	ATGCAT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.