Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001310

Physical Location & Seq

Genomic Coordinates Reverse (-)

56982907 .. 56986700

Gene Structure 3794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG308200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2148 bp

ATGCGCATCCTCACTTTCCTAACCTCATCGATACCAATTGGCCACACTTTCTTCACTCGTCTCACTCGCTCCTCATCGTCTCTACCTCTCCGCTTCAGAACCACCACCACCACCACCATGGCCCCTTCTTCCTCCTCCGAGGACTCCCTCCGCAAAGCCCTCTCCGAGAAGCTCTCGGAGGTCGAGAGCCAGGGCAACCAGGTCCGCTCTCTGAAGAAATCCGGCGCCGCCAAAACGGAACTTGACGCCGCCATTGAGGCCTTGAACGCGCTCAAGCTTGAGAAGGCGTCGATCGAGAAAGACCTCCAAGCCACCATCAGCGGCGACGACGGCGGCTCCGTTAACAAGGAGGCGTTACGTCAGGCTGTGGTGAATACTCTGGAGCGCCGTTTGTTTTATATTCCCGCTTTCAAGATTTACGGCGGCGTTGCTGGCCTCTACGACTACGGGCCTCCAGGTTGCGCCGTCAAGTCCAATGTCCTAGGGTTTTGGCGTCAGCATTTTGTGCTTGAAGAGAACATGTTGGAAGTTGACTGCCCTTGTGTCACACCTGAGGTGGTTTTGAAAGCATCGGGTCATGTGGAGAAATTCACCGATCTTATGGTTAAGGATGAGGCGTCTGGGATGTGCTACAGAGCTGATCACTTGCTCAAGGATTACTGTAAAGATAAGCTTGAAAAGGACCTCAGAATTACTTCAGAGATGGCAATGGAACTGAAAGAAGTACTTTCCAAATTAGATGTCCTCTCCGCTGAAGAGCTGGGTGCATGTATAAAGAAATATGGTATTACAGCCCCTGACACAAAGAACACTCTCTCGGATCCTTATCCATTCAATCTGATGTTTCAAACATCAATTGGTCCTTCTGGTGTGAGCACCGGGTATATGCGTCCAGAAACTGCCCAAGGCATATTTGTGAATTTTAGGGACTTGTACTATTACAATGGTAACAAACTCCCTTTTGCTGCAGCCCAAATTGGCCAGGCTTTTAGAAATGAGATATCACCTCGCCAAGGTCTTTTGAGAGTCCGTGAGTTTACACTTGCAGAGATTGAGCACTTTGTTGACCCCGAAGACAAATCTCACCCAAAATTCTCTGATGTTGCACATTTGGAGTTTCTGATGTTCCCAAGGGATGAACAGAAGCCTGGCCAGTCTGCAAGGATAATCTCACTAGGTGAAGCTGTATCTTCTAAGGATTCTAAAATTGTCGACAACGAAACCCTTGGCTACTTTATTGGGAGAGTATACCTCTTCCTTACTCATCTGGGTATAGACAAGAACCGTTTAAGGTTCCGGCAGCACCTTGCAAATGAAATGGCTCACTATGCCCAGGACTGTTGGGATGCTGAGATTGAGACTTCATATGGCTGGATTGAGTGCGTGGGTATTGCAGATAGATCTGCGTATGACTTGAAGGCTCATTCGAAATTGGTTATATCTCCTGTAAAGAAAGCGATTGGTCTTGCTTTCAAGGGGGACCAAAAGAAAGTACTTGAAGCTTTGGAGGCCATGAAAGAAGAAGAAGCTTTGAAAATGAAGACTGATTTAGAGTCAAAAGGGGAGGTAGAGTTTTATGTCTGCACTCTAGAGAAGAAAGTATCTATTAATTCAAGTATGGTAACAATTTCAAAGGAGAAAAAGAAAGAACACCAGAGAGTATTCACGCCCTCGGTAATTGAGCCTTCTTTTGGCATCGGTCGGATAATATATTGCCTCTATGAGCACTCATACTACATGAGGCCAAGTAAAGATGGGAATGAACAGTTTAATGTGTTCCGTTTCCCCCCTCTTGTGGCACCCATCAAGTGCACAGTTTTCCCGTTGGTTCAGAAGCAAGAGTATGAGGAAGTTTCTAAAGTCATTTCCAAATCACTGACTGCATCTGGGATATCACATAAAATTGACATCACAGGTACCTCAATTGGGAAACGATACGCACGGACTGATGAACTGGGTGTACCGTTTGCAATCACAGTTGATTCCGTATCTTCTGTGACAATCCGGGAACGAGACAGCAAGGATCAGATCCGGGTTGATGTGAGTGAGGCAGCGTCTGTTGTCAAGGATATAGCTGAGGGAGTGAGGACATGGGCGGATGTGTGGTCGGCTTTCCCACACCATTCTTCTGGCTCAGCAGACGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

715

Amino Acids

79.91

Weight (kDa)

6.3

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHEP-TRS	PF00458	59 - 102	2.8e-09	WHEP-TRS domain
tRNA-synt_2b	PF00587	295 - 576	1.7e-10	tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon	PF03129	603 - 690	1.6e-17	Anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29880
fragaria_vesca	FvH4_4g22441 FvH4_4g22450 FvH4_4g22450 FvH4_4g22610 FvH4_4g22610
malus_domestica	MD13G1131000.v1.1 MD13G1145800.v1.1 MD16G1141200.v1.1
prunus_persica	Prupe.1G214600_v2.0.a1
pyrus_communis	pycom13g11430 pycom13g12530 pycom16g11160 pycom16g11170
rosa_chinensis	RchiOBHm_Chr1g0361881 RchiOBHm_Chr4g0428711 RchiOBHm_Chr4g0428851
rosa_laevigata	RLG00000007120 RLG00000007133 RLG00000027689 RLG00000027690 RLG00000027694
rosa_multiflora	Rmu_co8208336.1_g000001 Rmu_co8210234.1_g000001 Rmu_sc0003316.1_g000006 Rmu_sc0008612.1_g000003 Rmu_sc0018216.1_g000001 Rmu_ssc0000124.1_g000013
rosa_roxburghii	Rroxscaffold_4G00294630 Rroxscaffold_5G00370530
rosa_rugosa	Rorug01G0292100 Rorug04G0227400 Rorug04G0227500 Rorug04G0229700
rosa_samantha	Rh1AG302800 Rh1BG265900 Rh1BG266000 Rh1CG284000 Rh1DG295900 Rh1DG296000 Rh4AG284700 Rh4AG284900 Rh4AG286400 Rh4BG290700 Rh4BG290900 Rh4BG292200 Rh4CG308200 Rh4DG288200 Rh4DG289400
rosa_wichuraiana	Rw0G020620 Rw1G026830 Rw4G024720 Rw4G024830 Rw7G040280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
Acc65I	GGTACC	1 cut(s)	1916
AccB1I	GGYRCC	3 cut(s)	224, 1798, 1916
AccBSI	CCGCTC	1 cut(s)	207
AccI	GTMKAC	2 cut(s)	1212, 1248
AccII	CGCG	1 cut(s)	269
AclWI	GGATC	4 cut(s)	815, 828, 2023, 2031
AcoI	YGGCCR	3 cut(s)	40, 979, 1150
AcsI	RAATTY	3 cut(s)	587, 919, 1091
AcuI	CTGAAG	4 cut(s)	79, 233, 681, 774
AcyI	GRCGYC	5 cut(s)	225, 246, 287, 493, 617
AdeI	CACNNNGTG	1 cut(s)	1178
AfaI	GTAC	5 cut(s)	726, 935, 1494, 1918, 1962
AfiI	CCNNNNNNNGG	4 cut(s)	1013, 1691, 1795, 1926
AflIII	ACRYGT	1 cut(s)	519
AjnI	CCWGG	6 cut(s)	189, 198, 454, 981, 1147, 1332
AluBI	AGCT	9 cut(s)	172, 277, 638, 673, 760, 1184, 1502, 1529, 2075
AluI	AGCT	9 cut(s)	172, 277, 638, 673, 760, 1184, 1502, 1529, 2075
Alw21I	GWGCWC	4 cut(s)	878, 1059, 1728, 1814
Alw26I	GTCTC	4 cut(s)	65, 84, 1352, 2007
Alw44I	GTGCAC	1 cut(s)	1810
AlwI	GGATC	4 cut(s)	815, 828, 2023, 2031
AlwNI	CAGNNNCTG	3 cut(s)	797, 899, 2057
AoxI	GGCC	9 cut(s)	40, 120, 258, 433, 449, 979, 1150, 1509, 1742
ApaLI	GTGCAC	1 cut(s)	1810
ApeKI	GCWGC	4 cut(s)	965, 968, 1300, 2051
ApoI	RAATTY	3 cut(s)	587, 919, 1091
ArsI	GACNNNNNNTTYG	2 cut(s)	726, 758
AseI	ATTAAT	1 cut(s)	1608
Asp700I	GAANNNNTTC	1 cut(s)	694
Asp718I	GGTACC	1 cut(s)	1916
AspA2I	CCTAGG	1 cut(s)	481
AspLEI	GCGC	5 cut(s)	6, 227, 271, 387, 464
AspS9I	GGNCC	6 cut(s)	121, 202, 449, 682, 860, 1480
AsuC2I	CCSGG	3 cut(s)	880, 2006, 2033
AsuHPI	GGTGA	5 cut(s)	382, 583, 996, 1076, 1190
AsuII	TTCGAA	1 cut(s)	1427
AvaII	GGWCC	4 cut(s)	202, 682, 860, 1480
AvrII	CCTAGG	1 cut(s)	481
AxyI	CCTNAGG	1 cut(s)	552
BaeGI	GKGCMC	1 cut(s)	1814
BalI	TGGCCA	3 cut(s)	42, 981, 1152
BamHI	GGATCC	1 cut(s)	820
BanI	GGYRCC	3 cut(s)	224, 1798, 1916
BbsI	GAAGAC	2 cut(s)	1080, 1547
Bbv12I	GWGCWC	4 cut(s)	878, 1059, 1728, 1814
BbvCI	CCTCAGC	1 cut(s)	2076
BbvI	GCAGC	4 cut(s)	952, 980, 1312, 2063
BccI	CCATC	4 cut(s)	323, 697, 1748, 1811
BceAI	ACGGC	4 cut(s)	346, 372, 436, 449
BciT130I	CCWGG	6 cut(s)	191, 200, 456, 983, 1149, 1334
BclI	TGATCA	1 cut(s)	640
BcnI	CCSGG	3 cut(s)	880, 2006, 2033
BcoDI	GTCTC	4 cut(s)	65, 84, 1352, 2007
BfaI	CTAG	3 cut(s)	482, 1175, 1589
BfmI	CTRYAG	2 cut(s)	631, 966
BfoI	RGCGCY	2 cut(s)	228, 388
BglI	GCCNNNNNGGC	1 cut(s)	257
BglII	AGATCT	1 cut(s)	1400
BisI	GCNGC	9 cut(s)	228, 249, 322, 334, 424, 966, 969, 1301, 2052
BlnI	CCTAGG	1 cut(s)	481
BlpI	GCTNAGC	1 cut(s)	2134
BlsI	GCNGC	9 cut(s)	229, 250, 323, 335, 425, 967, 970, 1302, 2053
BmcAI	AGTACT	2 cut(s)	726, 1494
Bme1390I	CCNGG	9 cut(s)	191, 200, 456, 880, 983, 1149, 1334, 2006, 2033
Bme18I	GGWCC	4 cut(s)	202, 682, 860, 1480
BmgT120I	GGNCC	6 cut(s)	121, 202, 449, 682, 860, 1480
BmiI	GGNNCC	8 cut(s)	123, 226, 337, 822, 1295, 1481, 1800, 1918
BmrFI	CCNGG	9 cut(s)	191, 200, 456, 880, 983, 1149, 1334, 2006, 2033
BmrI	ACTGGG	1 cut(s)	1964
BmsI	GCATC	5 cut(s)	15, 578, 1336, 1704, 1892
BmuI	ACTGGG	1 cut(s)	1964
BpiI	GAAGAC	2 cut(s)	1080, 1547
BplI	GAGNNNNNCTC	4 cut(s)	158, 190, 1236, 1268
BpmI	CTGGAG	2 cut(s)	401, 438
Bpu10I	CCTNAGC	1 cut(s)	2076
Bpu1102I	GCTNAGC	1 cut(s)	2134
Bpu14I	TTCGAA	1 cut(s)	1427
BpuEI	CTTGAG	3 cut(s)	257, 299, 635
BpuMI	CCSGG	3 cut(s)	880, 2006, 2033
Bsa29I	ATCGAT	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	825
BsaHI	GRCGYC	5 cut(s)	225, 246, 287, 493, 617
BsaXI	ACNNNNNCTCC	4 cut(s)	320, 350, 1556, 1586
Bsc4I	CCNNNNNNNGG	4 cut(s)	1013, 1691, 1795, 1926
Bse1I	ACTGG	2 cut(s)	1153, 1959
Bse21I	CCTNAGG	1 cut(s)	552
Bse3DI	GCAATG	1 cut(s)	714
Bse8I	GATNNNNATC	1 cut(s)	825
BseBI	CCWGG	6 cut(s)	191, 200, 456, 983, 1149, 1334
BseCI	ATCGAT	1 cut(s)	29
BseGI	GGATG	6 cut(s)	6, 616, 630, 1141, 1351, 2104
BseJI	GATNNNNATC	1 cut(s)	825
BseLI	CCNNNNNNNGG	4 cut(s)	1013, 1691, 1795, 1926
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	5 cut(s)	543, 700, 1341, 2067, 2148
BseNI	ACTGG	2 cut(s)	1153, 1959
BseRI	GAGGAG	2 cut(s)	61, 124
BseSI	GKGCMC	1 cut(s)	1814
BseXI	GCAGC	4 cut(s)	952, 980, 1312, 2063
BseYI	CCCAGC	1 cut(s)	760
BsgI	GTGCAG	1 cut(s)	1567
Bsh1236I	CGCG	1 cut(s)	269
Bsh1285I	CGRYCG	2 cut(s)	294, 1702
BshFI	GGCC	9 cut(s)	42, 122, 260, 435, 451, 981, 1152, 1511, 1744
BshNI	GGYRCC	3 cut(s)	224, 1798, 1916
BshVI	ATCGAT	1 cut(s)	29
BsiEI	CGRYCG	2 cut(s)	294, 1702
BsiHKAI	GWGCWC	4 cut(s)	878, 1059, 1728, 1814
BsiSI	CCGG	5 cut(s)	222, 879, 1297, 2005, 2032
BslFI	GGGAC	2 cut(s)	941, 1493
BslI	CCNNNNNNNGG	4 cut(s)	1013, 1691, 1795, 1926
BsmAI	GTCTC	4 cut(s)	65, 84, 1352, 2007
BsmBI	CGTCTC	2 cut(s)	65, 84
BsmFI	GGGAC	2 cut(s)	941, 1493
BsnI	GGCC	9 cut(s)	42, 122, 260, 435, 451, 981, 1152, 1511, 1744
Bsp119I	TTCGAA	1 cut(s)	1427
Bsp1286I	GDGCHC	4 cut(s)	878, 1059, 1728, 1814
Bsp143I	GATC	7 cut(s)	291, 595, 640, 820, 1400, 2023, 2028
Bsp1720I	GCTNAGC	1 cut(s)	2134
Bsp19I	CCATGG	1 cut(s)	117
BspANI	GGCC	9 cut(s)	42, 122, 260, 435, 451, 981, 1152, 1511, 1744
BspCNI	CTCAG	5 cut(s)	544, 699, 1342, 2068, 2147
BspDI	ATCGAT	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	269
BspLI	GGNNCC	8 cut(s)	123, 226, 337, 822, 1295, 1481, 1800, 1918
BspMAI	CTGCAG	1 cut(s)	970
BspPI	GGATC	4 cut(s)	815, 828, 2023, 2031
BspQI	GCTCTTC	1 cut(s)	750
BspT104I	TTCGAA	1 cut(s)	1427
BspT107I	GGYRCC	3 cut(s)	224, 1798, 1916
BsrBI	CCGCTC	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	714
BsrI	ACTGG	2 cut(s)	1153, 1959
BssMI	GATC	7 cut(s)	291, 595, 640, 820, 1400, 2023, 2028
BssNAI	GTATAC	1 cut(s)	1249
BssNI	GRCGYC	5 cut(s)	225, 246, 287, 493, 617
BssT1I	CCWWGG	6 cut(s)	117, 481, 904, 1012, 1130, 1225
Bst1107I	GTATAC	1 cut(s)	1249
Bst2UI	CCWGG	6 cut(s)	191, 200, 456, 983, 1149, 1334
Bst4CI	ACNGT	7 cut(s)	662, 1286, 1340, 1767, 1816, 1965, 1978
Bst6I	CTCTTC	3 cut(s)	507, 750, 1259
BstACI	GRCGYC	5 cut(s)	225, 246, 287, 493, 617
BstAPI	GCANNNNNTGC	1 cut(s)	505
BstBI	TTCGAA	1 cut(s)	1427
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	6 cut(s)	552, 686, 1194, 1350, 2076, 2134
BstDSI	CCRYGG	1 cut(s)	117
BstENI	CCTNNNNNAGG	1 cut(s)	1011
BstF5I	GGATG	6 cut(s)	6, 616, 630, 1141, 1351, 2104
BstFNI	CGCG	1 cut(s)	269
BstH2I	RGCGCY	2 cut(s)	228, 388
BstHHI	GCGC	5 cut(s)	6, 227, 271, 387, 464
BstKTI	GATC	7 cut(s)	294, 598, 643, 823, 1403, 2026, 2031
BstMAI	GTCTC	4 cut(s)	65, 84, 1352, 2007
BstMBI	GATC	7 cut(s)	291, 595, 640, 820, 1400, 2023, 2028
BstMCI	CGRYCG	2 cut(s)	294, 1702
BstMWI	GCNNNNNNNGC	7 cut(s)	257, 266, 330, 432, 505, 1328, 1508
BstNI	CCWGG	6 cut(s)	191, 200, 456, 983, 1149, 1334
BstNSI	RCATGY	2 cut(s)	523, 771
BstSCI	CCNGG	9 cut(s)	189, 198, 454, 878, 981, 1147, 1332, 2004, 2031
BstSFI	CTRYAG	2 cut(s)	631, 966
BstSLI	GKGCMC	1 cut(s)	1814
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	4 cut(s)	952, 980, 1312, 2063
BstV2I	GAAGAC	2 cut(s)	1080, 1547
BstX2I	RGATCY	3 cut(s)	820, 1400, 2028
BstXI	CCANNNNNNTGG	2 cut(s)	118, 2129
BstYI	RGATCY	3 cut(s)	820, 1400, 2028
BstZ17I	GTATAC	1 cut(s)	1249
Bsu15I	ATCGAT	1 cut(s)	29
Bsu36I	CCTNAGG	1 cut(s)	552
BsuRI	GGCC	9 cut(s)	42, 122, 260, 435, 451, 981, 1152, 1511, 1744
BsuTUI	ATCGAT	1 cut(s)	29
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	6 cut(s)	6, 616, 630, 1141, 1351, 2104
BtsIMutI	CAGTG	1 cut(s)	1874
Cac8I	GCNNGC	1 cut(s)	433
CaiI	CAGNNNCTG	3 cut(s)	797, 899, 2057
CfoI	GCGC	5 cut(s)	6, 227, 271, 387, 464
Cfr13I	GGNCC	6 cut(s)	121, 202, 449, 682, 860, 1480
ClaI	ATCGAT	1 cut(s)	29
CseI	GACGC	6 cut(s)	254, 276, 482, 606, 878, 2043
CsiI	ACCWGGT	1 cut(s)	198
Csp6I	GTAC	5 cut(s)	725, 934, 1493, 1917, 1961
CviAII	CATG	7 cut(s)	118, 520, 578, 768, 1513, 1738, 2091
CviQI	GTAC	5 cut(s)	725, 934, 1493, 1917, 1961
DdeI	CTNAG	6 cut(s)	552, 686, 1194, 1350, 2076, 2134
DinI	GGCGCC	1 cut(s)	226
DpnI	GATC	7 cut(s)	293, 597, 642, 822, 1402, 2025, 2030
DpnII	GATC	7 cut(s)	291, 595, 640, 820, 1400, 2023, 2028
DraIII	CACNNNGTG	1 cut(s)	1178
EaeI	YGGCCR	3 cut(s)	40, 979, 1150
Eam1104I	CTCTTC	3 cut(s)	507, 750, 1259
EarI	CTCTTC	3 cut(s)	507, 750, 1259
EciI	GGCGGA	1 cut(s)	2111
Eco130I	CCWWGG	6 cut(s)	117, 481, 904, 1012, 1130, 1225
Eco147I	AGGCCT	1 cut(s)	260
Eco32I	GATATC	2 cut(s)	1002, 1893
Eco47I	GGWCC	4 cut(s)	202, 682, 860, 1480
Eco57I	CTGAAG	4 cut(s)	79, 233, 681, 774
Eco81I	CCTNAGG	1 cut(s)	552
EcoNI	CCTNNNNNAGG	1 cut(s)	1011
EcoO109I	RGGNCCY	1 cut(s)	682
EcoRII	CCWGG	6 cut(s)	189, 198, 454, 981, 1147, 1332
EcoRV	GATATC	2 cut(s)	1002, 1893
EcoT14I	CCWWGG	6 cut(s)	117, 481, 904, 1012, 1130, 1225
EgeI	GGCGCC	1 cut(s)	226
EheI	GGCGCC	1 cut(s)	226
ErhI	CCWWGG	6 cut(s)	117, 481, 904, 1012, 1130, 1225
Esp3I	CGTCTC	2 cut(s)	65, 84
FaeI	CATG	7 cut(s)	121, 523, 581, 771, 1516, 1741, 2094
FalI	AAGNNNNNCTT	4 cut(s)	657, 689, 711, 743
FaqI	GGGAC	2 cut(s)	941, 1493
FatI	CATG	7 cut(s)	117, 519, 577, 767, 1512, 1737, 2090
FauI	CCCGC	1 cut(s)	412
FauNDI	CATATG	1 cut(s)	1366
FbaI	TGATCA	1 cut(s)	640
FblI	GTMKAC	2 cut(s)	1212, 1248
Fnu4HI	GCNGC	9 cut(s)	228, 249, 322, 334, 424, 966, 969, 1301, 2052
FokI	GGATG	5 cut(s)	623, 637, 1148, 1358, 2111
Fsp4HI	GCNGC	9 cut(s)	228, 249, 322, 334, 424, 966, 969, 1301, 2052
FspAI	RTGCGCAY	1 cut(s)	5
FspBI	CTAG	3 cut(s)	482, 1175, 1589
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	5 cut(s)	5, 226, 270, 386, 463
GluI	GCNGC	9 cut(s)	228, 249, 322, 334, 424, 966, 969, 1301, 2052
GsaI	CCCAGC	1 cut(s)	764
GsuI	CTGGAG	2 cut(s)	401, 438
HaeII	RGCGCY	2 cut(s)	228, 388
HaeIII	GGCC	9 cut(s)	42, 122, 260, 435, 451, 981, 1152, 1511, 1744
HapII	CCGG	5 cut(s)	222, 879, 1297, 2005, 2032
HgaI	GACGC	6 cut(s)	254, 276, 482, 606, 878, 2043
HhaI	GCGC	5 cut(s)	6, 227, 271, 387, 464
Hin1I	GRCGYC	5 cut(s)	225, 246, 287, 493, 617
Hin1II	CATG	7 cut(s)	121, 523, 581, 771, 1516, 1741, 2094
Hin6I	GCGC	5 cut(s)	4, 225, 269, 385, 462
HinP1I	GCGC	5 cut(s)	4, 225, 269, 385, 462
HincII	GTYRAC	4 cut(s)	343, 532, 1066, 1213
HindII	GTYRAC	4 cut(s)	343, 532, 1066, 1213
HindIII	AAGCTT	4 cut(s)	275, 671, 1500, 1527
HinfI	GANTC	5 cut(s)	143, 1026, 1199, 1553, 1982
HpaI	GTTAAC	1 cut(s)	343
HpaII	CCGG	5 cut(s)	222, 879, 1297, 2005, 2032
HphI	GGTGA	5 cut(s)	382, 583, 996, 1076, 1190
Hpy166II	GTNNAC	8 cut(s)	343, 532, 1038, 1066, 1213, 1249, 1812, 1961
Hpy188III	TCNNGA	6 cut(s)	184, 295, 380, 412, 893, 1589
Hpy8I	GTNNAC	8 cut(s)	343, 532, 1038, 1066, 1213, 1249, 1812, 1961
Hpy99I	CGWCG	3 cut(s)	292, 329, 332
HpyAV	CCTTC	5 cut(s)	135, 277, 873, 1411, 1695
HpyCH4III	ACNGT	7 cut(s)	662, 1286, 1340, 1767, 1816, 1965, 1978
HpyCH4IV	ACGT	1 cut(s)	358
HpyF10VI	GCNNNNNNNGC	7 cut(s)	257, 266, 330, 432, 505, 1328, 1508
HpyF3I	CTNAG	6 cut(s)	552, 686, 1194, 1350, 2076, 2134
HpySE526I	ACGT	1 cut(s)	358
Hsp92I	GRCGYC	5 cut(s)	225, 246, 287, 493, 617
Hsp92II	CATG	7 cut(s)	121, 523, 581, 771, 1516, 1741, 2094
HspAI	GCGC	5 cut(s)	4, 225, 269, 385, 462
KasI	GGCGCC	1 cut(s)	224
KpnI	GGTACC	1 cut(s)	1920
Ksp22I	TGATCA	1 cut(s)	640
KspAI	GTTAAC	1 cut(s)	343
Kzo9I	GATC	7 cut(s)	291, 595, 640, 820, 1400, 2023, 2028
LguI	GCTCTTC	1 cut(s)	750
LmnI	GCTCC	3 cut(s)	74, 341, 382
Lsp1109I	GCAGC	4 cut(s)	952, 980, 1312, 2063
LweI	GCATC	5 cut(s)	15, 578, 1336, 1704, 1892
MabI	ACCWGGT	1 cut(s)	198
MaeI	CTAG	3 cut(s)	482, 1175, 1589
MaeII	ACGT	1 cut(s)	358
MaeIII	GTNAC	5 cut(s)	354, 544, 947, 1621, 1996
MalI	GATC	7 cut(s)	293, 597, 642, 822, 1402, 2025, 2030
MbiI	CCGCTC	1 cut(s)	207
MboI	GATC	7 cut(s)	291, 595, 640, 820, 1400, 2023, 2028
MfeI	CAATTG	3 cut(s)	36, 855, 1923
MflI	RGATCY	3 cut(s)	820, 1400, 2028
MhlI	GDGCHC	4 cut(s)	878, 1059, 1728, 1814
MlsI	TGGCCA	3 cut(s)	42, 981, 1152
MluNI	TGGCCA	3 cut(s)	42, 981, 1152
Mly113I	GGCGCC	1 cut(s)	225
MlyI	GAGTC	3 cut(s)	137, 1035, 1562
MmeI	TCCRAC	2 cut(s)	504, 1682
Mox20I	TGGCCA	3 cut(s)	42, 981, 1152
MroXI	GAANNNNTTC	1 cut(s)	694
MscI	TGGCCA	3 cut(s)	42, 981, 1152
MseI	TTAA	5 cut(s)	342, 606, 1289, 1608, 1770
MslI	CAYNNNNRTG	2 cut(s)	116, 914
Msp20I	TGGCCA	3 cut(s)	42, 981, 1152
MspA1I	CMGCKG	2 cut(s)	321, 752
MspI	CCGG	5 cut(s)	222, 879, 1297, 2005, 2032
MspR9I	CCNGG	9 cut(s)	191, 200, 456, 880, 983, 1149, 1334, 2006, 2033
MunI	CAATTG	3 cut(s)	36, 855, 1923
MvaI	CCWGG	6 cut(s)	191, 200, 456, 983, 1149, 1334
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	7 cut(s)	257, 266, 330, 432, 505, 1328, 1508
NarI	GGCGCC	1 cut(s)	225
NciI	CCSGG	3 cut(s)	880, 2006, 2033
NcoI	CCATGG	1 cut(s)	117
NdeI	CATATG	1 cut(s)	1366
NdeII	GATC	7 cut(s)	291, 595, 640, 820, 1400, 2023, 2028
NlaIII	CATG	7 cut(s)	121, 523, 581, 771, 1516, 1741, 2094
NlaIV	GGNNCC	8 cut(s)	123, 226, 337, 822, 1295, 1481, 1800, 1918
NmuCI	GTSAC	2 cut(s)	544, 1996
NsbI	TGCGCA	1 cut(s)	5
NspI	RCATGY	2 cut(s)	523, 771
NspV	TTCGAA	1 cut(s)	1427
PceI	AGGCCT	1 cut(s)	260
PciI	ACATGT	1 cut(s)	519
PciSI	GCTCTTC	1 cut(s)	750
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PdmI	GAANNNNTTC	1 cut(s)	694
PfeI	GAWTC	2 cut(s)	1199, 1982
PfoI	TCCNGGA	1 cut(s)	2004
PkrI	GCNGC	9 cut(s)	229, 250, 323, 335, 425, 967, 970, 1302, 2053
Ple19I	CGATCG	1 cut(s)	294
PleI	GAGTC	3 cut(s)	137, 1034, 1561
PluTI	GGCGCC	1 cut(s)	228
PpsI	GAGTC	3 cut(s)	137, 1034, 1561
PpuMI	RGGWCCY	1 cut(s)	682
PscI	ACATGT	1 cut(s)	519
PshBI	ATTAAT	1 cut(s)	1608
Psp5II	RGGWCCY	1 cut(s)	682
Psp6I	CCWGG	6 cut(s)	189, 198, 454, 981, 1147, 1332
PspFI	CCCAGC	1 cut(s)	760
PspGI	CCWGG	6 cut(s)	189, 198, 454, 981, 1147, 1332
PspN4I	GGNNCC	8 cut(s)	123, 226, 337, 822, 1295, 1481, 1800, 1918
PspPI	GGNCC	6 cut(s)	121, 202, 449, 682, 860, 1480
PspPPI	RGGWCCY	1 cut(s)	682
PsrI	GAACNNNNNNTAC	2 cut(s)	1944, 1976
PstI	CTGCAG	1 cut(s)	970
PstNI	CAGNNNCTG	3 cut(s)	797, 899, 2057
PsuI	RGATCY	3 cut(s)	820, 1400, 2028
PvuI	CGATCG	1 cut(s)	294
RsaI	GTAC	5 cut(s)	726, 935, 1494, 1918, 1962
RsaNI	GTAC	5 cut(s)	725, 934, 1493, 1917, 1961
RseI	CAYNNNNRTG	2 cut(s)	116, 914
SalI	GTCGAC	1 cut(s)	1211
SapI	GCTCTTC	1 cut(s)	750
SaqAI	TTAA	5 cut(s)	342, 606, 1289, 1608, 1770
SatI	GCNGC	9 cut(s)	228, 249, 322, 334, 424, 966, 969, 1301, 2052
Sau3AI	GATC	7 cut(s)	291, 595, 640, 820, 1400, 2023, 2028
Sau96I	GGNCC	6 cut(s)	121, 202, 449, 682, 860, 1480
ScaI	AGTACT	2 cut(s)	726, 1494
SchI	GAGTC	3 cut(s)	137, 1035, 1562
ScrFI	CCNGG	9 cut(s)	191, 200, 456, 880, 983, 1149, 1334, 2006, 2033
SduI	GDGCHC	4 cut(s)	878, 1059, 1728, 1814
SexAI	ACCWGGT	1 cut(s)	198
SfaNI	GCATC	5 cut(s)	15, 578, 1336, 1704, 1892
SfcI	CTRYAG	2 cut(s)	631, 966
SfoI	GGCGCC	1 cut(s)	226
SfuI	TTCGAA	1 cut(s)	1427
SinI	GGWCC	4 cut(s)	202, 682, 860, 1480
SmiMI	CAYNNNNRTG	2 cut(s)	116, 914
SmlI	CTYRAG	3 cut(s)	272, 278, 650
SmoI	CTYRAG	3 cut(s)	272, 278, 650
SseBI	AGGCCT	1 cut(s)	260
SspDI	GGCGCC	1 cut(s)	224
SspMI	CTAG	3 cut(s)	482, 1175, 1589
StuI	AGGCCT	1 cut(s)	260
StyD4I	CCNGG	9 cut(s)	189, 198, 454, 878, 981, 1147, 1332, 2004, 2031
StyI	CCWWGG	6 cut(s)	117, 481, 904, 1012, 1130, 1225
TaaI	ACNGT	7 cut(s)	662, 1286, 1340, 1767, 1816, 1965, 1978
TaiI	ACGT	1 cut(s)	361
TaqI	TCGA	6 cut(s)	29, 183, 290, 294, 1212, 1427
TaqII	GACCGA	1 cut(s)	1688
TatI	WGTACW	3 cut(s)	724, 933, 1492
TauI	GCSGC	5 cut(s)	230, 251, 324, 336, 426
TfiI	GAWTC	2 cut(s)	1199, 1982
Tru1I	TTAA	5 cut(s)	342, 606, 1289, 1608, 1770
Tru9I	TTAA	5 cut(s)	342, 606, 1289, 1608, 1770
TscAI	CASTG	1 cut(s)	1881
TseFI	GTSAC	2 cut(s)	544, 1996
TseI	GCWGC	4 cut(s)	965, 968, 1300, 2051
Tsp45I	GTSAC	2 cut(s)	544, 1996
TspDTI	ATGAA	7 cut(s)	1152, 1329, 1353, 1529, 1553, 1776, 1965
TspGWI	ACGGA	6 cut(s)	251, 328, 1019, 1769, 1957, 1975
TspRI	CASTG	1 cut(s)	1881
VneI	GTGCAC	1 cut(s)	1810
VpaK11BI	GGWCC	4 cut(s)	202, 682, 860, 1480
VspI	ATTAAT	1 cut(s)	1608
XagI	CCTNNNNNAGG	1 cut(s)	1011
XapI	RAATTY	3 cut(s)	587, 919, 1091
XbaI	TCTAGA	1 cut(s)	1588
XceI	RCATGY	2 cut(s)	523, 771
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
XmaJI	CCTAGG	1 cut(s)	481
XmiI	GTMKAC	2 cut(s)	1212, 1248
XmnI	GAANNNNTTC	1 cut(s)	694
XspI	CTAG	3 cut(s)	482, 1175, 1589
ZrmI	AGTACT	2 cut(s)	726, 1494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.