Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001310

Physical Location & Seq

Genomic Coordinates Reverse (-)

46427647 .. 46432056

Gene Structure 4410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG292200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2202 bp

ATGCGCATCCTCACTTTCCTAACCTCATCGATACCAATTGGCCACAGTTTCTTCACTCGCGTCACTCACTCCTCATCGTCTCTACCTATCCGCTTCAGAACCATCGCCACCATGGCCGCTTCTTCCTCCTCCGAGGACTCGCTCCGCAAAGCCCTCTCCGAGAAGCTCTCGGAGGTCGAGAGCCAGGGCAACCAGGTCCGTTCTCTGAAGAAATCCGGCGCCACCAAGACGGAACTTGACGCCGCCATTGAGGCCTTGAACGCGCTCAAGCTTGAGAAGGCGTCGATCGAGAAAGACCTCCAAGCCACCATCAGCGGCGGCGACGGCGGCTCCGTTAACAAGGAGGCGTTACGTCAGGCTGTGGTGAATACTCTGGAGCGCCGTTTGTTTTATATTCCCGCTTTCAAGATTTACGGCGGCGTTGCTGGCCTCTACGATTACGGCCCTCCTGGTTGCGCCGTCAAGTCCAATGTCCTAGGGTTTTGGCGTCAGCATTTTGTGCTTGAAGAGAACATGTTGGAAGTTGACTGCCCTTGTGTCACACCTGAGGTTGTTTTGAAAGCATCGGGTCATGTGGAGAAATTCACCGATCTTATGGTTAAGGATGAGGCGTCTGGGATGTGCTACAGAGCTGATCACCTACTCAAGGATCACTGTAAAGATAAGCTTGAAAAGGACCTCAGAATTACTTCAGAGATGGCAATGGAACTGAAAGAAGTACTTTCAAAATTAGATGTCCTCTCCGCTGAAGAGCTGGGTGCATGTATAAAGAAATATGGTATTACAGCCCCTGACACAAAGAACACTCTCTCGGATCCTTATCCATTCAACCTGATGTTTCAAACATCAATTGGTCCTTCTGGTGTGAGCACCGGGTATATGCGTCCAGAAACTGCCCAAGGCATATTTGTGAATTTTAGGGACTTGTACTATTACAATGGGAACAAACTCCCTTTTGCTGCAGCCCAAATTGGCCAGGCTTTTAGAAATGAGATATCTCCTCGCCAAGGTCTTTTGAGAGTCCGTGAGTTTACACTTGCAGAGATTGAGCACTTCGTTGACCCCGAAGACAAATCTCACCCAAAATTCTCTGATGTTGCACATTTGGAGTTTCTGATGTTCCCAAGGGATGAACAGAAGCCTGGCCAGTCTGCAAGGATAATCTCACTAGGTGAAGCTGTATCTTCTAAGGATTCTAAAATTGTCGACAACGAAACCCTTGGCTACTTTATTGGGAGAGTATACCTCTTCCTCACTCGTCTGGGCATAGACAAGAACCGGTTAAGGTTCCGGCAGCACCTTGCAAATGAAATGGCTCACTATGCCCAGGACTGTTGGGATGCTGAGATTGAGACTTCATATGGCTGGATTGAGTGCGTGGGTATTGCAGATAGATCTGCGTATGACTTGAAGGCTCATTCGGAGAAAAGTAGAGTTGATCTTGAGGCACAGGAAAAATATTCCGAACCAAGAGAAGTTGAGAAATTGGTTATATCTGCTGTAAAGAAAGCGATTGGTCTTGCTTTCAAGGGGGACCAAAAGAAAGTACTTGAAGCTTTGGAGGCCATGAAAGAAGAAGAAGCTTTGAAAATGAAGACTGATTTAGAGTCAAAAGGGGAGGTAGAGTTTTATGTCTGCACTCTAGAGAAGAAAGTATCTATTAATTCAAGTATGGTAACAATTTCAAAGGAGAAAAAGAAAGAACACCAGAGAGTATTCACGCCCTCGGTAATTGAGCCTTCTTTTGGCATCGGTCGGATAATATATTGCCTCTATGAGCACTCATACTACATGAGGCCAAGTAAAGATGGGAATGAACAGTTTAATGTGTTCCGTTTTCCCCCTCTTGTGGCACCCATCAAGTGCACAGTTTTCCCGTTGGTTCAGAAGCAAGAGTATGAGGAAGTTTCTAAAGTCATTTCCAAATCATTGACTGCATCTGGGATATCACATAAAATTGATATTACAGGTACCTCAATCGGGAAACGATACGCACGGACGGATGAACTGGGTGTACCATTTGCAATCACAGTTGATTCCGTATCTTCTGTGACAATCCGGGAACGAGACAGCAAGGATCAGATCCGGGTTGATGTGAGTGAGGCGGCGTCTGTTGTCAAGGATATAGCTGAGGGAGTGAGGACATGGGCGGATGTGTGGTCGGCTTTCCCACACCATTCTTCTGGCTCAGCAGACGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

733

Amino Acids

81.96

Weight (kDa)

6.17

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHEP-TRS	PF00458	57 - 100	3.1e-09	WHEP-TRS domain
tRNA-synt_2b	PF00587	293 - 594	2.5e-10	tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon	PF03129	621 - 708	1.7e-17	Anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29880
fragaria_vesca	FvH4_4g22441 FvH4_4g22450 FvH4_4g22450 FvH4_4g22610 FvH4_4g22610
malus_domestica	MD13G1131000.v1.1 MD13G1145800.v1.1 MD16G1141200.v1.1
prunus_persica	Prupe.1G214600_v2.0.a1
pyrus_communis	pycom13g11430 pycom13g12530 pycom16g11160 pycom16g11170
rosa_chinensis	RchiOBHm_Chr1g0361881 RchiOBHm_Chr4g0428711 RchiOBHm_Chr4g0428851
rosa_laevigata	RLG00000007120 RLG00000007133 RLG00000027689 RLG00000027690 RLG00000027694
rosa_multiflora	Rmu_co8208336.1_g000001 Rmu_co8210234.1_g000001 Rmu_sc0003316.1_g000006 Rmu_sc0008612.1_g000003 Rmu_sc0018216.1_g000001 Rmu_ssc0000124.1_g000013
rosa_roxburghii	Rroxscaffold_4G00294630 Rroxscaffold_5G00370530
rosa_rugosa	Rorug01G0292100 Rorug04G0227400 Rorug04G0227500 Rorug04G0229700
rosa_samantha	Rh1AG302800 Rh1BG265900 Rh1BG266000 Rh1CG284000 Rh1DG295900 Rh1DG296000 Rh4AG284700 Rh4AG284900 Rh4AG286400 Rh4BG290700 Rh4BG290900 Rh4BG292200 Rh4CG308200 Rh4DG288200 Rh4DG289400
rosa_wichuraiana	Rw0G020620 Rw1G026830 Rw4G024720 Rw4G024830 Rw7G040280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
Acc65I	GGTACC	1 cut(s)	1970
AccB1I	GGYRCC	3 cut(s)	218, 1852, 1970
AccI	GTMKAC	2 cut(s)	1206, 1242
AccII	CGCG	2 cut(s)	60, 263
AclWI	GGATC	5 cut(s)	657, 809, 822, 2077, 2085
AcoI	YGGCCR	4 cut(s)	40, 114, 973, 1144
AcsI	RAATTY	3 cut(s)	581, 913, 1085
AcuI	CTGAAG	4 cut(s)	79, 227, 675, 768
AcyI	GRCGYC	6 cut(s)	219, 240, 281, 487, 611, 2108
AdeI	CACNNNGTG	1 cut(s)	1172
AfaI	GTAC	5 cut(s)	720, 929, 1548, 1972, 2016
AfiI	CCNNNNNNNGG	5 cut(s)	646, 1007, 1745, 1849, 1980
AflIII	ACRYGT	1 cut(s)	513
AgeI	ACCGGT	1 cut(s)	1278
AjnI	CCWGG	6 cut(s)	183, 192, 448, 975, 1141, 1326
AluBI	AGCT	9 cut(s)	166, 271, 632, 667, 754, 1178, 1556, 1583, 2129
AluI	AGCT	9 cut(s)	166, 271, 632, 667, 754, 1178, 1556, 1583, 2129
Alw21I	GWGCWC	4 cut(s)	872, 1053, 1782, 1868
Alw26I	GTCTC	3 cut(s)	84, 1346, 2061
Alw44I	GTGCAC	1 cut(s)	1864
AlwI	GGATC	5 cut(s)	657, 809, 822, 2077, 2085
AlwNI	CAGNNNCTG	2 cut(s)	791, 893
AoxI	GGCC	9 cut(s)	40, 114, 252, 427, 442, 973, 1144, 1563, 1796
ApaLI	GTGCAC	1 cut(s)	1864
ApeKI	GCWGC	3 cut(s)	959, 962, 1294
ApoI	RAATTY	3 cut(s)	581, 913, 1085
AseI	ATTAAT	1 cut(s)	1662
AsiGI	ACCGGT	1 cut(s)	1278
Asp700I	GAANNNNTTC	1 cut(s)	688
Asp718I	GGTACC	1 cut(s)	1970
AspA2I	CCTAGG	1 cut(s)	475
AspLEI	GCGC	5 cut(s)	6, 221, 265, 381, 458
AspS9I	GGNCC	5 cut(s)	196, 443, 676, 854, 1534
AsuC2I	CCSGG	3 cut(s)	874, 2060, 2087
AsuHPI	GGTGA	5 cut(s)	376, 577, 629, 1070, 1184
AvaII	GGWCC	4 cut(s)	196, 676, 854, 1534
AvrII	CCTAGG	1 cut(s)	475
AxyI	CCTNAGG	1 cut(s)	546
BaeGI	GKGCMC	1 cut(s)	1868
BalI	TGGCCA	3 cut(s)	42, 975, 1146
BamHI	GGATCC	1 cut(s)	814
BanI	GGYRCC	3 cut(s)	218, 1852, 1970
BbsI	GAAGAC	2 cut(s)	1074, 1601
Bbv12I	GWGCWC	4 cut(s)	872, 1053, 1782, 1868
BbvCI	CCTCAGC	1 cut(s)	2130
BbvI	GCAGC	3 cut(s)	946, 974, 1306
BccI	CCATC	5 cut(s)	110, 317, 691, 1802, 1865
BceAI	ACGGC	5 cut(s)	340, 366, 430, 443, 457
BciT130I	CCWGG	6 cut(s)	185, 194, 450, 977, 1143, 1328
BclI	TGATCA	1 cut(s)	634
BcnI	CCSGG	3 cut(s)	874, 2060, 2087
BcoDI	GTCTC	3 cut(s)	84, 1346, 2061
BfaI	CTAG	3 cut(s)	476, 1169, 1643
BfmI	CTRYAG	2 cut(s)	625, 960
BfoI	RGCGCY	2 cut(s)	222, 382
BglI	GCCNNNNNGGC	2 cut(s)	113, 251
BglII	AGATCT	1 cut(s)	1394
BlnI	CCTAGG	1 cut(s)	475
BlpI	GCTNAGC	1 cut(s)	2188
BmcAI	AGTACT	2 cut(s)	720, 1548
Bme1390I	CCNGG	9 cut(s)	185, 194, 450, 874, 977, 1143, 1328, 2060, 2087
Bme18I	GGWCC	4 cut(s)	196, 676, 854, 1534
BmgT120I	GGNCC	5 cut(s)	196, 443, 676, 854, 1534
BmiI	GGNNCC	7 cut(s)	220, 331, 816, 1289, 1535, 1854, 1972
BmrFI	CCNGG	9 cut(s)	185, 194, 450, 874, 977, 1143, 1328, 2060, 2087
BmrI	ACTGGG	1 cut(s)	2018
BmsI	GCATC	5 cut(s)	15, 572, 1330, 1758, 1946
BmuI	ACTGGG	1 cut(s)	2018
BpiI	GAAGAC	2 cut(s)	1074, 1601
BplI	GAGNNNNNCTC	4 cut(s)	152, 184, 1230, 1262
BpmI	CTGGAG	1 cut(s)	395
Bpu10I	CCTNAGC	1 cut(s)	2130
Bpu1102I	GCTNAGC	1 cut(s)	2188
BpuEI	CTTGAG	4 cut(s)	251, 293, 629, 1463
BpuMI	CCSGG	3 cut(s)	874, 2060, 2087
Bsa29I	ATCGAT	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	819
BsaHI	GRCGYC	6 cut(s)	219, 240, 281, 487, 611, 2108
BsaWI	WCCGGW	1 cut(s)	1278
BsaXI	ACNNNNNCTCC	4 cut(s)	314, 344, 1610, 1640
Bsc4I	CCNNNNNNNGG	5 cut(s)	646, 1007, 1745, 1849, 1980
Bse118I	RCCGGY	1 cut(s)	1278
Bse1I	ACTGG	2 cut(s)	1147, 2013
Bse21I	CCTNAGG	1 cut(s)	546
Bse3DI	GCAATG	1 cut(s)	708
Bse8I	GATNNNNATC	1 cut(s)	819
BseBI	CCWGG	6 cut(s)	185, 194, 450, 977, 1143, 1328
BseCI	ATCGAT	1 cut(s)	29
BseGI	GGATG	7 cut(s)	6, 610, 624, 1135, 1345, 2008, 2158
BseJI	GATNNNNATC	1 cut(s)	819
BseLI	CCNNNNNNNGG	5 cut(s)	646, 1007, 1745, 1849, 1980
BseMI	GCAATG	1 cut(s)	708
BseMII	CTCAG	5 cut(s)	537, 694, 1335, 2121, 2202
BseNI	ACTGG	2 cut(s)	1147, 2013
BseRI	GAGGAG	3 cut(s)	61, 118, 990
BseSI	GKGCMC	1 cut(s)	1868
BseXI	GCAGC	3 cut(s)	946, 974, 1306
BseYI	CCCAGC	1 cut(s)	754
BsgI	GTGCAG	1 cut(s)	1621
Bsh1236I	CGCG	2 cut(s)	60, 263
Bsh1285I	CGRYCG	2 cut(s)	288, 1756
BshFI	GGCC	9 cut(s)	42, 116, 254, 429, 444, 975, 1146, 1565, 1798
BshNI	GGYRCC	3 cut(s)	218, 1852, 1970
BshTI	ACCGGT	1 cut(s)	1278
BshVI	ATCGAT	1 cut(s)	29
BsiEI	CGRYCG	2 cut(s)	288, 1756
BsiHKAI	GWGCWC	4 cut(s)	872, 1053, 1782, 1868
BsiSI	CCGG	6 cut(s)	216, 873, 1279, 1291, 2059, 2086
BslFI	GGGAC	2 cut(s)	935, 1547
BslI	CCNNNNNNNGG	5 cut(s)	646, 1007, 1745, 1849, 1980
BsmAI	GTCTC	3 cut(s)	84, 1346, 2061
BsmBI	CGTCTC	1 cut(s)	84
BsmFI	GGGAC	2 cut(s)	935, 1547
BsnI	GGCC	9 cut(s)	42, 116, 254, 429, 444, 975, 1146, 1565, 1798
Bsp1286I	GDGCHC	4 cut(s)	872, 1053, 1782, 1868
Bsp143I	GATC	9 cut(s)	285, 589, 634, 649, 814, 1394, 1438, 2077, 2082
Bsp1720I	GCTNAGC	1 cut(s)	2188
Bsp19I	CCATGG	1 cut(s)	111
BspANI	GGCC	9 cut(s)	42, 116, 254, 429, 444, 975, 1146, 1565, 1798
BspCNI	CTCAG	5 cut(s)	538, 693, 1336, 2122, 2201
BspDI	ATCGAT	1 cut(s)	29
BspFNI	CGCG	2 cut(s)	60, 263
BspLI	GGNNCC	7 cut(s)	220, 331, 816, 1289, 1535, 1854, 1972
BspMAI	CTGCAG	1 cut(s)	964
BspPI	GGATC	5 cut(s)	657, 809, 822, 2077, 2085
BspQI	GCTCTTC	1 cut(s)	744
BspT107I	GGYRCC	3 cut(s)	218, 1852, 1970
BsrDI	GCAATG	1 cut(s)	708
BsrFI	RCCGGY	1 cut(s)	1278
BsrI	ACTGG	2 cut(s)	1147, 2013
BssAI	RCCGGY	1 cut(s)	1278
BssMI	GATC	9 cut(s)	285, 589, 634, 649, 814, 1394, 1438, 2077, 2082
BssNAI	GTATAC	1 cut(s)	1243
BssNI	GRCGYC	6 cut(s)	219, 240, 281, 487, 611, 2108
BssT1I	CCWWGG	6 cut(s)	111, 475, 898, 1006, 1124, 1219
Bst1107I	GTATAC	1 cut(s)	1243
Bst2UI	CCWGG	6 cut(s)	185, 194, 450, 977, 1143, 1328
Bst4CI	ACNGT	6 cut(s)	47, 656, 1334, 1821, 1870, 2032
Bst6I	CTCTTC	3 cut(s)	501, 744, 1253
BstACI	GRCGYC	6 cut(s)	219, 240, 281, 487, 611, 2108
BstAPI	GCANNNNNTGC	1 cut(s)	499
BstC8I	GCNNGC	1 cut(s)	427
BstDEI	CTNAG	6 cut(s)	546, 680, 1188, 1344, 2130, 2188
BstDSI	CCRYGG	1 cut(s)	111
BstENI	CCTNNNNNAGG	2 cut(s)	644, 1005
BstF5I	GGATG	7 cut(s)	6, 610, 624, 1135, 1345, 2008, 2158
BstFNI	CGCG	2 cut(s)	60, 263
BstH2I	RGCGCY	2 cut(s)	222, 382
BstHHI	GCGC	5 cut(s)	6, 221, 265, 381, 458
BstKTI	GATC	9 cut(s)	288, 592, 637, 652, 817, 1397, 1441, 2080, 2085
BstMAI	GTCTC	3 cut(s)	84, 1346, 2061
BstMBI	GATC	9 cut(s)	285, 589, 634, 649, 814, 1394, 1438, 2077, 2082
BstMCI	CGRYCG	2 cut(s)	288, 1756
BstMWI	GCNNNNNNNGC	9 cut(s)	113, 251, 260, 324, 327, 426, 499, 1322, 1562
BstNI	CCWGG	6 cut(s)	185, 194, 450, 977, 1143, 1328
BstNSI	RCATGY	2 cut(s)	517, 765
BstSCI	CCNGG	9 cut(s)	183, 192, 448, 872, 975, 1141, 1326, 2058, 2085
BstSFI	CTRYAG	2 cut(s)	625, 960
BstSLI	GKGCMC	1 cut(s)	1868
BstUI	CGCG	2 cut(s)	60, 263
BstV1I	GCAGC	3 cut(s)	946, 974, 1306
BstV2I	GAAGAC	2 cut(s)	1074, 1601
BstX2I	RGATCY	3 cut(s)	814, 1394, 2082
BstXI	CCANNNNNNTGG	1 cut(s)	2183
BstYI	RGATCY	3 cut(s)	814, 1394, 2082
BstZ17I	GTATAC	1 cut(s)	1243
Bsu15I	ATCGAT	1 cut(s)	29
Bsu36I	CCTNAGG	1 cut(s)	546
BsuRI	GGCC	9 cut(s)	42, 116, 254, 429, 444, 975, 1146, 1565, 1798
BsuTUI	ATCGAT	1 cut(s)	29
BtgI	CCRYGG	1 cut(s)	111
BtgZI	GCGATG	1 cut(s)	88
BtsCI	GGATG	7 cut(s)	6, 610, 624, 1135, 1345, 2008, 2158
BtsIMutI	CAGTG	1 cut(s)	652
Cac8I	GCNNGC	1 cut(s)	427
CaiI	CAGNNNCTG	2 cut(s)	791, 893
CfoI	GCGC	5 cut(s)	6, 221, 265, 381, 458
Cfr10I	RCCGGY	1 cut(s)	1278
Cfr13I	GGNCC	5 cut(s)	196, 443, 676, 854, 1534
ClaI	ATCGAT	1 cut(s)	29
CseI	GACGC	7 cut(s)	49, 248, 270, 476, 600, 872, 2097
CsiI	ACCWGGT	1 cut(s)	192
Csp6I	GTAC	5 cut(s)	719, 928, 1547, 1971, 2015
CspAI	ACCGGT	1 cut(s)	1278
CviAII	CATG	7 cut(s)	112, 514, 572, 762, 1567, 1792, 2145
CviQI	GTAC	5 cut(s)	719, 928, 1547, 1971, 2015
DdeI	CTNAG	6 cut(s)	546, 680, 1188, 1344, 2130, 2188
DinI	GGCGCC	1 cut(s)	220
DpnI	GATC	9 cut(s)	287, 591, 636, 651, 816, 1396, 1440, 2079, 2084
DpnII	GATC	9 cut(s)	285, 589, 634, 649, 814, 1394, 1438, 2077, 2082
DraIII	CACNNNGTG	1 cut(s)	1172
EaeI	YGGCCR	4 cut(s)	40, 114, 973, 1144
Eam1104I	CTCTTC	3 cut(s)	501, 744, 1253
EarI	CTCTTC	3 cut(s)	501, 744, 1253
EciI	GGCGGA	1 cut(s)	2165
Eco130I	CCWWGG	6 cut(s)	111, 475, 898, 1006, 1124, 1219
Eco147I	AGGCCT	1 cut(s)	254
Eco32I	GATATC	2 cut(s)	996, 1947
Eco47I	GGWCC	4 cut(s)	196, 676, 854, 1534
Eco57I	CTGAAG	4 cut(s)	79, 227, 675, 768
Eco81I	CCTNAGG	1 cut(s)	546
EcoNI	CCTNNNNNAGG	2 cut(s)	644, 1005
EcoO109I	RGGNCCY	1 cut(s)	676
EcoRII	CCWGG	6 cut(s)	183, 192, 448, 975, 1141, 1326
EcoRV	GATATC	2 cut(s)	996, 1947
EcoT14I	CCWWGG	6 cut(s)	111, 475, 898, 1006, 1124, 1219
EgeI	GGCGCC	1 cut(s)	220
EheI	GGCGCC	1 cut(s)	220
ErhI	CCWWGG	6 cut(s)	111, 475, 898, 1006, 1124, 1219
Esp3I	CGTCTC	1 cut(s)	84
FaeI	CATG	7 cut(s)	115, 517, 575, 765, 1570, 1795, 2148
FalI	AAGNNNNNCTT	4 cut(s)	651, 683, 705, 737
FaqI	GGGAC	2 cut(s)	935, 1547
FatI	CATG	7 cut(s)	111, 513, 571, 761, 1566, 1791, 2144
FauI	CCCGC	1 cut(s)	406
FauNDI	CATATG	1 cut(s)	1360
FbaI	TGATCA	1 cut(s)	634
FblI	GTMKAC	2 cut(s)	1206, 1242
FokI	GGATG	6 cut(s)	617, 631, 1142, 1352, 2015, 2165
FspAI	RTGCGCAY	1 cut(s)	5
FspBI	CTAG	3 cut(s)	476, 1169, 1643
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	5 cut(s)	5, 220, 264, 380, 457
GsaI	CCCAGC	1 cut(s)	758
GsuI	CTGGAG	1 cut(s)	395
HaeII	RGCGCY	2 cut(s)	222, 382
HaeIII	GGCC	9 cut(s)	42, 116, 254, 429, 444, 975, 1146, 1565, 1798
HapII	CCGG	6 cut(s)	216, 873, 1279, 1291, 2059, 2086
HgaI	GACGC	7 cut(s)	49, 248, 270, 476, 600, 872, 2097
HhaI	GCGC	5 cut(s)	6, 221, 265, 381, 458
Hin1I	GRCGYC	6 cut(s)	219, 240, 281, 487, 611, 2108
Hin1II	CATG	7 cut(s)	115, 517, 575, 765, 1570, 1795, 2148
Hin6I	GCGC	5 cut(s)	4, 219, 263, 379, 456
HinP1I	GCGC	5 cut(s)	4, 219, 263, 379, 456
HincII	GTYRAC	4 cut(s)	337, 526, 1060, 1207
HindII	GTYRAC	4 cut(s)	337, 526, 1060, 1207
HindIII	AAGCTT	4 cut(s)	269, 665, 1554, 1581
HinfI	GANTC	5 cut(s)	137, 1020, 1193, 1607, 2036
HpaI	GTTAAC	1 cut(s)	337
HpaII	CCGG	6 cut(s)	216, 873, 1279, 1291, 2059, 2086
HphI	GGTGA	5 cut(s)	376, 577, 629, 1070, 1184
Hpy166II	GTNNAC	8 cut(s)	337, 526, 1032, 1060, 1207, 1243, 1866, 2015
Hpy188III	TCNNGA	8 cut(s)	178, 289, 374, 406, 887, 1442, 1643, 1981
Hpy8I	GTNNAC	8 cut(s)	337, 526, 1032, 1060, 1207, 1243, 1866, 2015
Hpy99I	CGWCG	2 cut(s)	286, 326
HpyAV	CCTTC	4 cut(s)	271, 867, 1405, 1749
HpyCH4III	ACNGT	6 cut(s)	47, 656, 1334, 1821, 1870, 2032
HpyCH4IV	ACGT	1 cut(s)	352
HpyF10VI	GCNNNNNNNGC	9 cut(s)	113, 251, 260, 324, 327, 426, 499, 1322, 1562
HpyF3I	CTNAG	6 cut(s)	546, 680, 1188, 1344, 2130, 2188
HpySE526I	ACGT	1 cut(s)	352
Hsp92I	GRCGYC	6 cut(s)	219, 240, 281, 487, 611, 2108
Hsp92II	CATG	7 cut(s)	115, 517, 575, 765, 1570, 1795, 2148
HspAI	GCGC	5 cut(s)	4, 219, 263, 379, 456
KasI	GGCGCC	1 cut(s)	218
KpnI	GGTACC	1 cut(s)	1974
Ksp22I	TGATCA	1 cut(s)	634
KspAI	GTTAAC	1 cut(s)	337
Kzo9I	GATC	9 cut(s)	285, 589, 634, 649, 814, 1394, 1438, 2077, 2082
LguI	GCTCTTC	1 cut(s)	744
LmnI	GCTCC	3 cut(s)	147, 335, 376
Lsp1109I	GCAGC	3 cut(s)	946, 974, 1306
LweI	GCATC	5 cut(s)	15, 572, 1330, 1758, 1946
MabI	ACCWGGT	1 cut(s)	192
MaeI	CTAG	3 cut(s)	476, 1169, 1643
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	5 cut(s)	61, 348, 538, 1675, 2050
MalI	GATC	9 cut(s)	287, 591, 636, 651, 816, 1396, 1440, 2079, 2084
MboI	GATC	9 cut(s)	285, 589, 634, 649, 814, 1394, 1438, 2077, 2082
MfeI	CAATTG	2 cut(s)	36, 849
MflI	RGATCY	3 cut(s)	814, 1394, 2082
MhlI	GDGCHC	4 cut(s)	872, 1053, 1782, 1868
MlsI	TGGCCA	3 cut(s)	42, 975, 1146
MluNI	TGGCCA	3 cut(s)	42, 975, 1146
Mly113I	GGCGCC	1 cut(s)	219
MlyI	GAGTC	3 cut(s)	131, 1029, 1616
MmeI	TCCRAC	2 cut(s)	498, 1736
Mox20I	TGGCCA	3 cut(s)	42, 975, 1146
MroXI	GAANNNNTTC	1 cut(s)	688
MscI	TGGCCA	3 cut(s)	42, 975, 1146
MseI	TTAA	5 cut(s)	336, 600, 1283, 1662, 1824
MslI	CAYNNNNRTG	1 cut(s)	908
Msp20I	TGGCCA	3 cut(s)	42, 975, 1146
MspA1I	CMGCKG	2 cut(s)	315, 746
MspI	CCGG	6 cut(s)	216, 873, 1279, 1291, 2059, 2086
MspR9I	CCNGG	9 cut(s)	185, 194, 450, 874, 977, 1143, 1328, 2060, 2087
MunI	CAATTG	2 cut(s)	36, 849
MvaI	CCWGG	6 cut(s)	185, 194, 450, 977, 1143, 1328
MvnI	CGCG	2 cut(s)	60, 263
MwoI	GCNNNNNNNGC	9 cut(s)	113, 251, 260, 324, 327, 426, 499, 1322, 1562
NarI	GGCGCC	1 cut(s)	219
NciI	CCSGG	3 cut(s)	874, 2060, 2087
NcoI	CCATGG	1 cut(s)	111
NdeI	CATATG	1 cut(s)	1360
NdeII	GATC	9 cut(s)	285, 589, 634, 649, 814, 1394, 1438, 2077, 2082
NlaIII	CATG	7 cut(s)	115, 517, 575, 765, 1570, 1795, 2148
NlaIV	GGNNCC	7 cut(s)	220, 331, 816, 1289, 1535, 1854, 1972
NmuCI	GTSAC	3 cut(s)	61, 538, 2050
NsbI	TGCGCA	1 cut(s)	5
NspI	RCATGY	2 cut(s)	517, 765
PceI	AGGCCT	1 cut(s)	254
PciI	ACATGT	1 cut(s)	513
PciSI	GCTCTTC	1 cut(s)	744
PcsI	WCGNNNNNNNCGW	2 cut(s)	330, 1062
PdmI	GAANNNNTTC	1 cut(s)	688
PfeI	GAWTC	2 cut(s)	1193, 2036
PfoI	TCCNGGA	1 cut(s)	2058
PinAI	ACCGGT	1 cut(s)	1278
Ple19I	CGATCG	1 cut(s)	288
PleI	GAGTC	3 cut(s)	131, 1028, 1615
PluTI	GGCGCC	1 cut(s)	222
PpsI	GAGTC	3 cut(s)	131, 1028, 1615
PpuMI	RGGWCCY	1 cut(s)	676
PscI	ACATGT	1 cut(s)	513
PshBI	ATTAAT	1 cut(s)	1662
Psp5II	RGGWCCY	1 cut(s)	676
Psp6I	CCWGG	6 cut(s)	183, 192, 448, 975, 1141, 1326
PspFI	CCCAGC	1 cut(s)	754
PspGI	CCWGG	6 cut(s)	183, 192, 448, 975, 1141, 1326
PspN4I	GGNNCC	7 cut(s)	220, 331, 816, 1289, 1535, 1854, 1972
PspPI	GGNCC	5 cut(s)	196, 443, 676, 854, 1534
PspPPI	RGGWCCY	1 cut(s)	676
PsrI	GAACNNNNNNTAC	2 cut(s)	1998, 2030
PstI	CTGCAG	1 cut(s)	964
PstNI	CAGNNNCTG	2 cut(s)	791, 893
PsuI	RGATCY	3 cut(s)	814, 1394, 2082
PvuI	CGATCG	1 cut(s)	288
RsaI	GTAC	5 cut(s)	720, 929, 1548, 1972, 2016
RsaNI	GTAC	5 cut(s)	719, 928, 1547, 1971, 2015
RseI	CAYNNNNRTG	1 cut(s)	908
SalI	GTCGAC	1 cut(s)	1205
SapI	GCTCTTC	1 cut(s)	744
SaqAI	TTAA	5 cut(s)	336, 600, 1283, 1662, 1824
Sau3AI	GATC	9 cut(s)	285, 589, 634, 649, 814, 1394, 1438, 2077, 2082
Sau96I	GGNCC	5 cut(s)	196, 443, 676, 854, 1534
ScaI	AGTACT	2 cut(s)	720, 1548
SchI	GAGTC	3 cut(s)	131, 1029, 1616
ScrFI	CCNGG	9 cut(s)	185, 194, 450, 874, 977, 1143, 1328, 2060, 2087
SduI	GDGCHC	4 cut(s)	872, 1053, 1782, 1868
SexAI	ACCWGGT	1 cut(s)	192
SfaNI	GCATC	5 cut(s)	15, 572, 1330, 1758, 1946
SfcI	CTRYAG	2 cut(s)	625, 960
SfoI	GGCGCC	1 cut(s)	220
SinI	GGWCC	4 cut(s)	196, 676, 854, 1534
SmiMI	CAYNNNNRTG	1 cut(s)	908
SmlI	CTYRAG	4 cut(s)	266, 272, 644, 1442
SmoI	CTYRAG	4 cut(s)	266, 272, 644, 1442
SseBI	AGGCCT	1 cut(s)	254
SspDI	GGCGCC	1 cut(s)	218
SspI	AATATT	1 cut(s)	1460
SspMI	CTAG	3 cut(s)	476, 1169, 1643
StuI	AGGCCT	1 cut(s)	254
StyD4I	CCNGG	9 cut(s)	183, 192, 448, 872, 975, 1141, 1326, 2058, 2085
StyI	CCWWGG	6 cut(s)	111, 475, 898, 1006, 1124, 1219
TaaI	ACNGT	6 cut(s)	47, 656, 1334, 1821, 1870, 2032
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	5 cut(s)	29, 177, 284, 288, 1206
TaqII	GACCGA	1 cut(s)	1742
TatI	WGTACW	3 cut(s)	718, 927, 1546
TauI	GCSGC	7 cut(s)	119, 245, 318, 321, 330, 420, 2108
TfiI	GAWTC	2 cut(s)	1193, 2036
Tru1I	TTAA	5 cut(s)	336, 600, 1283, 1662, 1824
Tru9I	TTAA	5 cut(s)	336, 600, 1283, 1662, 1824
TscAI	CASTG	1 cut(s)	659
TseFI	GTSAC	3 cut(s)	61, 538, 2050
TseI	GCWGC	3 cut(s)	959, 962, 1294
Tsp45I	GTSAC	3 cut(s)	61, 538, 2050
TspDTI	ATGAA	7 cut(s)	1146, 1323, 1347, 1583, 1607, 1830, 2019
TspGWI	ACGGA	8 cut(s)	188, 245, 322, 1013, 1823, 2011, 2015, 2029
TspRI	CASTG	1 cut(s)	659
VneI	GTGCAC	1 cut(s)	1864
VpaK11BI	GGWCC	4 cut(s)	196, 676, 854, 1534
VspI	ATTAAT	1 cut(s)	1662
XagI	CCTNNNNNAGG	2 cut(s)	644, 1005
XapI	RAATTY	3 cut(s)	581, 913, 1085
XbaI	TCTAGA	1 cut(s)	1642
XceI	RCATGY	2 cut(s)	517, 765
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XmaJI	CCTAGG	1 cut(s)	475
XmiI	GTMKAC	2 cut(s)	1206, 1242
XmnI	GAANNNNTTC	1 cut(s)	688
XspI	CTAG	3 cut(s)	476, 1169, 1643
ZrmI	AGTACT	2 cut(s)	720, 1548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.