Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001310

Physical Location & Seq

Genomic Coordinates Forward (+)

13740348 .. 13744134

Gene Structure 3787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007120

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2151 bp

ATGCGCATCCTCACTTTCCTAACCTCATCGAGATCAATTGGCCACACTTTCTTCACTCGCCTCACTCGCTCCTCAACCTCTCTACCTCTCCGCTTCAGAACCACCACAACGTCCACCACCATGGCCGCTTCTTCCTCCTCCGAGGACTCGCTCCGCAAAGCCCTCTCCGAGAAGCTCTCGGAGGTCGAGAGCCAGGGCAACCAGGTCCGTTCTCTGAAGACATCCGGCGCCGCCAAGACGGAACTTGACGCCGCCATTGAGGCCTTGAACGCGCTCAAGCTTGAGAAGGCTTCGATTGAGAAAGACCTCCAAGCCACCATCAGCGGCGACGACGGCGGCTCCGTTAACAAGGAGGCGTTACGTCAGGCTGTGGTGAATACTCTGGAGCGCCGTTTGTTTTATATTCCCGCTTTCAAGATTTACGGCGGCGTTGCTGGCCTCTACGACTACGGGCCTCCCGGTTGCGCCGTCAAGTCCAATGTCCTAGGGTTTTGGCGTCAGCATTTTGTGCTTGAAGAGAACATGTTGGAAGTTGACTGCCCTTGTGTCACACCTGAGATTGTTTTGAAAGCATCTGGTCATGTGGAGAAATTCACCGATCTTATGGTTAAGGATGAGGCGTCTGGGATGTGCTACAGAGCTGATCACTTGCTCAAGGATTACTGTAAAGATAAGCTTGAAAAGGACCTCAGAATTACTTCAGAGATGGCAATGGAACTGAAAGAAGTACTTTCCAAATTAGATGTCCTCTCCGCTGAAGAGCTGGGTGCATGTATAAAGAAATATGGTATTACAGCCCCTGACACAAAGAACACTCTCTCGGATCCTTATCCATTCAACCTGATGTTTCAAACATCCATTGGTCCTTCTGGTGTGAGCACCGGGTATATGCGTCCAGAAACTGCCCAAGGCATATTTGTGAATTTTAGGGACTTGTACTATTACAATGGGAACAAACTCCCTTTTGCTGCAGCCCAAATTGGCCAGGCTTTTAGAAATGAGATATCACCTCGCCAAGGTCTTTTGAGAGTCCGTGAGTTTACACTTGCAGAGATTGAGCACTTTGTTGACCCCGAAGACAAATCTCACCCAAAATTCTCTGATGTTGCACATTTGGAGTTTCTGATGTTCCCAAGGGACGAACAGAAGCCTGGCCAGTCTGCAAGGATAATCTCACTAGGTGAAGCTGTATCTTCAAAGGATTCTAAAATTGTCGACAACGAAACCCTTGGCTACTTTATTGGGAGAGTATACCTCTTCCTCACTCATCTGGGTATAGACAAGAACCGTTTAAGGTTCCGGCAGCACCTTGCAAATGAAATGGCTCACTATGCCCAGGATTGTTGGGATGCTGAGATTGAGACTTCATATGGCTGGATTGAGTGCGTGGGTATTGCAGATAGATCTGCGTATGACTTGAAGGCTCATTCGAAATTGGTTATATCTCCTGTAAAGAAAGCGATTGGTCTTGCTTTCAAGGGGGACCAAAAGAAAGTACTTGAAGCTTTGGAGGCCATGAAAGAAGAAGAAGCTCTGAAAATGAAGACTGATTTAGAGTCAAAAGGGGAGGTAGAGTTTTATGTCTGCACTCTAGAGAAGAAAGTATCTATTAATTCAAGTATGGTAACAATTTCAAAGGAGAAAAAGAAAGAACACCAGAGAGTATTCACGCCCTCGGTAATTGAGCCTTCTTTTGGCATCGGTCGGATAATATATTGCCTCTATGAGCACTCATACTACATGAGGCCAAGTAAAGATGGGAATGAACAGTTTAATGTGTTCCGTTTTCCCCCTCTTGTGGCACCCATCAAGTGCACAGTTTTCCCGTTGGTTCAGAAGCAAGAGTATGAGGAAGTTTCTAAAGTCATTTCCAAATCACTGACTGCATCTGGGATATCACATAAAATTGACATTACAGGTACCTCAATCGGGAAACGGTACGCACGGACTGATGAACTGGGTGTTCCATTTGCAATCACAGTTGATTCCGTATCTTCTGTGACAATCCGGGAACGAGACAGCAAGGACCAGATCCGGGTTGATGTGAGTGAGGCAGCGTCTGTCGTCAAGGATATAGCTGAGGGAGTGAGGACATGGGCAGATGTGTGGTCGGCTTTCCCACACCATTCTTCTGGCTCAGCAGACGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

717

Amino Acids

80.0

Weight (kDa)

6.3

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHEP-TRS	PF00458	60 - 103	9.4e-10	WHEP-TRS domain
tRNA-synt_2b	PF00587	296 - 577	1.7e-10	tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon	PF03129	604 - 691	1.6e-17	Anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29880
fragaria_vesca	FvH4_4g22441 FvH4_4g22450 FvH4_4g22450 FvH4_4g22610 FvH4_4g22610
malus_domestica	MD13G1131000.v1.1 MD13G1145800.v1.1 MD16G1141200.v1.1
prunus_persica	Prupe.1G214600_v2.0.a1
pyrus_communis	pycom13g11430 pycom13g12530 pycom16g11160 pycom16g11170
rosa_chinensis	RchiOBHm_Chr1g0361881 RchiOBHm_Chr4g0428711 RchiOBHm_Chr4g0428851
rosa_laevigata	RLG00000007120 RLG00000007133 RLG00000027689 RLG00000027690 RLG00000027694
rosa_multiflora	Rmu_co8208336.1_g000001 Rmu_co8210234.1_g000001 Rmu_sc0003316.1_g000006 Rmu_sc0008612.1_g000003 Rmu_sc0018216.1_g000001 Rmu_ssc0000124.1_g000013
rosa_roxburghii	Rroxscaffold_4G00294630 Rroxscaffold_5G00370530
rosa_rugosa	Rorug01G0292100 Rorug04G0227400 Rorug04G0227500 Rorug04G0229700
rosa_samantha	Rh1AG302800 Rh1BG265900 Rh1BG266000 Rh1CG284000 Rh1DG295900 Rh1DG296000 Rh4AG284700 Rh4AG284900 Rh4AG286400 Rh4BG290700 Rh4BG290900 Rh4BG292200 Rh4CG308200 Rh4DG288200 Rh4DG289400
rosa_wichuraiana	Rw0G020620 Rw1G026830 Rw4G024720 Rw4G024830 Rw7G040280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
Acc65I	GGTACC	1 cut(s)	1919
AccB1I	GGYRCC	3 cut(s)	227, 1801, 1919
AccI	GTMKAC	2 cut(s)	1215, 1251
AccII	CGCG	1 cut(s)	272
AclWI	GGATC	3 cut(s)	818, 831, 2026
AcoI	YGGCCR	4 cut(s)	40, 123, 982, 1153
AcsI	RAATTY	3 cut(s)	590, 922, 1094
AcuI	CTGAAG	4 cut(s)	79, 236, 684, 777
AcyI	GRCGYC	4 cut(s)	228, 249, 496, 620
AdeI	CACNNNGTG	1 cut(s)	1181
AfaI	GTAC	5 cut(s)	729, 938, 1497, 1921, 1940
AfiI	CCNNNNNNNGG	5 cut(s)	1016, 1694, 1798, 1929, 2035
AflIII	ACRYGT	1 cut(s)	522
AjnI	CCWGG	5 cut(s)	192, 201, 984, 1150, 1335
AluBI	AGCT	9 cut(s)	175, 280, 641, 676, 763, 1187, 1505, 1532, 2078
AluI	AGCT	9 cut(s)	175, 280, 641, 676, 763, 1187, 1505, 1532, 2078
Alw21I	GWGCWC	4 cut(s)	881, 1062, 1731, 1817
Alw26I	GTCTC	2 cut(s)	1355, 2010
Alw44I	GTGCAC	1 cut(s)	1813
AlwI	GGATC	3 cut(s)	818, 831, 2026
AlwNI	CAGNNNCTG	3 cut(s)	800, 902, 2060
AoxI	GGCC	9 cut(s)	40, 123, 261, 436, 452, 982, 1153, 1512, 1745
ApaLI	GTGCAC	1 cut(s)	1813
ApeKI	GCWGC	4 cut(s)	968, 971, 1303, 2054
ApoI	RAATTY	3 cut(s)	590, 922, 1094
ArsI	GACNNNNNNTTYG	2 cut(s)	729, 761
AseI	ATTAAT	1 cut(s)	1611
Asp700I	GAANNNNTTC	1 cut(s)	697
Asp718I	GGTACC	1 cut(s)	1919
AspA2I	CCTAGG	1 cut(s)	484
AspLEI	GCGC	5 cut(s)	6, 230, 274, 390, 467
AspS9I	GGNCC	6 cut(s)	205, 452, 685, 863, 1483, 2026
AsuC2I	CCSGG	4 cut(s)	459, 883, 2009, 2036
AsuHPI	GGTGA	5 cut(s)	385, 586, 999, 1079, 1193
AsuII	TTCGAA	1 cut(s)	1430
AvaII	GGWCC	5 cut(s)	205, 685, 863, 1483, 2026
AvrII	CCTAGG	1 cut(s)	484
BaeGI	GKGCMC	1 cut(s)	1817
BalI	TGGCCA	3 cut(s)	42, 984, 1155
BamHI	GGATCC	1 cut(s)	823
BanI	GGYRCC	3 cut(s)	227, 1801, 1919
BbsI	GAAGAC	3 cut(s)	224, 1083, 1550
Bbv12I	GWGCWC	4 cut(s)	881, 1062, 1731, 1817
BbvCI	CCTCAGC	1 cut(s)	2079
BbvI	GCAGC	4 cut(s)	955, 983, 1315, 2066
BccI	CCATC	4 cut(s)	326, 700, 1751, 1814
BceAI	ACGGC	4 cut(s)	349, 375, 439, 452
BciT130I	CCWGG	5 cut(s)	194, 203, 986, 1152, 1337
BclI	TGATCA	1 cut(s)	643
BcnI	CCSGG	4 cut(s)	459, 883, 2009, 2036
BcoDI	GTCTC	2 cut(s)	1355, 2010
BfaI	CTAG	3 cut(s)	485, 1178, 1592
BfmI	CTRYAG	2 cut(s)	634, 969
BfoI	RGCGCY	2 cut(s)	231, 391
BglI	GCCNNNNNGGC	1 cut(s)	260
BglII	AGATCT	1 cut(s)	1403
BlnI	CCTAGG	1 cut(s)	484
BlpI	GCTNAGC	1 cut(s)	2137
BmcAI	AGTACT	2 cut(s)	729, 1497
Bme1390I	CCNGG	9 cut(s)	194, 203, 459, 883, 986, 1152, 1337, 2009, 2036
Bme18I	GGWCC	5 cut(s)	205, 685, 863, 1483, 2026
BmgT120I	GGNCC	6 cut(s)	205, 452, 685, 863, 1483, 2026
BmiI	GGNNCC	7 cut(s)	229, 340, 825, 1298, 1484, 1803, 1921
BmrFI	CCNGG	9 cut(s)	194, 203, 459, 883, 986, 1152, 1337, 2009, 2036
BmrI	ACTGGG	1 cut(s)	1967
BmsI	GCATC	5 cut(s)	15, 581, 1339, 1707, 1895
BmuI	ACTGGG	1 cut(s)	1967
BpiI	GAAGAC	3 cut(s)	224, 1083, 1550
BplI	GAGNNNNNCTC	4 cut(s)	161, 193, 1239, 1271
BpmI	CTGGAG	1 cut(s)	404
Bpu10I	CCTNAGC	1 cut(s)	2079
Bpu1102I	GCTNAGC	1 cut(s)	2137
Bpu14I	TTCGAA	1 cut(s)	1430
BpuEI	CTTGAG	3 cut(s)	260, 302, 638
BpuMI	CCSGG	4 cut(s)	459, 883, 2009, 2036
BsaBI	GATNNNNATC	1 cut(s)	828
BsaHI	GRCGYC	4 cut(s)	228, 249, 496, 620
BsaXI	ACNNNNNCTCC	4 cut(s)	323, 353, 1559, 1589
Bsc4I	CCNNNNNNNGG	5 cut(s)	1016, 1694, 1798, 1929, 2035
Bse1I	ACTGG	2 cut(s)	1156, 1962
Bse3DI	GCAATG	1 cut(s)	717
Bse8I	GATNNNNATC	1 cut(s)	828
BseBI	CCWGG	5 cut(s)	194, 203, 986, 1152, 1337
BseGI	GGATG	6 cut(s)	6, 221, 619, 633, 854, 1354
BseJI	GATNNNNATC	1 cut(s)	828
BseLI	CCNNNNNNNGG	5 cut(s)	1016, 1694, 1798, 1929, 2035
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	5 cut(s)	546, 703, 1344, 2070, 2151
BseNI	ACTGG	2 cut(s)	1156, 1962
BseRI	GAGGAG	2 cut(s)	61, 127
BseSI	GKGCMC	1 cut(s)	1817
BseXI	GCAGC	4 cut(s)	955, 983, 1315, 2066
BseYI	CCCAGC	1 cut(s)	763
BsgI	GTGCAG	1 cut(s)	1570
Bsh1236I	CGCG	1 cut(s)	272
Bsh1285I	CGRYCG	1 cut(s)	1705
BshFI	GGCC	9 cut(s)	42, 125, 263, 438, 454, 984, 1155, 1514, 1747
BshNI	GGYRCC	3 cut(s)	227, 1801, 1919
BsiEI	CGRYCG	1 cut(s)	1705
BsiHKAI	GWGCWC	4 cut(s)	881, 1062, 1731, 1817
BsiSI	CCGG	6 cut(s)	225, 459, 882, 1300, 2008, 2035
BslFI	GGGAC	3 cut(s)	944, 1151, 1496
BslI	CCNNNNNNNGG	5 cut(s)	1016, 1694, 1798, 1929, 2035
BsmAI	GTCTC	2 cut(s)	1355, 2010
BsmFI	GGGAC	3 cut(s)	944, 1151, 1496
BsnI	GGCC	9 cut(s)	42, 125, 263, 438, 454, 984, 1155, 1514, 1747
Bsp119I	TTCGAA	1 cut(s)	1430
Bsp1286I	GDGCHC	4 cut(s)	881, 1062, 1731, 1817
Bsp143I	GATC	6 cut(s)	32, 598, 643, 823, 1403, 2031
Bsp1720I	GCTNAGC	1 cut(s)	2137
Bsp19I	CCATGG	1 cut(s)	120
BspANI	GGCC	9 cut(s)	42, 125, 263, 438, 454, 984, 1155, 1514, 1747
BspCNI	CTCAG	5 cut(s)	547, 702, 1345, 2071, 2150
BspFNI	CGCG	1 cut(s)	272
BspLI	GGNNCC	7 cut(s)	229, 340, 825, 1298, 1484, 1803, 1921
BspMAI	CTGCAG	1 cut(s)	973
BspPI	GGATC	3 cut(s)	818, 831, 2026
BspQI	GCTCTTC	1 cut(s)	753
BspT104I	TTCGAA	1 cut(s)	1430
BspT107I	GGYRCC	3 cut(s)	227, 1801, 1919
BsrDI	GCAATG	1 cut(s)	717
BsrI	ACTGG	2 cut(s)	1156, 1962
BssMI	GATC	6 cut(s)	32, 598, 643, 823, 1403, 2031
BssNAI	GTATAC	1 cut(s)	1252
BssNI	GRCGYC	4 cut(s)	228, 249, 496, 620
BssT1I	CCWWGG	6 cut(s)	120, 484, 907, 1015, 1133, 1228
Bst1107I	GTATAC	1 cut(s)	1252
Bst2UI	CCWGG	5 cut(s)	194, 203, 986, 1152, 1337
Bst4CI	ACNGT	6 cut(s)	665, 1289, 1770, 1819, 1938, 1981
Bst6I	CTCTTC	3 cut(s)	510, 753, 1262
BstACI	GRCGYC	4 cut(s)	228, 249, 496, 620
BstAPI	GCANNNNNTGC	1 cut(s)	508
BstBI	TTCGAA	1 cut(s)	1430
BstC8I	GCNNGC	1 cut(s)	436
BstDEI	CTNAG	5 cut(s)	555, 689, 1353, 2079, 2137
BstDSI	CCRYGG	1 cut(s)	120
BstENI	CCTNNNNNAGG	1 cut(s)	1014
BstF5I	GGATG	6 cut(s)	6, 221, 619, 633, 854, 1354
BstFNI	CGCG	1 cut(s)	272
BstH2I	RGCGCY	2 cut(s)	231, 391
BstHHI	GCGC	5 cut(s)	6, 230, 274, 390, 467
BstKTI	GATC	6 cut(s)	35, 601, 646, 826, 1406, 2034
BstMAI	GTCTC	2 cut(s)	1355, 2010
BstMBI	GATC	6 cut(s)	32, 598, 643, 823, 1403, 2031
BstMCI	CGRYCG	1 cut(s)	1705
BstMWI	GCNNNNNNNGC	8 cut(s)	66, 260, 269, 333, 435, 508, 1331, 1511
BstNI	CCWGG	5 cut(s)	194, 203, 986, 1152, 1337
BstNSI	RCATGY	2 cut(s)	526, 774
BstSCI	CCNGG	9 cut(s)	192, 201, 457, 881, 984, 1150, 1335, 2007, 2034
BstSFI	CTRYAG	2 cut(s)	634, 969
BstSLI	GKGCMC	1 cut(s)	1817
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	4 cut(s)	955, 983, 1315, 2066
BstV2I	GAAGAC	3 cut(s)	224, 1083, 1550
BstX2I	RGATCY	3 cut(s)	823, 1403, 2031
BstXI	CCANNNNNNTGG	2 cut(s)	121, 2132
BstYI	RGATCY	3 cut(s)	823, 1403, 2031
BstZ17I	GTATAC	1 cut(s)	1252
BsuRI	GGCC	9 cut(s)	42, 125, 263, 438, 454, 984, 1155, 1514, 1747
BtgI	CCRYGG	1 cut(s)	120
BtsCI	GGATG	6 cut(s)	6, 221, 619, 633, 854, 1354
BtsIMutI	CAGTG	1 cut(s)	1877
Cac8I	GCNNGC	1 cut(s)	436
CaiI	CAGNNNCTG	3 cut(s)	800, 902, 2060
CfoI	GCGC	5 cut(s)	6, 230, 274, 390, 467
Cfr13I	GGNCC	6 cut(s)	205, 452, 685, 863, 1483, 2026
CseI	GACGC	5 cut(s)	257, 485, 609, 881, 2046
CsiI	ACCWGGT	1 cut(s)	201
Csp6I	GTAC	5 cut(s)	728, 937, 1496, 1920, 1939
CviAII	CATG	7 cut(s)	121, 523, 581, 771, 1516, 1741, 2094
CviQI	GTAC	5 cut(s)	728, 937, 1496, 1920, 1939
DdeI	CTNAG	5 cut(s)	555, 689, 1353, 2079, 2137
DinI	GGCGCC	1 cut(s)	229
DpnI	GATC	6 cut(s)	34, 600, 645, 825, 1405, 2033
DpnII	GATC	6 cut(s)	32, 598, 643, 823, 1403, 2031
DraIII	CACNNNGTG	1 cut(s)	1181
EaeI	YGGCCR	4 cut(s)	40, 123, 982, 1153
Eam1104I	CTCTTC	3 cut(s)	510, 753, 1262
EarI	CTCTTC	3 cut(s)	510, 753, 1262
Eco130I	CCWWGG	6 cut(s)	120, 484, 907, 1015, 1133, 1228
Eco147I	AGGCCT	1 cut(s)	263
Eco32I	GATATC	2 cut(s)	1005, 1896
Eco47I	GGWCC	5 cut(s)	205, 685, 863, 1483, 2026
Eco57I	CTGAAG	4 cut(s)	79, 236, 684, 777
EcoNI	CCTNNNNNAGG	1 cut(s)	1014
EcoO109I	RGGNCCY	1 cut(s)	685
EcoRII	CCWGG	5 cut(s)	192, 201, 984, 1150, 1335
EcoRV	GATATC	2 cut(s)	1005, 1896
EcoT14I	CCWWGG	6 cut(s)	120, 484, 907, 1015, 1133, 1228
EgeI	GGCGCC	1 cut(s)	229
EheI	GGCGCC	1 cut(s)	229
ErhI	CCWWGG	6 cut(s)	120, 484, 907, 1015, 1133, 1228
FaeI	CATG	7 cut(s)	124, 526, 584, 774, 1519, 1744, 2097
FalI	AAGNNNNNCTT	4 cut(s)	660, 692, 714, 746
FaqI	GGGAC	3 cut(s)	944, 1151, 1496
FatI	CATG	7 cut(s)	120, 522, 580, 770, 1515, 1740, 2093
FauI	CCCGC	1 cut(s)	415
FauNDI	CATATG	1 cut(s)	1369
FbaI	TGATCA	1 cut(s)	643
FblI	GTMKAC	2 cut(s)	1215, 1251
FokI	GGATG	5 cut(s)	208, 626, 640, 841, 1361
FspAI	RTGCGCAY	1 cut(s)	5
FspBI	CTAG	3 cut(s)	485, 1178, 1592
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	5 cut(s)	5, 229, 273, 389, 466
GsaI	CCCAGC	1 cut(s)	767
GsuI	CTGGAG	1 cut(s)	404
HaeII	RGCGCY	2 cut(s)	231, 391
HaeIII	GGCC	9 cut(s)	42, 125, 263, 438, 454, 984, 1155, 1514, 1747
HapII	CCGG	6 cut(s)	225, 459, 882, 1300, 2008, 2035
HgaI	GACGC	5 cut(s)	257, 485, 609, 881, 2046
HhaI	GCGC	5 cut(s)	6, 230, 274, 390, 467
Hin1I	GRCGYC	4 cut(s)	228, 249, 496, 620
Hin1II	CATG	7 cut(s)	124, 526, 584, 774, 1519, 1744, 2097
Hin6I	GCGC	5 cut(s)	4, 228, 272, 388, 465
HinP1I	GCGC	5 cut(s)	4, 228, 272, 388, 465
HincII	GTYRAC	4 cut(s)	346, 535, 1069, 1216
HindII	GTYRAC	4 cut(s)	346, 535, 1069, 1216
HindIII	AAGCTT	3 cut(s)	278, 674, 1503
HinfI	GANTC	5 cut(s)	146, 1029, 1202, 1556, 1985
HpaI	GTTAAC	1 cut(s)	346
HpaII	CCGG	6 cut(s)	225, 459, 882, 1300, 2008, 2035
HphI	GGTGA	5 cut(s)	385, 586, 999, 1079, 1193
Hpy166II	GTNNAC	8 cut(s)	114, 346, 535, 1041, 1069, 1216, 1252, 1815
Hpy188III	TCNNGA	7 cut(s)	30, 187, 383, 415, 896, 1592, 1930
Hpy8I	GTNNAC	8 cut(s)	114, 346, 535, 1041, 1069, 1216, 1252, 1815
Hpy99I	CGWCG	2 cut(s)	332, 335
HpyAV	CCTTC	4 cut(s)	280, 876, 1414, 1698
HpyCH4III	ACNGT	6 cut(s)	665, 1289, 1770, 1819, 1938, 1981
HpyCH4IV	ACGT	2 cut(s)	110, 361
HpyF10VI	GCNNNNNNNGC	8 cut(s)	66, 260, 269, 333, 435, 508, 1331, 1511
HpyF3I	CTNAG	5 cut(s)	555, 689, 1353, 2079, 2137
HpySE526I	ACGT	2 cut(s)	110, 361
Hsp92I	GRCGYC	4 cut(s)	228, 249, 496, 620
Hsp92II	CATG	7 cut(s)	124, 526, 584, 774, 1519, 1744, 2097
HspAI	GCGC	5 cut(s)	4, 228, 272, 388, 465
KasI	GGCGCC	1 cut(s)	227
KpnI	GGTACC	1 cut(s)	1923
Ksp22I	TGATCA	1 cut(s)	643
KspAI	GTTAAC	1 cut(s)	346
Kzo9I	GATC	6 cut(s)	32, 598, 643, 823, 1403, 2031
LguI	GCTCTTC	1 cut(s)	753
LmnI	GCTCC	4 cut(s)	74, 156, 344, 385
Lsp1109I	GCAGC	4 cut(s)	955, 983, 1315, 2066
LweI	GCATC	5 cut(s)	15, 581, 1339, 1707, 1895
MabI	ACCWGGT	1 cut(s)	201
MaeI	CTAG	3 cut(s)	485, 1178, 1592
MaeII	ACGT	2 cut(s)	110, 361
MaeIII	GTNAC	4 cut(s)	357, 547, 1624, 1999
MalI	GATC	6 cut(s)	34, 600, 645, 825, 1405, 2033
MboI	GATC	6 cut(s)	32, 598, 643, 823, 1403, 2031
MfeI	CAATTG	1 cut(s)	36
MflI	RGATCY	3 cut(s)	823, 1403, 2031
MhlI	GDGCHC	4 cut(s)	881, 1062, 1731, 1817
MlsI	TGGCCA	3 cut(s)	42, 984, 1155
MluNI	TGGCCA	3 cut(s)	42, 984, 1155
Mly113I	GGCGCC	1 cut(s)	228
MlyI	GAGTC	3 cut(s)	140, 1038, 1565
MmeI	TCCRAC	2 cut(s)	507, 1685
Mox20I	TGGCCA	3 cut(s)	42, 984, 1155
MroXI	GAANNNNTTC	1 cut(s)	697
MscI	TGGCCA	3 cut(s)	42, 984, 1155
MseI	TTAA	5 cut(s)	345, 609, 1292, 1611, 1773
MslI	CAYNNNNRTG	2 cut(s)	119, 917
Msp20I	TGGCCA	3 cut(s)	42, 984, 1155
MspA1I	CMGCKG	2 cut(s)	324, 755
MspI	CCGG	6 cut(s)	225, 459, 882, 1300, 2008, 2035
MspR9I	CCNGG	9 cut(s)	194, 203, 459, 883, 986, 1152, 1337, 2009, 2036
MunI	CAATTG	1 cut(s)	36
MvaI	CCWGG	5 cut(s)	194, 203, 986, 1152, 1337
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	8 cut(s)	66, 260, 269, 333, 435, 508, 1331, 1511
NarI	GGCGCC	1 cut(s)	228
NciI	CCSGG	4 cut(s)	459, 883, 2009, 2036
NcoI	CCATGG	1 cut(s)	120
NdeI	CATATG	1 cut(s)	1369
NdeII	GATC	6 cut(s)	32, 598, 643, 823, 1403, 2031
NlaIII	CATG	7 cut(s)	124, 526, 584, 774, 1519, 1744, 2097
NlaIV	GGNNCC	7 cut(s)	229, 340, 825, 1298, 1484, 1803, 1921
NmuCI	GTSAC	2 cut(s)	547, 1999
NsbI	TGCGCA	1 cut(s)	5
NspI	RCATGY	2 cut(s)	526, 774
NspV	TTCGAA	1 cut(s)	1430
PceI	AGGCCT	1 cut(s)	263
PciI	ACATGT	1 cut(s)	522
PciSI	GCTCTTC	1 cut(s)	753
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PdmI	GAANNNNTTC	1 cut(s)	697
PfeI	GAWTC	2 cut(s)	1202, 1985
PfoI	TCCNGGA	1 cut(s)	2007
PleI	GAGTC	3 cut(s)	140, 1037, 1564
PluTI	GGCGCC	1 cut(s)	231
PpsI	GAGTC	3 cut(s)	140, 1037, 1564
PpuMI	RGGWCCY	1 cut(s)	685
PscI	ACATGT	1 cut(s)	522
PshBI	ATTAAT	1 cut(s)	1611
Psp5II	RGGWCCY	1 cut(s)	685
Psp6I	CCWGG	5 cut(s)	192, 201, 984, 1150, 1335
PspFI	CCCAGC	1 cut(s)	763
PspGI	CCWGG	5 cut(s)	192, 201, 984, 1150, 1335
PspN4I	GGNNCC	7 cut(s)	229, 340, 825, 1298, 1484, 1803, 1921
PspPI	GGNCC	6 cut(s)	205, 452, 685, 863, 1483, 2026
PspPPI	RGGWCCY	1 cut(s)	685
PstI	CTGCAG	1 cut(s)	973
PstNI	CAGNNNCTG	3 cut(s)	800, 902, 2060
PsuI	RGATCY	3 cut(s)	823, 1403, 2031
RsaI	GTAC	5 cut(s)	729, 938, 1497, 1921, 1940
RsaNI	GTAC	5 cut(s)	728, 937, 1496, 1920, 1939
RseI	CAYNNNNRTG	2 cut(s)	119, 917
SalI	GTCGAC	1 cut(s)	1214
SapI	GCTCTTC	1 cut(s)	753
SaqAI	TTAA	5 cut(s)	345, 609, 1292, 1611, 1773
Sau3AI	GATC	6 cut(s)	32, 598, 643, 823, 1403, 2031
Sau96I	GGNCC	6 cut(s)	205, 452, 685, 863, 1483, 2026
ScaI	AGTACT	2 cut(s)	729, 1497
SchI	GAGTC	3 cut(s)	140, 1038, 1565
ScrFI	CCNGG	9 cut(s)	194, 203, 459, 883, 986, 1152, 1337, 2009, 2036
SduI	GDGCHC	4 cut(s)	881, 1062, 1731, 1817
SexAI	ACCWGGT	1 cut(s)	201
SfaNI	GCATC	5 cut(s)	15, 581, 1339, 1707, 1895
SfcI	CTRYAG	2 cut(s)	634, 969
SfoI	GGCGCC	1 cut(s)	229
SfuI	TTCGAA	1 cut(s)	1430
SinI	GGWCC	5 cut(s)	205, 685, 863, 1483, 2026
SmiMI	CAYNNNNRTG	2 cut(s)	119, 917
SmlI	CTYRAG	3 cut(s)	275, 281, 653
SmoI	CTYRAG	3 cut(s)	275, 281, 653
SseBI	AGGCCT	1 cut(s)	263
SspDI	GGCGCC	1 cut(s)	227
SspMI	CTAG	3 cut(s)	485, 1178, 1592
StuI	AGGCCT	1 cut(s)	263
StyD4I	CCNGG	9 cut(s)	192, 201, 457, 881, 984, 1150, 1335, 2007, 2034
StyI	CCWWGG	6 cut(s)	120, 484, 907, 1015, 1133, 1228
TaaI	ACNGT	6 cut(s)	665, 1289, 1770, 1819, 1938, 1981
TaiI	ACGT	2 cut(s)	113, 364
TaqI	TCGA	5 cut(s)	29, 186, 293, 1215, 1430
TaqII	GACCGA	1 cut(s)	1691
TatI	WGTACW	3 cut(s)	727, 936, 1495
TauI	GCSGC	6 cut(s)	128, 233, 254, 327, 339, 429
TfiI	GAWTC	2 cut(s)	1202, 1985
Tru1I	TTAA	5 cut(s)	345, 609, 1292, 1611, 1773
Tru9I	TTAA	5 cut(s)	345, 609, 1292, 1611, 1773
TscAI	CASTG	1 cut(s)	1884
TseFI	GTSAC	2 cut(s)	547, 1999
TseI	GCWGC	4 cut(s)	968, 971, 1303, 2054
Tsp45I	GTSAC	2 cut(s)	547, 1999
TspDTI	ATGAA	6 cut(s)	1332, 1356, 1532, 1556, 1779, 1968
TspGWI	ACGGA	7 cut(s)	197, 254, 331, 1022, 1772, 1960, 1978
TspRI	CASTG	1 cut(s)	1884
VneI	GTGCAC	1 cut(s)	1813
VpaK11BI	GGWCC	5 cut(s)	205, 685, 863, 1483, 2026
VspI	ATTAAT	1 cut(s)	1611
XagI	CCTNNNNNAGG	1 cut(s)	1014
XapI	RAATTY	3 cut(s)	590, 922, 1094
XbaI	TCTAGA	1 cut(s)	1591
XceI	RCATGY	2 cut(s)	526, 774
XmaJI	CCTAGG	1 cut(s)	484
XmiI	GTMKAC	2 cut(s)	1215, 1251
XmnI	GAANNNNTTC	1 cut(s)	697
XspI	CTAG	3 cut(s)	485, 1178, 1592
ZrmI	AGTACT	2 cut(s)	729, 1497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.