Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001310

Physical Location & Seq

Genomic Coordinates Forward (+)

13984685 .. 13985321

Gene Structure 637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027690

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAAGGCCGAGTTGGACTCCAAGGGGGAGGTGGACTTCTTTGTCTGCACTCTTGGGGAACATGTATCTATTAAGAGCAGATTATATAGTCTCTTTGAGCATTCCTTCTACACCAGACCAGATAAAACTGGGGATGAACAATTGAATGTGTTTCGGTTTAACCCACTTGTGGCGCCTTTTAAGTGCACAGTTTTCCCTCTGATTCGGAACCAACGGTTTGAGGATGTTGCTAAGGACATTTCCAAGTCATTGACTGCTGCTGGCATATCGCATAAAATAGATACTACAGGTACCTCGATTGGGAAACGTTACGCACGTACTGATGAGCTCGGTGTACCCTTTGCAATCACGGTTGATTCTACATCCTCGGTCACAATTCGAGAAAGAGACAGCAAAGATCAAATCCGTGTTAGTGTGAAGAAGGCAGTATCTGTTGTGAAGGAGCTCAGTGAGGGGTTGAGGACTTGGGAAGATGTGTGGTGGTCACCTAGTCAACGGTGGAAGAGATTCTGGCGTTCCTGCTTCAGATTTGTATTGTCTAGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

183

Amino Acids

20.99

Weight (kDa)

9.45

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HGTP_anticodon	PF03129	61 - 149	1.3e-20	Anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29880
fragaria_vesca	FvH4_4g22441 FvH4_4g22450 FvH4_4g22450 FvH4_4g22610 FvH4_4g22610
malus_domestica	MD13G1131000.v1.1 MD13G1145800.v1.1 MD16G1141200.v1.1
prunus_persica	Prupe.1G214600_v2.0.a1
pyrus_communis	pycom13g11430 pycom13g12530 pycom16g11160 pycom16g11170
rosa_chinensis	RchiOBHm_Chr1g0361881 RchiOBHm_Chr4g0428711 RchiOBHm_Chr4g0428851
rosa_laevigata	RLG00000007120 RLG00000007133 RLG00000027689 RLG00000027690 RLG00000027694
rosa_multiflora	Rmu_co8208336.1_g000001 Rmu_co8210234.1_g000001 Rmu_sc0003316.1_g000006 Rmu_sc0008612.1_g000003 Rmu_sc0018216.1_g000001 Rmu_ssc0000124.1_g000013
rosa_roxburghii	Rroxscaffold_4G00294630 Rroxscaffold_5G00370530
rosa_rugosa	Rorug01G0292100 Rorug04G0227400 Rorug04G0227500 Rorug04G0229700
rosa_samantha	Rh1AG302800 Rh1BG265900 Rh1BG266000 Rh1CG284000 Rh1DG295900 Rh1DG296000 Rh4AG284700 Rh4AG284900 Rh4AG286400 Rh4BG290700 Rh4BG290900 Rh4BG292200 Rh4CG308200 Rh4DG288200 Rh4DG289400
rosa_wichuraiana	Rw0G020620 Rw1G026830 Rw4G024720 Rw4G024830 Rw7G040280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
Acc65I	GGTACC	1 cut(s)	290
AccB1I	GGYRCC	2 cut(s)	172, 290
AclI	AACGTT	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	508
AcyI	GRCGYC	1 cut(s)	173
AfaI	GTAC	3 cut(s)	292, 319, 336
AfiI	CCNNNNNNNGG	2 cut(s)	169, 300
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	1 cut(s)	145
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	2 cut(s)	328, 445
AluI	AGCT	2 cut(s)	328, 445
Alw21I	GWGCWC	3 cut(s)	188, 330, 447
Alw26I	GTCTC	2 cut(s)	95, 381
Alw44I	GTGCAC	1 cut(s)	184
AlwNI	CAGNNNCTG	1 cut(s)	431
AoxI	GGCC	1 cut(s)	6
ApaLI	GTGCAC	1 cut(s)	184
ApeKI	GCWGC	1 cut(s)	257
Asp700I	GAANNNNTTC	1 cut(s)	506
Asp718I	GGTACC	1 cut(s)	290
AspLEI	GCGC	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	477
BaeGI	GKGCMC	1 cut(s)	188
BanI	GGYRCC	2 cut(s)	172, 290
BanII	GRGCYC	2 cut(s)	330, 447
Bbv12I	GWGCWC	3 cut(s)	188, 330, 447
BbvI	GCAGC	1 cut(s)	244
BcoDI	GTCTC	2 cut(s)	95, 381
BfaI	CTAG	2 cut(s)	489, 540
BfmI	CTRYAG	1 cut(s)	285
BfoI	RGCGCY	1 cut(s)	176
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
BmiI	GGNNCC	3 cut(s)	174, 209, 292
BmrI	ACTGGG	1 cut(s)	138
BmuI	ACTGGG	1 cut(s)	138
BplI	GAGNNNNNCTC	1 cut(s)	34
Bpu10I	CCTNAGC	1 cut(s)	231
BsaAI	YACGTR	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	173
BsaJI	CCNNGG	2 cut(s)	21, 366
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 300
Bse1I	ACTGG	1 cut(s)	133
BseDI	CCNNGG	2 cut(s)	21, 366
BseGI	GGATG	3 cut(s)	139, 229, 362
BseLI	CCNNNNNNNGG	2 cut(s)	169, 300
BseMII	CTCAG	1 cut(s)	460
BseNI	ACTGG	1 cut(s)	133
BseSI	GKGCMC	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	244
BsgI	GTGCAG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	8
BshNI	GGYRCC	2 cut(s)	172, 290
BsiHKAI	GWGCWC	3 cut(s)	188, 330, 447
BslI	CCNNNNNNNGG	2 cut(s)	169, 300
BsmAI	GTCTC	2 cut(s)	95, 381
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	8
Bsp1286I	GDGCHC	3 cut(s)	188, 330, 447
Bsp143I	GATC	1 cut(s)	397
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	459
BspLI	GGNNCC	3 cut(s)	174, 209, 292
BspT107I	GGYRCC	2 cut(s)	172, 290
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	2 cut(s)	21, 366
BssMI	GATC	1 cut(s)	397
BssNI	GRCGYC	1 cut(s)	173
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	4 cut(s)	190, 216, 352, 498
Bst6I	CTCTTC	1 cut(s)	497
BstACI	GRCGYC	1 cut(s)	173
BstBAI	YACGTR	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	2 cut(s)	231, 446
BstEII	GGTNACC	1 cut(s)	483
BstF5I	GGATG	3 cut(s)	139, 229, 362
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	1 cut(s)	400
BstMAI	GTCTC	2 cut(s)	95, 381
BstMBI	GATC	1 cut(s)	397
BstNSI	RCATGY	1 cut(s)	65
BstPI	GGTNACC	1 cut(s)	483
BstSFI	CTRYAG	1 cut(s)	285
BstSLI	GKGCMC	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	8
BtsCI	GGATG	3 cut(s)	139, 229, 362
BtsIMutI	CAGTG	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	262
CaiI	CAGNNNCTG	1 cut(s)	431
CfoI	GCGC	1 cut(s)	175
Csp6I	GTAC	3 cut(s)	291, 318, 335
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	3 cut(s)	8, 328, 445
CviKI_1	RGCY	3 cut(s)	8, 328, 445
CviQI	GTAC	3 cut(s)	291, 318, 335
DdeI	CTNAG	2 cut(s)	231, 446
DinI	GGCGCC	1 cut(s)	174
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Ecl136II	GAGCTC	2 cut(s)	328, 445
Eco130I	CCWWGG	1 cut(s)	21
Eco24I	GRGCYC	2 cut(s)	330, 447
Eco53kI	GAGCTC	2 cut(s)	328, 445
Eco57I	CTGAAG	1 cut(s)	508
Eco91I	GGTNACC	1 cut(s)	483
EcoICRI	GAGCTC	2 cut(s)	328, 445
EcoO65I	GGTNACC	1 cut(s)	483
EcoT14I	CCWWGG	1 cut(s)	21
EcoT38I	GRGCYC	2 cut(s)	330, 447
EgeI	GGCGCC	1 cut(s)	174
EheI	GGCGCC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	1 cut(s)	65
FaiI	YATR	5 cut(s)	63, 85, 87, 266, 273
FatI	CATG	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	3 cut(s)	146, 236, 349
FriOI	GRGCYC	2 cut(s)	330, 447
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	2 cut(s)	489, 540
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	8
HhaI	GCGC	1 cut(s)	175
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	1 cut(s)	65
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HincII	GTYRAC	1 cut(s)	494
HindII	GTYRAC	1 cut(s)	494
HinfI	GANTC	4 cut(s)	17, 202, 356, 507
HphI	GGTGA	1 cut(s)	477
Hpy166II	GTNNAC	4 cut(s)	34, 186, 335, 494
Hpy188I	TCNGA	3 cut(s)	201, 207, 527
Hpy188III	TCNNGA	2 cut(s)	380, 540
Hpy8I	GTNNAC	4 cut(s)	34, 186, 335, 494
HpyAV	CCTTC	3 cut(s)	115, 415, 433
HpyCH4III	ACNGT	4 cut(s)	190, 216, 352, 498
HpyCH4IV	ACGT	2 cut(s)	307, 316
HpyCH4V	TGCA	3 cut(s)	48, 186, 344
HpyF3I	CTNAG	2 cut(s)	231, 446
HpySE526I	ACGT	2 cut(s)	307, 316
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	1 cut(s)	65
HspAI	GCGC	1 cut(s)	173
KasI	GGCGCC	1 cut(s)	172
KpnI	GGTACC	1 cut(s)	294
Kzo9I	GATC	1 cut(s)	397
LmnI	GCTCC	1 cut(s)	442
LpnPI	CCDG	7 cut(s)	114, 127, 132, 246, 273, 496, 532
Lsp1109I	GCAGC	1 cut(s)	244
MaeI	CTAG	2 cut(s)	489, 540
MaeII	ACGT	2 cut(s)	307, 316
MaeIII	GTNAC	3 cut(s)	308, 370, 483
MalI	GATC	1 cut(s)	399
MboI	GATC	1 cut(s)	397
MboII	GAAGA	3 cut(s)	430, 482, 514
MfeI	CAATTG	1 cut(s)	140
MhlI	GDGCHC	3 cut(s)	188, 330, 447
MluCI	AATT	2 cut(s)	140, 375
Mly113I	GGCGCC	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	11
MnlI	CCTC	7 cut(s)	22, 207, 214, 304, 376, 445, 453
MroXI	GAANNNNTTC	1 cut(s)	506
MseI	TTAA	3 cut(s)	72, 159, 180
MunI	CAATTG	1 cut(s)	140
Mva1269I	GAATGC	1 cut(s)	100
NarI	GGCGCC	1 cut(s)	173
NdeII	GATC	1 cut(s)	397
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	3 cut(s)	174, 209, 292
NmeAIII	GCCGAG	1 cut(s)	34
NmuCI	GTSAC	2 cut(s)	370, 483
NspI	RCATGY	1 cut(s)	65
PciI	ACATGT	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	1 cut(s)	313
PctI	GAATGC	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	506
PfeI	GAWTC	3 cut(s)	202, 356, 507
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	1 cut(s)	11
PluTI	GGCGCC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	11
Ppu21I	YACGTR	1 cut(s)	317
PscI	ACATGT	1 cut(s)	61
Psp124BI	GAGCTC	2 cut(s)	330, 447
Psp1406I	AACGTT	1 cut(s)	307
PspEI	GGTNACC	1 cut(s)	483
PspN4I	GGNNCC	3 cut(s)	174, 209, 292
PstNI	CAGNNNCTG	1 cut(s)	431
RsaI	GTAC	3 cut(s)	292, 319, 336
RsaNI	GTAC	3 cut(s)	291, 318, 335
SacI	GAGCTC	2 cut(s)	330, 447
SaqAI	TTAA	3 cut(s)	72, 159, 180
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	1 cut(s)	397
SchI	GAGTC	1 cut(s)	11
SduI	GDGCHC	3 cut(s)	188, 330, 447
SetI	ASST	8 cut(s)	33, 292, 296, 310, 319, 330, 447, 490
SfcI	CTRYAG	1 cut(s)	285
SfoI	GGCGCC	1 cut(s)	174
Sse9I	AATT	2 cut(s)	140, 375
SspDI	GGCGCC	1 cut(s)	172
SspMI	CTAG	2 cut(s)	489, 540
SstI	GAGCTC	2 cut(s)	330, 447
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	4 cut(s)	190, 216, 352, 498
TaiI	ACGT	2 cut(s)	310, 319
TaqI	TCGA	2 cut(s)	296, 379
TaqII	GACCGA	1 cut(s)	358
TasI	AATT	2 cut(s)	140, 375
TfiI	GAWTC	3 cut(s)	202, 356, 507
Tru1I	TTAA	3 cut(s)	72, 159, 180
Tru9I	TTAA	3 cut(s)	72, 159, 180
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	2 cut(s)	370, 483
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	2 cut(s)	370, 483
TspDTI	ATGAA	2 cut(s)	17, 150
TspGWI	ACGGA	1 cut(s)	395
TspRI	CASTG	1 cut(s)	454
VneI	GTGCAC	1 cut(s)	184
XbaI	TCTAGA	1 cut(s)	539
XceI	RCATGY	1 cut(s)	65
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	506
XspI	CTAG	2 cut(s)	489, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.