Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8208336.1

Orthogroup ID

OG0001310

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 629

Gene Structure 628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8208336.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 628 bp

atggctcactatgctgctgactgctgggatgctgagattgagacttcctatggctggattgagtgcgtcggtattgcagatagatctgcatatgacttgaaagctcattcggggaaaagtcgtcttgaggcacatgaacaactttcagaaccaagagaagtggagaaattggttatatctcctgtaaagaaagagattggccctgctttcgagaagaagcaaaagaatgtgcttgaagctttggaggctatggatgaagaagaaatttcaaaaatgaaggccgagttagactccaagggggaggtggacttctttgtctgcactcttggggaacatgtatctattaagagcagtatggtgacaatttcaaaggttaaaacaagagaacatcaaagaaaattcacaccctcagtaatcgagccttcatttggtattgggaggattatatattgtctctttgagcattccttctacaccagaccagataaaacaggggatgaacaattgaatgtgtttcgctttaacccacttgtggcgccttttaagtgcacagttttccctctgattcggaaccaacggtttgaggatgttgccaaggacatttccaagtcattgactgctgctggca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

209

Amino Acids

23.68

Weight (kDa)

5.76

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29880
fragaria_vesca	FvH4_4g22441 FvH4_4g22450 FvH4_4g22450 FvH4_4g22610 FvH4_4g22610
malus_domestica	MD13G1131000.v1.1 MD13G1145800.v1.1 MD16G1141200.v1.1
prunus_persica	Prupe.1G214600_v2.0.a1
pyrus_communis	pycom13g11430 pycom13g12530 pycom16g11160 pycom16g11170
rosa_chinensis	RchiOBHm_Chr1g0361881 RchiOBHm_Chr4g0428711 RchiOBHm_Chr4g0428851
rosa_laevigata	RLG00000007120 RLG00000007133 RLG00000027689 RLG00000027690 RLG00000027694
rosa_multiflora	Rmu_co8208336.1_g000001 Rmu_co8210234.1_g000001 Rmu_sc0003316.1_g000006 Rmu_sc0008612.1_g000003 Rmu_sc0018216.1_g000001 Rmu_ssc0000124.1_g000013
rosa_roxburghii	Rroxscaffold_4G00294630 Rroxscaffold_5G00370530
rosa_rugosa	Rorug01G0292100 Rorug04G0227400 Rorug04G0227500 Rorug04G0229700
rosa_samantha	Rh1AG302800 Rh1BG265900 Rh1BG266000 Rh1CG284000 Rh1DG295900 Rh1DG296000 Rh4AG284700 Rh4AG284900 Rh4AG286400 Rh4BG290700 Rh4BG290900 Rh4BG292200 Rh4CG308200 Rh4DG288200 Rh4DG289400
rosa_wichuraiana	Rw0G020620 Rw1G026830 Rw4G024720 Rw4G024830 Rw7G040280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	314
AccB1I	GGYRCC	1 cut(s)	535
AcsI	RAATTY	2 cut(s)	264, 398
AcyI	GRCGYC	1 cut(s)	536
AfiI	CCNNNNNNNGG	3 cut(s)	54, 428, 532
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	5 cut(s)	100, 236, 270, 369, 508
AluBI	AGCT	2 cut(s)	104, 239
AluI	AGCT	2 cut(s)	104, 239
Alw21I	GWGCWC	1 cut(s)	551
Alw26I	GTCTC	2 cut(s)	35, 458
Alw44I	GTGCAC	1 cut(s)	547
AoxI	GGCC	2 cut(s)	199, 279
ApaLI	GTGCAC	1 cut(s)	547
ApeKI	GCWGC	2 cut(s)	14, 620
ApoI	RAATTY	2 cut(s)	264, 398
AspLEI	GCGC	1 cut(s)	538
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	551
BanI	GGYRCC	1 cut(s)	535
Bbv12I	GWGCWC	1 cut(s)	551
BbvI	GCAGC	1 cut(s)	607
BcoDI	GTCTC	2 cut(s)	35, 458
BfoI	RGCGCY	1 cut(s)	539
BglII	AGATCT	1 cut(s)	83
BisI	GCNGC	2 cut(s)	15, 621
BlsI	GCNGC	2 cut(s)	16, 622
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	2 cut(s)	537, 572
BmsI	GCATC	1 cut(s)	19
BplI	GAGNNNNNCTC	2 cut(s)	275, 307
BpuEI	CTTGAG	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	294, 594
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 428, 532
BseDI	CCNNGG	2 cut(s)	294, 594
BseGI	GGATG	4 cut(s)	34, 259, 502, 592
BseLI	CCNNNNNNNGG	3 cut(s)	54, 428, 532
BseMII	CTCAG	2 cut(s)	24, 423
BseSI	GKGCMC	1 cut(s)	551
BseXI	GCAGC	1 cut(s)	607
BseYI	CCCAGC	1 cut(s)	24
BsgI	GTGCAG	1 cut(s)	304
BshFI	GGCC	2 cut(s)	201, 281
BshNI	GGYRCC	1 cut(s)	535
BsiHKAI	GWGCWC	1 cut(s)	551
BslI	CCNNNNNNNGG	3 cut(s)	54, 428, 532
BsmAI	GTCTC	2 cut(s)	35, 458
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	2 cut(s)	201, 281
Bsp1286I	GDGCHC	1 cut(s)	551
Bsp143I	GATC	1 cut(s)	83
BspANI	GGCC	2 cut(s)	201, 281
BspCNI	CTCAG	2 cut(s)	25, 422
BspLI	GGNNCC	2 cut(s)	537, 572
BspT107I	GGYRCC	1 cut(s)	535
BssECI	CCNNGG	2 cut(s)	294, 594
BssMI	GATC	1 cut(s)	83
BssNI	GRCGYC	1 cut(s)	536
BssT1I	CCWWGG	2 cut(s)	294, 594
Bst4CI	ACNGT	2 cut(s)	553, 579
BstACI	GRCGYC	1 cut(s)	536
BstC8I	GCNNGC	1 cut(s)	625
BstDEI	CTNAG	2 cut(s)	33, 409
BstF5I	GGATG	4 cut(s)	34, 259, 502, 592
BstH2I	RGCGCY	1 cut(s)	539
BstHHI	GCGC	1 cut(s)	538
BstKTI	GATC	1 cut(s)	86
BstMAI	GTCTC	2 cut(s)	35, 458
BstMBI	GATC	1 cut(s)	83
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 245
BstNSI	RCATGY	1 cut(s)	338
BstSLI	GKGCMC	1 cut(s)	551
BstV1I	GCAGC	1 cut(s)	607
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
BsuRI	GGCC	2 cut(s)	201, 281
BtsCI	GGATG	4 cut(s)	34, 259, 502, 592
Cac8I	GCNNGC	1 cut(s)	625
CfoI	GCGC	1 cut(s)	538
Cfr13I	GGNCC	1 cut(s)	200
CseI	GACGC	1 cut(s)	55
CspCI	CAANNNNNGTGG	2 cut(s)	141, 176
CviAII	CATG	2 cut(s)	134, 335
CviJI	RGCY	8 cut(s)	5, 54, 104, 201, 239, 248, 281, 421
CviKI_1	RGCY	8 cut(s)	5, 54, 104, 201, 239, 248, 281, 421
DdeI	CTNAG	2 cut(s)	33, 409
DinI	GGCGCC	1 cut(s)	537
DpnI	GATC	1 cut(s)	85
DpnII	GATC	1 cut(s)	83
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
Eco130I	CCWWGG	2 cut(s)	294, 594
EcoT14I	CCWWGG	2 cut(s)	294, 594
EgeI	GGCGCC	1 cut(s)	537
EheI	GGCGCC	1 cut(s)	537
ErhI	CCWWGG	2 cut(s)	294, 594
FaeI	CATG	2 cut(s)	137, 338
FatI	CATG	2 cut(s)	133, 334
FauNDI	CATATG	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	15, 621
FokI	GGATG	4 cut(s)	41, 266, 509, 599
Fsp4HI	GCNGC	2 cut(s)	15, 621
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	2 cut(s)	15, 621
GsaI	CCCAGC	1 cut(s)	28
HaeII	RGCGCY	1 cut(s)	539
HaeIII	GGCC	2 cut(s)	201, 281
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	1 cut(s)	538
Hin1I	GRCGYC	1 cut(s)	536
Hin1II	CATG	2 cut(s)	137, 338
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	2 cut(s)	290, 565
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	2 cut(s)	307, 549
Hpy188I	TCNGA	3 cut(s)	148, 564, 570
Hpy188III	TCNNGA	2 cut(s)	125, 211
Hpy8I	GTNNAC	2 cut(s)	307, 549
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	3 cut(s)	271, 432, 478
HpyCH4III	ACNGT	2 cut(s)	553, 579
HpyCH4V	TGCA	4 cut(s)	77, 89, 321, 549
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 245
HpyF3I	CTNAG	2 cut(s)	33, 409
Hsp92I	GRCGYC	1 cut(s)	536
Hsp92II	CATG	2 cut(s)	137, 338
HspAI	GCGC	1 cut(s)	536
KasI	GGCGCC	1 cut(s)	535
Kzo9I	GATC	1 cut(s)	83
LpnPI	CCDG	8 cut(s)	10, 40, 195, 216, 477, 490, 495, 609
Lsp1109I	GCAGC	1 cut(s)	607
LweI	GCATC	1 cut(s)	19
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	1 cut(s)	85
MboI	GATC	1 cut(s)	83
MboII	GAAGA	3 cut(s)	226, 269, 272
MfeI	CAATTG	1 cut(s)	503
MflI	RGATCY	1 cut(s)	83
MhlI	GDGCHC	1 cut(s)	551
MluCI	AATT	5 cut(s)	167, 264, 363, 398, 503
Mly113I	GGCGCC	1 cut(s)	536
MlyI	GAGTC	1 cut(s)	284
MnlI	CCTC	7 cut(s)	121, 238, 295, 418, 432, 570, 577
MseI	TTAA	4 cut(s)	345, 375, 522, 543
MunI	CAATTG	1 cut(s)	503
Mva1269I	GAATGC	1 cut(s)	463
MwoI	GCNNNNNNNGC	2 cut(s)	11, 245
NarI	GGCGCC	1 cut(s)	536
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	1 cut(s)	83
NlaIII	CATG	2 cut(s)	137, 338
NlaIV	GGNNCC	2 cut(s)	537, 572
NmeAIII	GCCGAG	1 cut(s)	307
NmuCI	GTSAC	1 cut(s)	358
NspI	RCATGY	1 cut(s)	338
PciI	ACATGT	1 cut(s)	334
PctI	GAATGC	1 cut(s)	463
PfeI	GAWTC	1 cut(s)	565
PkrI	GCNGC	2 cut(s)	16, 622
PleI	GAGTC	1 cut(s)	284
PluTI	GGCGCC	1 cut(s)	539
PpsI	GAGTC	1 cut(s)	284
PscI	ACATGT	1 cut(s)	334
PspFI	CCCAGC	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	537, 572
PspPI	GGNCC	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	83
SaqAI	TTAA	4 cut(s)	345, 375, 522, 543
SatI	GCNGC	2 cut(s)	15, 621
Sau3AI	GATC	1 cut(s)	83
Sau96I	GGNCC	1 cut(s)	200
SchI	GAGTC	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	551
SetI	ASST	4 cut(s)	106, 241, 306, 375
SfaNI	GCATC	1 cut(s)	19
SfoI	GGCGCC	1 cut(s)	537
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	5 cut(s)	167, 264, 363, 398, 503
SspDI	GGCGCC	1 cut(s)	535
StyI	CCWWGG	2 cut(s)	294, 594
TaaI	ACNGT	2 cut(s)	553, 579
TaqI	TCGA	2 cut(s)	210, 417
TasI	AATT	5 cut(s)	167, 264, 363, 398, 503
TfiI	GAWTC	1 cut(s)	565
Tru1I	TTAA	4 cut(s)	345, 375, 522, 543
Tru9I	TTAA	4 cut(s)	345, 375, 522, 543
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	2 cut(s)	14, 620
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	5 cut(s)	150, 270, 290, 414, 513
VneI	GTGCAC	1 cut(s)	547
XapI	RAATTY	2 cut(s)	264, 398
XceI	RCATGY	1 cut(s)	338
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.