pycom16g11160

Glycine--tRNA ligase 1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
7756814 .. 7758531
1718 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g11160.2

Sequence Viewer

Length: 1005 bp
ATGGCCGCCCCGGAAGATTCGCTCCGTAAGGCTCTCGCCGACAAGCAGTCGGAGGTTGAAAGCCAGGGGAGCCAAGTGCGGGCTTTGAAGGACCGCAAGGCTGACAAGTCGGAACTTGACGCCGCCATTGCAGCTCTGAATGCGCTCAAGCTGGAGAAAGCTTCGATCGAGAAGGACCTCCAGGCCACATTGAGCAGCGGCGAAGGGTCCGGTAACAAGGAGGCGTTCCGTCAGGCGGTGTCGAATACGCTTGAACGGCGTCTCTTCTACATCAAGTCTTTCAACATCTACGGTGGCGTTGCGGGATTGTATGACTACGGTCCGCCCGGTTGCGCCGTCAAGTCCAATGTGCTAGCTTTTTGGCGGCAGCATTTTGTTCTTGAGGAGAACATGCTGGAAGTTGACTGCCCCTGTGTTACACCCGAGGTGGTTCTGAAGGCATCTGGCCATGTCGAAAAATTCACTGATCTTATGGTGAAAGACGAGAAAACTGGGACTTGCTACCGAGCGGATCACTTGCTGAAGGATTTTTGTAATGATAAGCTTCAAAAGGATCTCAACATTACTGCAGAGAAGGCCAAGGAGCTTAAACATATACTTGCGGTGTTGGATGATCTCTCACCTGAAGATCTAGGTGCAAAGATTAAGGAGTTTGGTATTACTGCCCCTGACACGAAGAATCCTCTATCTGATCCTTATCCTTTCAACCTGATGTTTCAAACTTCAATTGGTCCATCTGGCTTGATCCCTGGGTATTTGCGTCCAGAAACTGCCCAAGGCATATTTGTGAATTTTAAGGATCTGTATTATTACAATGGCAACAAACTTCCTTTTGCTGCAGCTCAAATTGGGCAGGCCTTTAGAAATGAGATATCTCCTCGCCAAGGCCTTCTGAGAGTTCGGGAATTTACACTGGCAGAGATTGAGCATTTTGATAGATCCCGAAGACAAATCTCACCCAAAGTTCACAGAGGTTGCAGAGTTGGAGTTTTTGATGTTCCCTAG

Protein Analysis

335

Amino Acids

37.17

Weight (kDa)

6.62

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 509
AclWI GGATC 6 cut(s) 519, 561, 686, 739, 807, 933
AcoI YGGCCR 2 cut(s) 3, 445
AcsI RAATTY 3 cut(s) 458, 790, 905
AcuI CTGAAG 3 cut(s) 455, 542, 645
AcyI GRCGYC 2 cut(s) 120, 259
AfiI CCNNNNNNNGG 3 cut(s) 79, 235, 884
AgsI TTSAA 8 cut(s) 59, 88, 254, 283, 548, 706, 719, 726
AhdI GACNNNNNGTC 1 cut(s) 46
AjnI CCWGG 3 cut(s) 63, 180, 748
AluBI AGCT 7 cut(s) 134, 151, 161, 356, 544, 586, 842
AluI AGCT 7 cut(s) 134, 151, 161, 356, 544, 586, 842
Alw26I GTCTC 1 cut(s) 266
AlwI GGATC 6 cut(s) 519, 561, 686, 739, 807, 933
AlwNI CAGNNNCTG 1 cut(s) 770
Ama87I CYCGRG 1 cut(s) 422
AoxI GGCC 6 cut(s) 3, 183, 445, 576, 855, 886
ApeKI GCWGC 5 cut(s) 131, 195, 367, 836, 839
ApoI RAATTY 3 cut(s) 458, 790, 905
AspLEI GCGC 2 cut(s) 145, 335
AspS9I GGNCC 5 cut(s) 91, 175, 207, 320, 731
AsuC2I CCSGG 2 cut(s) 11, 327
AsuHPI GGTGA 3 cut(s) 487, 612, 948
AsuNHI GCTAGC 1 cut(s) 352
AvaI CYCGRG 1 cut(s) 422
AvaII GGWCC 5 cut(s) 91, 175, 207, 320, 731
BalI TGGCCA 1 cut(s) 447
BbsI GAAGAC 1 cut(s) 952
BbvI GCAGC 5 cut(s) 143, 207, 379, 823, 851
BccI CCATC 1 cut(s) 742
BceAI ACGGC 2 cut(s) 272, 320
BciT130I CCWGG 3 cut(s) 65, 182, 750
BcnI CCSGG 2 cut(s) 11, 327
BcoDI GTCTC 1 cut(s) 266
BfaI CTAG 3 cut(s) 353, 632, 1003
BfmI CTRYAG 2 cut(s) 567, 837
BglII AGATCT 1 cut(s) 628
BisI GCNGC 9 cut(s) 6, 123, 132, 196, 199, 365, 368, 837, 840
BlsI GCNGC 9 cut(s) 7, 124, 133, 197, 200, 366, 369, 838, 841
Bme1390I CCNGG 5 cut(s) 11, 65, 182, 327, 750
Bme18I GGWCC 5 cut(s) 91, 175, 207, 320, 731
BmeRI GACNNNNNGTC 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 422
BmgT120I GGNCC 5 cut(s) 91, 175, 207, 320, 731
BmiI GGNNCC 2 cut(s) 71, 208
BmrFI CCNGG 5 cut(s) 11, 65, 182, 327, 750
BmrI ACTGGG 1 cut(s) 501
BmsI GCATC 1 cut(s) 449
BmtI GCTAGC 1 cut(s) 356
BmuI ACTGGG 1 cut(s) 501
BoxI GACNNNNGTC 1 cut(s) 318
BpiI GAAGAC 1 cut(s) 952
BpmI CTGGAG 2 cut(s) 164, 173
BpuEI CTTGAG 2 cut(s) 131, 401
BpuMI CCSGG 2 cut(s) 11, 327
BsaBI GATNNNNATC 1 cut(s) 696
BsaHI GRCGYC 2 cut(s) 120, 259
BsaJI CCNNGG 8 cut(s) 9, 64, 423, 579, 748, 749, 775, 883
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 235, 884
Bse1I ACTGG 2 cut(s) 496, 918
Bse3DI GCAATG 1 cut(s) 126
Bse8I GATNNNNATC 1 cut(s) 696
BseBI CCWGG 3 cut(s) 65, 182, 750
BseDI CCNNGG 8 cut(s) 9, 64, 423, 579, 748, 749, 775, 883
BseGI GGATG 1 cut(s) 616
BseJI GATNNNNATC 1 cut(s) 696
BseLI CCNNNNNNNGG 3 cut(s) 79, 235, 884
BseMI GCAATG 1 cut(s) 126
BseMII CTCAG 1 cut(s) 884
BseNI ACTGG 2 cut(s) 496, 918
BseRI GAGGAG 2 cut(s) 398, 867
BseXI GCAGC 5 cut(s) 143, 207, 379, 823, 851
Bsh1285I CGRYCG 1 cut(s) 168
BshFI GGCC 6 cut(s) 5, 185, 447, 578, 857, 888
BsiEI CGRYCG 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 422
BsiSI CCGG 3 cut(s) 11, 210, 327
BslFI GGGAC 1 cut(s) 508
BslI CCNNNNNNNGG 3 cut(s) 79, 235, 884
BsmAI GTCTC 1 cut(s) 266
BsmBI CGTCTC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 508
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 6 cut(s) 5, 185, 447, 578, 857, 888
BsoBI CYCGRG 1 cut(s) 422
BspANI GGCC 6 cut(s) 5, 185, 447, 578, 857, 888
BspCNI CTCAG 1 cut(s) 885
BspLI GGNNCC 2 cut(s) 71, 208
BspMAI CTGCAG 2 cut(s) 571, 841
BspOI GCTAGC 1 cut(s) 356
BspPI GGATC 6 cut(s) 519, 561, 686, 739, 807, 933
BsrBI CCGCTC 1 cut(s) 509
BsrDI GCAATG 1 cut(s) 126
BsrI ACTGG 2 cut(s) 496, 918
BssECI CCNNGG 8 cut(s) 9, 64, 423, 579, 748, 749, 775, 883
BssNI GRCGYC 2 cut(s) 120, 259
BssT1I CCWWGG 3 cut(s) 579, 775, 883
Bst2UI CCWGG 3 cut(s) 65, 182, 750
Bst4CI ACNGT 2 cut(s) 293, 320
Bst6I CTCTTC 1 cut(s) 269
BstACI GRCGYC 2 cut(s) 120, 259
BstC8I GCNNGC 3 cut(s) 81, 354, 855
BstDEI CTNAG 1 cut(s) 893
BstENI CCTNNNNNAGG 1 cut(s) 882
BstF5I GGATG 1 cut(s) 616
BstHHI GCGC 2 cut(s) 145, 335
BstMAI GTCTC 1 cut(s) 266
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 6 cut(s) 69, 128, 131, 140, 256, 575
BstNI CCWGG 3 cut(s) 65, 182, 750
BstNSI RCATGY 1 cut(s) 394
BstPAI GACNNNNGTC 1 cut(s) 318
BstSCI CCNGG 5 cut(s) 9, 63, 180, 325, 748
BstSFI CTRYAG 2 cut(s) 567, 837
BstV1I GCAGC 5 cut(s) 143, 207, 379, 823, 851
BstV2I GAAGAC 1 cut(s) 952
BstX2I RGATCY 4 cut(s) 553, 628, 799, 938
BstYI RGATCY 4 cut(s) 553, 628, 799, 938
BsuRI GGCC 6 cut(s) 5, 185, 447, 578, 857, 888
BtsCI GGATG 1 cut(s) 616
BtsIMutI CAGTG 2 cut(s) 462, 911
Cac8I GCNNGC 3 cut(s) 81, 354, 855
CaiI CAGNNNCTG 1 cut(s) 770
CfoI GCGC 2 cut(s) 145, 335
Cfr13I GGNCC 5 cut(s) 91, 175, 207, 320, 731
CpoI CGGWCCG 1 cut(s) 320
CseI GACGC 3 cut(s) 128, 248, 749
CspI CGGWCCG 1 cut(s) 320
CviAII CATG 2 cut(s) 391, 449
DdeI CTNAG 1 cut(s) 893
DriI GACNNNNNGTC 1 cut(s) 46
EaeI YGGCCR 2 cut(s) 3, 445
Eam1104I CTCTTC 1 cut(s) 269
Eam1105I GACNNNNNGTC 1 cut(s) 46
EarI CTCTTC 1 cut(s) 269
EciI GGCGGA 1 cut(s) 312
Eco130I CCWWGG 3 cut(s) 579, 775, 883
Eco147I AGGCCT 2 cut(s) 857, 888
Eco32I GATATC 1 cut(s) 873
Eco47I GGWCC 5 cut(s) 91, 175, 207, 320, 731
Eco57I CTGAAG 3 cut(s) 455, 542, 645
Eco88I CYCGRG 1 cut(s) 422
EcoNI CCTNNNNNAGG 1 cut(s) 882
EcoO109I RGGNCCY 1 cut(s) 175
EcoRII CCWGG 3 cut(s) 63, 180, 748
EcoRV GATATC 1 cut(s) 873
EcoT14I CCWWGG 3 cut(s) 579, 775, 883
ErhI CCWWGG 3 cut(s) 579, 775, 883
Esp3I CGTCTC 1 cut(s) 266
FaeI CATG 2 cut(s) 394, 452
FaiI YATR 7 cut(s) 312, 392, 450, 473, 594, 596, 782
FaqI GGGAC 1 cut(s) 508
FatI CATG 2 cut(s) 390, 448
FauI CCCGC 2 cut(s) 72, 295
Fnu4HI GCNGC 9 cut(s) 6, 123, 132, 196, 199, 365, 368, 837, 840
FokI GGATG 1 cut(s) 623
Fsp4HI GCNGC 9 cut(s) 6, 123, 132, 196, 199, 365, 368, 837, 840
FspBI CTAG 3 cut(s) 353, 632, 1003
GlaI GCGC 2 cut(s) 144, 334
GluI GCNGC 9 cut(s) 6, 123, 132, 196, 199, 365, 368, 837, 840
GsuI CTGGAG 2 cut(s) 164, 173
HaeIII GGCC 6 cut(s) 5, 185, 447, 578, 857, 888
HapII CCGG 3 cut(s) 11, 210, 327
HgaI GACGC 3 cut(s) 128, 248, 749
HhaI GCGC 2 cut(s) 145, 335
Hin1I GRCGYC 2 cut(s) 120, 259
Hin1II CATG 2 cut(s) 394, 452
Hin6I GCGC 2 cut(s) 143, 333
HinP1I GCGC 2 cut(s) 143, 333
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HindIII AAGCTT 2 cut(s) 159, 542
HinfI GANTC 2 cut(s) 17, 679
HpaII CCGG 3 cut(s) 11, 210, 327
HphI GGTGA 3 cut(s) 487, 612, 948
Hpy166II GTNNAC 2 cut(s) 403, 967
Hpy188I TCNGA 6 cut(s) 52, 112, 138, 435, 691, 894
Hpy188III TCNNGA 5 cut(s) 169, 380, 764, 902, 942
Hpy8I GTNNAC 2 cut(s) 403, 967
HpyAV CCTTC 7 cut(s) 82, 166, 197, 430, 517, 568, 899
HpyCH4III ACNGT 2 cut(s) 293, 320
HpyCH4V TGCA 5 cut(s) 131, 569, 638, 839, 978
HpyF10VI GCNNNNNNNGC 6 cut(s) 69, 128, 131, 140, 256, 575
HpyF3I CTNAG 1 cut(s) 893
Hsp92I GRCGYC 2 cut(s) 120, 259
Hsp92II CATG 2 cut(s) 394, 452
HspAI GCGC 2 cut(s) 143, 333
LmnI GCTCC 3 cut(s) 27, 69, 583
Lsp1109I GCAGC 5 cut(s) 143, 207, 379, 823, 851
LweI GCATC 1 cut(s) 449
MaeI CTAG 3 cut(s) 353, 632, 1003
MaeIII GTNAC 2 cut(s) 212, 415
MbiI CCGCTC 1 cut(s) 509
MboII GAAGA 5 cut(s) 26, 256, 638, 688, 957
MfeI CAATTG 1 cut(s) 726
MflI RGATCY 4 cut(s) 553, 628, 799, 938
MlsI TGGCCA 1 cut(s) 447
MluCI AATT 5 cut(s) 458, 726, 790, 846, 905
MluNI TGGCCA 1 cut(s) 447
MmeI TCCRAC 4 cut(s) 30, 90, 588, 964
MnlI CCTC 8 cut(s) 46, 188, 214, 376, 418, 693, 888, 965
Mox20I TGGCCA 1 cut(s) 447
MscI TGGCCA 1 cut(s) 447
MseI TTAA 3 cut(s) 588, 645, 795
MslI CAYNNNNRTG 1 cut(s) 785
Msp20I TGGCCA 1 cut(s) 447
MspA1I CMGCKG 1 cut(s) 198
MspI CCGG 3 cut(s) 11, 210, 327
MspR9I CCNGG 5 cut(s) 11, 65, 182, 327, 750
MunI CAATTG 1 cut(s) 726
Mva1269I GAATGC 1 cut(s) 145
MvaI CCWGG 3 cut(s) 65, 182, 750
MwoI GCNNNNNNNGC 6 cut(s) 69, 128, 131, 140, 256, 575
NciI CCSGG 2 cut(s) 11, 327
NheI GCTAGC 1 cut(s) 352
NlaIII CATG 2 cut(s) 394, 452
NlaIV GGNNCC 2 cut(s) 71, 208
NspI RCATGY 1 cut(s) 394
PasI CCCWGGG 1 cut(s) 749
PceI AGGCCT 2 cut(s) 857, 888
PctI GAATGC 1 cut(s) 145
PfeI GAWTC 2 cut(s) 17, 679
PkrI GCNGC 9 cut(s) 7, 124, 133, 197, 200, 366, 369, 838, 841
Ple19I CGATCG 1 cut(s) 168
PpuMI RGGWCCY 1 cut(s) 175
PshAI GACNNNNGTC 1 cut(s) 318
Psp5II RGGWCCY 1 cut(s) 175
Psp6I CCWGG 3 cut(s) 63, 180, 748
PspGI CCWGG 3 cut(s) 63, 180, 748
PspN4I GGNNCC 2 cut(s) 71, 208
PspPI GGNCC 5 cut(s) 91, 175, 207, 320, 731
PspPPI RGGWCCY 1 cut(s) 175
PstI CTGCAG 2 cut(s) 571, 841
PstNI CAGNNNCTG 1 cut(s) 770
PsuI RGATCY 4 cut(s) 553, 628, 799, 938
PvuI CGATCG 1 cut(s) 168
RseI CAYNNNNRTG 1 cut(s) 785
Rsr2I CGGWCCG 1 cut(s) 320
RsrII CGGWCCG 1 cut(s) 320
SaqAI TTAA 3 cut(s) 588, 645, 795
SatI GCNGC 9 cut(s) 6, 123, 132, 196, 199, 365, 368, 837, 840
Sau96I GGNCC 5 cut(s) 91, 175, 207, 320, 731
ScrFI CCNGG 5 cut(s) 11, 65, 182, 327, 750
SfaNI GCATC 1 cut(s) 449
SfcI CTRYAG 2 cut(s) 567, 837
SinI GGWCC 5 cut(s) 91, 175, 207, 320, 731
SmiMI CAYNNNNRTG 1 cut(s) 785
SmlI CTYRAG 2 cut(s) 146, 380
SmoI CTYRAG 2 cut(s) 146, 380
Sse9I AATT 5 cut(s) 458, 726, 790, 846, 905
SseBI AGGCCT 2 cut(s) 857, 888
SspMI CTAG 3 cut(s) 353, 632, 1003
StuI AGGCCT 2 cut(s) 857, 888
StyD4I CCNGG 5 cut(s) 9, 63, 180, 325, 748
StyI CCWWGG 3 cut(s) 579, 775, 883
TaaI ACNGT 2 cut(s) 293, 320
TaqI TCGA 4 cut(s) 164, 168, 242, 453
TasI AATT 5 cut(s) 458, 726, 790, 846, 905
TauI GCSGC 4 cut(s) 8, 125, 201, 367
TfiI GAWTC 2 cut(s) 17, 679
Tru1I TTAA 3 cut(s) 588, 645, 795
Tru9I TTAA 3 cut(s) 588, 645, 795
TscAI CASTG 2 cut(s) 469, 918
TseI GCWGC 5 cut(s) 131, 195, 367, 836, 839
TspGWI ACGGA 2 cut(s) 14, 218
TspRI CASTG 2 cut(s) 469, 918
VpaK11BI GGWCC 5 cut(s) 91, 175, 207, 320, 731
XagI CCTNNNNNAGG 1 cut(s) 882
XapI RAATTY 3 cut(s) 458, 790, 905
XceI RCATGY 1 cut(s) 394
XspI CTAG 3 cut(s) 353, 632, 1003
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.