Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001310

Physical Location & Seq

Genomic Coordinates Forward (+)

39135699 .. 39137596

Gene Structure 1898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0227500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGGTTTTGATCTTGAATCTGTAGCAGAGGCAACCTCAGGGCCATTGGAGCTCTGGTCAGCGTCACCATCTTGTACCCACTTGATACTTGCAAGACCAAATACCAAGCTGAAGTCCGAGCTCAGAATCAGCAAAAGTACAGCTAATTTTGGTGCTAACTGCTTGTATGTAATGAGCGTTCTTGTTGCCCAAATTGCAAATTTCAATGGGAATGTCACTGTAATTTGTCATGCAGACTGGCTTTTTCAAAGGAACATTTCTGATGTTTTCTGGGAAGCAATTTCTACCCGTCAGGTTGTACTTGGAGAAAAGTGGAAACAAAACCATGGGTACAAAAGCAAACTTGATAGTTGCAGCATTGCAGCAGCTGCTGGAGCTTGCACAGTCATAGTGACAATGCCATTGGATACAGTATCATCAAGGATGCAAACAAGTGAGTTTGGGAAATCCAAAGTACTCTGGAAGACCCTGTCAGAGGGAACTTGGATTGAAGCGTTTGATGGTCTTGGCATATCACTTCTTTTGACTTCTAACCCATCAATCCAGTATACGGTATTTGATCAGCTGAAGCAAAGGCTATTGATTGGGCAGCTGAGCAAAAGAACAGGTACAGAGTCATCTCCAGAAGCTCTTTCTGCTTTTTCTGCTTTTGCTTTGCGTGTGGTCTCAAAGTGTATCGCGTCTTGCTTGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

231

Amino Acids

25.14

Weight (kDa)

8.47

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	116 - 193	2.4e-07	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29880
fragaria_vesca	FvH4_4g22441 FvH4_4g22450 FvH4_4g22450 FvH4_4g22610 FvH4_4g22610
malus_domestica	MD13G1131000.v1.1 MD13G1145800.v1.1 MD16G1141200.v1.1
prunus_persica	Prupe.1G214600_v2.0.a1
pyrus_communis	pycom13g11430 pycom13g12530 pycom16g11160 pycom16g11170
rosa_chinensis	RchiOBHm_Chr1g0361881 RchiOBHm_Chr4g0428711 RchiOBHm_Chr4g0428851
rosa_laevigata	RLG00000007120 RLG00000007133 RLG00000027689 RLG00000027690 RLG00000027694
rosa_multiflora	Rmu_co8208336.1_g000001 Rmu_co8210234.1_g000001 Rmu_sc0003316.1_g000006 Rmu_sc0008612.1_g000003 Rmu_sc0018216.1_g000001 Rmu_ssc0000124.1_g000013
rosa_roxburghii	Rroxscaffold_4G00294630 Rroxscaffold_5G00370530
rosa_rugosa	Rorug01G0292100 Rorug04G0227400 Rorug04G0227500 Rorug04G0229700
rosa_samantha	Rh1AG302800 Rh1BG265900 Rh1BG266000 Rh1CG284000 Rh1DG295900 Rh1DG296000 Rh4AG284700 Rh4AG284900 Rh4AG286400 Rh4BG290700 Rh4BG290900 Rh4BG292200 Rh4CG308200 Rh4DG288200 Rh4DG289400
rosa_wichuraiana	Rw0G020620 Rw1G026830 Rw4G024720 Rw4G024830 Rw7G040280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	548
AccII	CGCG	1 cut(s)	680
AcsI	RAATTY	1 cut(s)	199
AcuI	CTGAAG	2 cut(s)	131, 587
AfaI	GTAC	6 cut(s)	76, 139, 300, 332, 456, 610
AfiI	CCNNNNNNNGG	2 cut(s)	475, 550
AgsI	TTSAA	4 cut(s)	17, 205, 248, 491
AluBI	AGCT	9 cut(s)	52, 109, 121, 143, 368, 377, 565, 592, 629
AluI	AGCT	9 cut(s)	52, 109, 121, 143, 368, 377, 565, 592, 629
Alw21I	GWGCWC	2 cut(s)	54, 123
Alw26I	GTCTC	1 cut(s)	670
AlwNI	CAGNNNCTG	2 cut(s)	368, 371
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	5 cut(s)	354, 362, 365, 368, 589
ApoI	RAATTY	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	57
AxyI	CCTNAGG	1 cut(s)	37
BanII	GRGCYC	2 cut(s)	54, 123
BbsI	GAAGAC	1 cut(s)	470
Bbv12I	GWGCWC	2 cut(s)	54, 123
BbvI	GCAGC	5 cut(s)	355, 366, 374, 377, 601
BccI	CCATC	3 cut(s)	76, 494, 544
BciVI	GTATCC	1 cut(s)	400
BclI	TGATCA	1 cut(s)	559
BcoDI	GTCTC	1 cut(s)	670
BfmI	CTRYAG	1 cut(s)	21
BfuI	GTATCC	1 cut(s)	400
BisI	GCNGC	5 cut(s)	355, 363, 366, 369, 590
BlpI	GCTNAGC	1 cut(s)	593
BlsI	GCNGC	5 cut(s)	356, 364, 367, 370, 591
BmcAI	AGTACT	1 cut(s)	456
BmgT120I	GGNCC	1 cut(s)	41
BmsI	GCATC	1 cut(s)	414
BpiI	GAAGAC	1 cut(s)	470
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	2 cut(s)	393, 606
Bpu1102I	GCTNAGC	1 cut(s)	593
BsaI	GGTCTC	1 cut(s)	670
BsaJI	CCNNGG	1 cut(s)	325
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bsc4I	CCNNNNNNNGG	2 cut(s)	475, 550
Bse1I	ACTGG	2 cut(s)	242, 544
Bse21I	CCTNAGG	1 cut(s)	37
Bse3DI	GCAATG	1 cut(s)	357
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	2 cut(s)	475, 550
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	3 cut(s)	51, 136, 584
BseNI	ACTGG	2 cut(s)	242, 544
BseXI	GCAGC	5 cut(s)	355, 366, 374, 377, 601
Bsh1236I	CGCG	1 cut(s)	680
BshFI	GGCC	1 cut(s)	43
BsiHKAI	GWGCWC	2 cut(s)	54, 123
BslI	CCNNNNNNNGG	2 cut(s)	475, 550
BsmAI	GTCTC	1 cut(s)	670
BsnI	GGCC	1 cut(s)	43
Bso31I	GGTCTC	1 cut(s)	670
Bsp1286I	GDGCHC	2 cut(s)	54, 123
Bsp143I	GATC	2 cut(s)	10, 559
Bsp1720I	GCTNAGC	1 cut(s)	593
Bsp19I	CCATGG	1 cut(s)	325
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	3 cut(s)	50, 135, 585
BspFNI	CGCG	1 cut(s)	680
BspTNI	GGTCTC	1 cut(s)	670
BsrDI	GCAATG	1 cut(s)	357
BsrI	ACTGG	2 cut(s)	242, 544
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	2 cut(s)	10, 559
BssNAI	GTATAC	1 cut(s)	549
BssT1I	CCWWGG	1 cut(s)	325
Bst1107I	GTATAC	1 cut(s)	549
Bst4CI	ACNGT	4 cut(s)	220, 385, 412, 553
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	379
BstDEI	CTNAG	3 cut(s)	37, 122, 593
BstDSI	CCRYGG	1 cut(s)	325
BstENI	CCTNNNNNAGG	1 cut(s)	473
BstF5I	GGATG	1 cut(s)	429
BstFNI	CGCG	1 cut(s)	680
BstKTI	GATC	2 cut(s)	13, 562
BstMAI	GTCTC	1 cut(s)	670
BstMBI	GATC	2 cut(s)	10, 559
BstMWI	GCNNNNNNNGC	6 cut(s)	49, 194, 368, 374, 635, 644
BstSFI	CTRYAG	1 cut(s)	21
BstUI	CGCG	1 cut(s)	680
BstV1I	GCAGC	5 cut(s)	355, 366, 374, 377, 601
BstV2I	GAAGAC	1 cut(s)	470
BstZ17I	GTATAC	1 cut(s)	549
Bsu36I	CCTNAGG	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	400
BsuRI	GGCC	1 cut(s)	43
BtgI	CCRYGG	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	429
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	379
CaiI	CAGNNNCTG	2 cut(s)	368, 371
Cfr13I	GGNCC	1 cut(s)	41
CseI	GACGC	2 cut(s)	51, 669
Csp6I	GTAC	6 cut(s)	75, 138, 299, 331, 455, 609
CviAII	CATG	2 cut(s)	230, 326
CviQI	GTAC	6 cut(s)	75, 138, 299, 331, 455, 609
DdeI	CTNAG	3 cut(s)	37, 122, 593
DpnI	GATC	2 cut(s)	12, 561
DpnII	GATC	2 cut(s)	10, 559
Ecl136II	GAGCTC	2 cut(s)	52, 121
Eco130I	CCWWGG	1 cut(s)	325
Eco24I	GRGCYC	2 cut(s)	54, 123
Eco31I	GGTCTC	1 cut(s)	670
Eco53kI	GAGCTC	2 cut(s)	52, 121
Eco57I	CTGAAG	2 cut(s)	131, 587
Eco81I	CCTNAGG	1 cut(s)	37
EcoICRI	GAGCTC	2 cut(s)	52, 121
EcoNI	CCTNNNNNAGG	1 cut(s)	473
EcoT14I	CCWWGG	1 cut(s)	325
EcoT38I	GRGCYC	2 cut(s)	54, 123
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	2 cut(s)	233, 329
FaiI	YATR	6 cut(s)	168, 231, 327, 389, 512, 549
FatI	CATG	2 cut(s)	229, 325
FbaI	TGATCA	1 cut(s)	559
FblI	GTMKAC	1 cut(s)	548
Fnu4HI	GCNGC	5 cut(s)	355, 363, 366, 369, 590
FokI	GGATG	1 cut(s)	436
FriOI	GRGCYC	2 cut(s)	54, 123
Fsp4HI	GCNGC	5 cut(s)	355, 363, 366, 369, 590
GluI	GCNGC	5 cut(s)	355, 363, 366, 369, 590
GsuI	CTGGAG	2 cut(s)	393, 606
HaeIII	GGCC	1 cut(s)	43
HgaI	GACGC	2 cut(s)	51, 669
Hin1II	CATG	2 cut(s)	233, 329
HinfI	GANTC	3 cut(s)	17, 126, 614
HphI	GGTGA	1 cut(s)	57
Hpy166II	GTNNAC	1 cut(s)	549
Hpy188I	TCNGA	4 cut(s)	118, 125, 262, 475
Hpy188III	TCNNGA	3 cut(s)	14, 460, 623
Hpy8I	GTNNAC	1 cut(s)	549
HpyCH4III	ACNGT	4 cut(s)	220, 385, 412, 553
HpyCH4IV	ACGT	1 cut(s)	692
HpyCH4V	TGCA	7 cut(s)	92, 197, 233, 354, 362, 381, 427
HpyF10VI	GCNNNNNNNGC	6 cut(s)	49, 194, 368, 374, 635, 644
HpyF3I	CTNAG	3 cut(s)	37, 122, 593
HpySE526I	ACGT	1 cut(s)	692
Hsp92II	CATG	2 cut(s)	233, 329
Ksp22I	TGATCA	1 cut(s)	559
Kzo9I	GATC	2 cut(s)	10, 559
LmnI	GCTCC	2 cut(s)	49, 374
Lsp1109I	GCAGC	5 cut(s)	355, 366, 374, 377, 601
LweI	GCATC	1 cut(s)	414
MaeII	ACGT	1 cut(s)	692
MaeIII	GTNAC	3 cut(s)	63, 214, 391
MalI	GATC	2 cut(s)	12, 561
MboI	GATC	2 cut(s)	10, 559
MboII	GAAGA	1 cut(s)	475
MhlI	GDGCHC	2 cut(s)	54, 123
MluCI	AATT	5 cut(s)	145, 192, 199, 222, 279
MlyI	GAGTC	1 cut(s)	623
MnlI	CCTC	3 cut(s)	22, 46, 469
MspA1I	CMGCKG	3 cut(s)	368, 565, 592
MvnI	CGCG	1 cut(s)	680
MwoI	GCNNNNNNNGC	6 cut(s)	49, 194, 368, 374, 635, 644
NcoI	CCATGG	1 cut(s)	325
NdeII	GATC	2 cut(s)	10, 559
NlaIII	CATG	2 cut(s)	233, 329
NmuCI	GTSAC	3 cut(s)	63, 214, 391
PfeI	GAWTC	2 cut(s)	17, 126
PflFI	GACNNNGTC	1 cut(s)	469
PkrI	GCNGC	5 cut(s)	356, 364, 367, 370, 591
PleI	GAGTC	1 cut(s)	622
PpsI	GAGTC	1 cut(s)	622
Psp124BI	GAGCTC	2 cut(s)	54, 123
PspPI	GGNCC	1 cut(s)	41
PsrI	GAACNNNNNNTAC	2 cut(s)	162, 194
PstNI	CAGNNNCTG	2 cut(s)	368, 371
PsyI	GACNNNGTC	1 cut(s)	469
PvuII	CAGCTG	3 cut(s)	368, 565, 592
RsaI	GTAC	6 cut(s)	76, 139, 300, 332, 456, 610
RsaNI	GTAC	6 cut(s)	75, 138, 299, 331, 455, 609
SacI	GAGCTC	2 cut(s)	54, 123
SatI	GCNGC	5 cut(s)	355, 363, 366, 369, 590
Sau3AI	GATC	2 cut(s)	10, 559
Sau96I	GGNCC	1 cut(s)	41
ScaI	AGTACT	1 cut(s)	456
SchI	GAGTC	1 cut(s)	623
SduI	GDGCHC	2 cut(s)	54, 123
SfaNI	GCATC	1 cut(s)	414
SfcI	CTRYAG	1 cut(s)	21
Sse9I	AATT	5 cut(s)	145, 192, 199, 222, 279
SstI	GAGCTC	2 cut(s)	54, 123
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	4 cut(s)	220, 385, 412, 553
TaiI	ACGT	1 cut(s)	695
TasI	AATT	5 cut(s)	145, 192, 199, 222, 279
TatI	WGTACW	3 cut(s)	137, 298, 454
TfiI	GAWTC	2 cut(s)	17, 126
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	3 cut(s)	63, 214, 391
TseI	GCWGC	5 cut(s)	354, 362, 365, 368, 589
Tsp45I	GTSAC	3 cut(s)	63, 214, 391
TspRI	CASTG	1 cut(s)	223
Tth111I	GACNNNGTC	1 cut(s)	469
XagI	CCTNNNNNAGG	1 cut(s)	473
XapI	RAATTY	1 cut(s)	199
XcmI	CCANNNNNNNNNTGG	1 cut(s)	51
XmiI	GTMKAC	1 cut(s)	548
ZrmI	AGTACT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.