Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001310

Physical Location & Seq

Genomic Coordinates Forward (+)

8737604 .. 8738570

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12530.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGTCGACAATCAAACTTTAGCCTATTTCATTGGCCGAGTCTACCTCTTCCTCACACGGTTGGGTATAGACGAGGAGCGTCTAAGGTTCCGCCAGCACCTGCCGAATGAAATGGCGCACTATGCTGCTGACTGCTGGGATGCTGAGATCGAGACTTCATACGGGTGGATTGAGTGCGTTGGGATTGCAGATAGATCTGAATATGATCTTCAAGCTCATTCAGTAAAAAGTAATAAAGATCTTATGGCTCATGAAAAATATTCAGAACCAAGAGAAGTGGAGGAATTGGTTATATCTCCGGTGGTTAAAGAGACCGGCCTTGCTTTCAAGGCGAACGGAAGGAATGTAGTTGAAGCACTGAAGACCATGAATGAAAAAGAAGCTTTGGAGATGAAAGCGGATTTAGAGGCGAACAGCGAGGTGAAGTTCAATGTCTGCACACTAGGGGAAAATGTATCAATAAAGCAGAATATGGTGATGATTTCATACAAGAAAAGGAAAGAACACCAGAGAAGATTCACACCCTCAGTGATCGAGCCTTCGTTTGGAATCGGGCGGATCATCTACTGCCTCTTCGAGCATTCATACTACACCAGACAAAGTCAAGCTGGAGAAGAACCGTCGAATAACTTGAACGTGCTCCGTTTCCCTCCTCTCGTGGTGCCCTTTAAGTGCACGGTTGTCCCGCTGGTTCAGAGCAAGGGGTATGAGGAGGTGGCTAAAGGCATTTCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

246

Amino Acids

28.09

Weight (kDa)

5.94

Isoelectric Point (pI)

52.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29880
fragaria_vesca	FvH4_4g22441 FvH4_4g22450 FvH4_4g22450 FvH4_4g22610 FvH4_4g22610
malus_domestica	MD13G1131000.v1.1 MD13G1145800.v1.1 MD16G1141200.v1.1
prunus_persica	Prupe.1G214600_v2.0.a1
pyrus_communis	pycom13g11430 pycom13g12530 pycom16g11160 pycom16g11170
rosa_chinensis	RchiOBHm_Chr1g0361881 RchiOBHm_Chr4g0428711 RchiOBHm_Chr4g0428851
rosa_laevigata	RLG00000007120 RLG00000007133 RLG00000027689 RLG00000027690 RLG00000027694
rosa_multiflora	Rmu_co8208336.1_g000001 Rmu_co8210234.1_g000001 Rmu_sc0003316.1_g000006 Rmu_sc0008612.1_g000003 Rmu_sc0018216.1_g000001 Rmu_ssc0000124.1_g000013
rosa_roxburghii	Rroxscaffold_4G00294630 Rroxscaffold_5G00370530
rosa_rugosa	Rorug01G0292100 Rorug04G0227400 Rorug04G0227500 Rorug04G0229700
rosa_samantha	Rh1AG302800 Rh1BG265900 Rh1BG266000 Rh1CG284000 Rh1DG295900 Rh1DG296000 Rh4AG284700 Rh4AG284900 Rh4AG286400 Rh4BG290700 Rh4BG290900 Rh4BG292200 Rh4CG308200 Rh4DG288200 Rh4DG289400
rosa_wichuraiana	Rw0G020620 Rw1G026830 Rw4G024720 Rw4G024830 Rw7G040280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	108
Acc36I	ACCTGC	1 cut(s)	108
AccB1I	GGYRCC	1 cut(s)	661
AccI	GTMKAC	2 cut(s)	6, 42
AciI	CCGC	4 cut(s)	91, 398, 556, 686
AclWI	GGATC	1 cut(s)	566
AcoI	YGGCCR	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	380
AfiI	CCNNNNNNNGG	1 cut(s)	545
AgsI	TTSAA	5 cut(s)	212, 328, 353, 430, 634
AluBI	AGCT	3 cut(s)	215, 383, 608
AluI	AGCT	3 cut(s)	215, 383, 608
Alw21I	GWGCWC	2 cut(s)	642, 677
Alw26I	GTCTC	2 cut(s)	146, 305
Alw44I	GTGCAC	1 cut(s)	673
AlwI	GGATC	1 cut(s)	566
AlwNI	CAGNNNCTG	1 cut(s)	100
AoxI	GGCC	2 cut(s)	34, 316
ApaLI	GTGCAC	1 cut(s)	673
ApeKI	GCWGC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	118
AsuHPI	GGTGA	2 cut(s)	433, 487
BaeGI	GKGCMC	2 cut(s)	666, 677
BanI	GGYRCC	1 cut(s)	661
BauI	CACGAG	1 cut(s)	656
BbsI	GAAGAC	1 cut(s)	368
Bbv12I	GWGCWC	2 cut(s)	642, 677
BbvI	GCAGC	1 cut(s)	112
BcoDI	GTCTC	2 cut(s)	146, 305
BfaI	CTAG	1 cut(s)	443
BfuAI	ACCTGC	1 cut(s)	108
BglII	AGATCT	2 cut(s)	194, 238
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
BmiI	GGNNCC	2 cut(s)	89, 663
BmsI	GCATC	1 cut(s)	130
BpiI	GAAGAC	1 cut(s)	368
BplI	GAGNNNNNCTC	2 cut(s)	30, 62
BpmI	CTGGAG	1 cut(s)	630
BsaI	GGTCTC	1 cut(s)	305
BsaWI	WCCGGW	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	1 cut(s)	545
Bse118I	RCCGGY	1 cut(s)	314
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	545
BseMII	CTCAG	2 cut(s)	135, 540
BseRI	GAGGAG	3 cut(s)	89, 642, 725
BseSI	GKGCMC	2 cut(s)	666, 677
BseXI	GCAGC	1 cut(s)	112
BseYI	CCCAGC	1 cut(s)	135
BsgI	GTGCAG	1 cut(s)	421
BshFI	GGCC	2 cut(s)	36, 318
BshNI	GGYRCC	1 cut(s)	661
BsiHKAI	GWGCWC	2 cut(s)	642, 677
BsiSI	CCGG	2 cut(s)	299, 315
BslFI	GGGAC	1 cut(s)	668
BslI	CCNNNNNNNGG	1 cut(s)	545
BsmAI	GTCTC	2 cut(s)	146, 305
BsmFI	GGGAC	1 cut(s)	668
BsmI	GAATGC	1 cut(s)	580
BsnI	GGCC	2 cut(s)	36, 318
Bso31I	GGTCTC	1 cut(s)	305
Bsp1286I	GDGCHC	3 cut(s)	642, 666, 677
Bsp143I	GATC	6 cut(s)	147, 194, 205, 238, 531, 558
BspACI	CCGC	4 cut(s)	91, 398, 556, 686
BspANI	GGCC	2 cut(s)	36, 318
BspCNI	CTCAG	2 cut(s)	136, 539
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	2 cut(s)	89, 663
BspMI	ACCTGC	1 cut(s)	108
BspPI	GGATC	1 cut(s)	566
BspT107I	GGYRCC	1 cut(s)	661
BspTNI	GGTCTC	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	314
BssAI	RCCGGY	1 cut(s)	314
BssMI	GATC	6 cut(s)	147, 194, 205, 238, 531, 558
BssSI	CACGAG	1 cut(s)	656
Bst2BI	CACGAG	1 cut(s)	656
Bst4CI	ACNGT	3 cut(s)	60, 621, 679
Bst6I	CTCTTC	2 cut(s)	53, 578
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	3 cut(s)	83, 144, 526
BstF5I	GGATG	1 cut(s)	145
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	6 cut(s)	150, 197, 208, 241, 534, 561
BstMAI	GTCTC	2 cut(s)	146, 305
BstMBI	GATC	6 cut(s)	147, 194, 205, 238, 531, 558
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 329
BstSLI	GKGCMC	2 cut(s)	666, 677
BstV1I	GCAGC	1 cut(s)	112
BstV2I	GAAGAC	1 cut(s)	368
BstX2I	RGATCY	2 cut(s)	194, 238
BstYI	RGATCY	2 cut(s)	194, 238
BsuRI	GGCC	2 cut(s)	36, 318
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	2 cut(s)	356, 534
BveI	ACCTGC	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	95
CaiI	CAGNNNCTG	1 cut(s)	100
CciI	TCATGA	1 cut(s)	250
CfoI	GCGC	1 cut(s)	118
Cfr10I	RCCGGY	1 cut(s)	314
CseI	GACGC	1 cut(s)	68
CspCI	CAANNNNNGTGG	2 cut(s)	258, 293
CviAII	CATG	2 cut(s)	251, 367
CviJI	RGCY	9 cut(s)	23, 36, 215, 248, 318, 383, 538, 608, 719
CviKI_1	RGCY	9 cut(s)	23, 36, 215, 248, 318, 383, 538, 608, 719
DdeI	CTNAG	3 cut(s)	83, 144, 526
DpnI	GATC	6 cut(s)	149, 196, 207, 240, 533, 560
DpnII	GATC	6 cut(s)	147, 194, 205, 238, 531, 558
EaeI	YGGCCR	1 cut(s)	34
Eam1104I	CTCTTC	2 cut(s)	53, 578
EarI	CTCTTC	2 cut(s)	53, 578
EciI	GGCGGA	2 cut(s)	80, 571
Eco31I	GGTCTC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	380
FaeI	CATG	2 cut(s)	254, 370
FaqI	GGGAC	1 cut(s)	668
FatI	CATG	2 cut(s)	250, 366
FauI	CCCGC	1 cut(s)	693
FblI	GTMKAC	2 cut(s)	6, 42
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	443
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	126
GsaI	CCCAGC	1 cut(s)	139
GsuI	CTGGAG	1 cut(s)	630
HaeIII	GGCC	2 cut(s)	36, 318
HapII	CCGG	2 cut(s)	299, 315
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	118
Hin1II	CATG	2 cut(s)	254, 370
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HindIII	AAGCTT	1 cut(s)	381
HinfI	GANTC	3 cut(s)	39, 516, 549
HpaII	CCGG	2 cut(s)	299, 315
HphI	GGTGA	2 cut(s)	433, 487
Hpy166II	GTNNAC	3 cut(s)	7, 43, 675
Hpy188I	TCNGA	3 cut(s)	199, 265, 696
Hpy188III	TCNNGA	2 cut(s)	151, 251
Hpy8I	GTNNAC	3 cut(s)	7, 43, 675
Hpy99I	CGWCG	1 cut(s)	625
HpyAV	CCTTC	2 cut(s)	333, 549
HpyCH4III	ACNGT	3 cut(s)	60, 621, 679
HpyCH4IV	ACGT	1 cut(s)	636
HpyCH4V	TGCA	3 cut(s)	188, 438, 675
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 329
HpyF3I	CTNAG	3 cut(s)	83, 144, 526
HpySE526I	ACGT	1 cut(s)	636
Hsp92II	CATG	2 cut(s)	254, 370
HspAI	GCGC	1 cut(s)	116
Kzo9I	GATC	6 cut(s)	147, 194, 205, 238, 531, 558
LmnI	GCTCC	2 cut(s)	76, 645
LpnPI	CCDG	9 cut(s)	107, 113, 121, 312, 328, 521, 594, 607, 674
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	1 cut(s)	636
MalI	GATC	6 cut(s)	149, 196, 207, 240, 533, 560
MboI	GATC	6 cut(s)	147, 194, 205, 238, 531, 558
MboII	GAAGA	6 cut(s)	40, 200, 373, 525, 565, 626
MflI	RGATCY	2 cut(s)	194, 238
MhlI	GDGCHC	3 cut(s)	642, 666, 677
MluCI	AATT	1 cut(s)	284
MlyI	GAGTC	1 cut(s)	48
MseI	TTAA	2 cut(s)	306, 669
MslI	CAYNNNNRTG	1 cut(s)	163
MspA1I	CMGCKG	1 cut(s)	688
MspI	CCGG	2 cut(s)	299, 315
Mva1269I	GAATGC	1 cut(s)	580
MwoI	GCNNNNNNNGC	2 cut(s)	122, 329
NdeII	GATC	6 cut(s)	147, 194, 205, 238, 531, 558
NlaIII	CATG	2 cut(s)	254, 370
NlaIV	GGNNCC	2 cut(s)	89, 663
NmeAIII	GCCGAG	1 cut(s)	62
PagI	TCATGA	1 cut(s)	250
PaqCI	CACCTGC	1 cut(s)	108
PctI	GAATGC	1 cut(s)	580
PfeI	GAWTC	2 cut(s)	516, 549
PflFI	GACNNNGTC	1 cut(s)	600
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PspFI	CCCAGC	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	89, 663
PstNI	CAGNNNCTG	1 cut(s)	100
PsuI	RGATCY	2 cut(s)	194, 238
PsyI	GACNNNGTC	1 cut(s)	600
RseI	CAYNNNNRTG	1 cut(s)	163
SalI	GTCGAC	1 cut(s)	5
SaqAI	TTAA	2 cut(s)	306, 669
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	6 cut(s)	147, 194, 205, 238, 531, 558
SchI	GAGTC	1 cut(s)	48
SduI	GDGCHC	3 cut(s)	642, 666, 677
SetI	ASST	9 cut(s)	48, 89, 102, 217, 385, 423, 610, 639, 717
SfaNI	GCATC	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	163
Sse9I	AATT	1 cut(s)	284
SsiI	CCGC	4 cut(s)	91, 398, 556, 686
SspI	AATATT	1 cut(s)	260
SspMI	CTAG	1 cut(s)	443
TaaI	ACNGT	3 cut(s)	60, 621, 679
TaiI	ACGT	1 cut(s)	639
TaqI	TCGA	5 cut(s)	6, 150, 534, 576, 623
TasI	AATT	1 cut(s)	284
TfiI	GAWTC	2 cut(s)	516, 549
Tru1I	TTAA	2 cut(s)	306, 669
Tru9I	TTAA	2 cut(s)	306, 669
TscAI	CASTG	2 cut(s)	363, 534
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	9 cut(s)	19, 123, 147, 267, 383, 387, 407, 474, 573
TspGWI	ACGGA	2 cut(s)	351, 632
TspRI	CASTG	2 cut(s)	363, 534
Tth111I	GACNNNGTC	1 cut(s)	600
VneI	GTGCAC	1 cut(s)	673
XmiI	GTMKAC	2 cut(s)	6, 42
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.