Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001310

Physical Location & Seq

Genomic Coordinates Forward (+)

62404660 .. 62409046

Gene Structure 4387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G040280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCTCACTATGCTGCTGACTGCTGGGATGCTGAGATTGAGACTTCCTATGGCTGGATTGAGTGCGTCGGCATTGCAGATAGATCTGCATATGACTTGAAGGCTCATTCGGGGAAAAGTCGTCTTGAGGCACATGAACAACTTTCAGAACCAAGACAAGTGGAGAAATTGGTTATATCTCCGGCCGAGTCAGACTCCAAGGGGGAGGTGGACTTCTTTGTCTGCACCCTTGGGGAACATGTATCCATCAAGAGCAGTATGGTGACAATTTCAAAGGTCAAAACAAGAGAACATCAAAGAAAATTCACACCCTCAGTAATCGAGCCTTCATTTGGTATTGGGAGGATTATATATTGTCTCTTTGAGCATTCCTTCTACACCAGACCAGATAAAACTGGGGATGAACAATTGAATGTGTTTCGCTTTAACCCACTTGTGGCGCCTTTTAAGTGCACAGTTTTCCCTCTGATTCGGAACCAACAGTTTGAGGATGTTGCTAAGGACATTTCCAAGTCATTGACTGCTGCTGGCATATCGCATAAAATGGATACTACAGGTACGTACCTCGATTGGGAAACGTTTGCAATCACGGTTGATTCTACATCCTCAGTCACAATTCGAGAAAGAGACAGCATAGATCAAATCCGTGTTAGTGTGAAGAAGGCAGTATCTGTTGTGAAGGAGCTCAGTGAGGGGTTGAGGACTTGGGAAGATTTGTGGTGGTCACCTAGTCAACGGTGGAAGAGATTCTGGCGTTCCTGCTTCAGATTTATATTGTCTAGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

262

Amino Acids

30.09

Weight (kDa)

6.67

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HGTP_anticodon	PF03129	150 - 229	9.8e-06	Anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29880
fragaria_vesca	FvH4_4g22441 FvH4_4g22450 FvH4_4g22450 FvH4_4g22610 FvH4_4g22610
malus_domestica	MD13G1131000.v1.1 MD13G1145800.v1.1 MD16G1141200.v1.1
prunus_persica	Prupe.1G214600_v2.0.a1
pyrus_communis	pycom13g11430 pycom13g12530 pycom16g11160 pycom16g11170
rosa_chinensis	RchiOBHm_Chr1g0361881 RchiOBHm_Chr4g0428711 RchiOBHm_Chr4g0428851
rosa_laevigata	RLG00000007120 RLG00000007133 RLG00000027689 RLG00000027690 RLG00000027694
rosa_multiflora	Rmu_co8208336.1_g000001 Rmu_co8210234.1_g000001 Rmu_sc0003316.1_g000006 Rmu_sc0008612.1_g000003 Rmu_sc0018216.1_g000001 Rmu_ssc0000124.1_g000013
rosa_roxburghii	Rroxscaffold_4G00294630 Rroxscaffold_5G00370530
rosa_rugosa	Rorug01G0292100 Rorug04G0227400 Rorug04G0227500 Rorug04G0229700
rosa_samantha	Rh1AG302800 Rh1BG265900 Rh1BG266000 Rh1CG284000 Rh1DG295900 Rh1DG296000 Rh4AG284700 Rh4AG284900 Rh4AG286400 Rh4BG290700 Rh4BG290900 Rh4BG292200 Rh4CG308200 Rh4DG288200 Rh4DG289400
rosa_wichuraiana	Rw0G020620 Rw1G026830 Rw4G024720 Rw4G024830 Rw7G040280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
AccB1I	GGYRCC	1 cut(s)	439
AclI	AACGTT	1 cut(s)	578
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	748
AcyI	GRCGYC	1 cut(s)	440
AfaI	GTAC	2 cut(s)	559, 563
AfiI	CCNNNNNNNGG	4 cut(s)	54, 332, 436, 571
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	3 cut(s)	100, 273, 412
AluBI	AGCT	1 cut(s)	685
AluI	AGCT	1 cut(s)	685
Alw21I	GWGCWC	2 cut(s)	455, 687
Alw26I	GTCTC	3 cut(s)	35, 362, 621
Alw44I	GTGCAC	1 cut(s)	451
AlwNI	CAGNNNCTG	1 cut(s)	671
AoxI	GGCC	1 cut(s)	183
ApaLI	GTGCAC	1 cut(s)	451
ApeKI	GCWGC	2 cut(s)	14, 524
ApoI	RAATTY	1 cut(s)	302
Asp700I	GAANNNNTTC	1 cut(s)	746
AspLEI	GCGC	1 cut(s)	442
AsuHPI	GGTGA	2 cut(s)	274, 717
BaeGI	GKGCMC	1 cut(s)	455
BanI	GGYRCC	1 cut(s)	439
BanII	GRGCYC	1 cut(s)	687
Bbv12I	GWGCWC	2 cut(s)	455, 687
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	1 cut(s)	254
BciVI	GTATCC	2 cut(s)	253, 541
BcoDI	GTCTC	3 cut(s)	35, 362, 621
BfaI	CTAG	2 cut(s)	729, 780
BfmI	CTRYAG	1 cut(s)	552
BfoI	RGCGCY	1 cut(s)	443
BfuI	GTATCC	2 cut(s)	253, 541
BglII	AGATCT	1 cut(s)	83
BisI	GCNGC	2 cut(s)	15, 525
BlsI	GCNGC	2 cut(s)	16, 526
BmiI	GGNNCC	2 cut(s)	441, 476
BmrI	ACTGGG	1 cut(s)	405
BmsI	GCATC	1 cut(s)	19
BmuI	ACTGGG	1 cut(s)	405
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
Bpu10I	CCTNAGC	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	146
BsaAI	YACGTR	1 cut(s)	561
BsaHI	GRCGYC	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	198, 229
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 332, 436, 571
Bse1I	ACTGG	1 cut(s)	400
Bse3DI	GCAATG	1 cut(s)	72
BseDI	CCNNGG	2 cut(s)	198, 229
BseGI	GGATG	4 cut(s)	34, 406, 496, 602
BseLI	CCNNNNNNNGG	4 cut(s)	54, 332, 436, 571
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	4 cut(s)	24, 327, 621, 700
BseNI	ACTGG	1 cut(s)	400
BseSI	GKGCMC	1 cut(s)	455
BseX3I	CGGCCG	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	511
BseYI	CCCAGC	1 cut(s)	24
BsgI	GTGCAG	1 cut(s)	208
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	185
BshNI	GGYRCC	1 cut(s)	439
BsiEI	CGRYCG	1 cut(s)	186
BsiHKAI	GWGCWC	2 cut(s)	455, 687
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	4 cut(s)	54, 332, 436, 571
BsmAI	GTCTC	3 cut(s)	35, 362, 621
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	455, 687
Bsp143I	GATC	2 cut(s)	83, 637
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	4 cut(s)	25, 326, 620, 699
BspLI	GGNNCC	2 cut(s)	441, 476
BspT107I	GGYRCC	1 cut(s)	439
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	400
BssECI	CCNNGG	2 cut(s)	198, 229
BssMI	GATC	2 cut(s)	83, 637
BssNI	GRCGYC	1 cut(s)	440
BssT1I	CCWWGG	2 cut(s)	198, 229
Bst4CI	ACNGT	4 cut(s)	457, 483, 592, 738
Bst6I	CTCTTC	1 cut(s)	737
BstACI	GRCGYC	1 cut(s)	440
BstBAI	YACGTR	1 cut(s)	561
BstC8I	GCNNGC	1 cut(s)	529
BstDEI	CTNAG	5 cut(s)	33, 313, 498, 607, 686
BstEII	GGTNACC	1 cut(s)	723
BstF5I	GGATG	4 cut(s)	34, 406, 496, 602
BstH2I	RGCGCY	1 cut(s)	443
BstHHI	GCGC	1 cut(s)	442
BstKTI	GATC	2 cut(s)	86, 640
BstMAI	GTCTC	3 cut(s)	35, 362, 621
BstMBI	GATC	2 cut(s)	83, 637
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	242
BstPI	GGTNACC	1 cut(s)	723
BstSFI	CTRYAG	1 cut(s)	552
BstSLI	GKGCMC	1 cut(s)	455
BstSNI	TACGTA	1 cut(s)	561
BstV1I	GCAGC	1 cut(s)	511
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
BstZI	CGGCCG	1 cut(s)	183
BsuI	GTATCC	2 cut(s)	253, 541
BsuRI	GGCC	1 cut(s)	185
BtsCI	GGATG	4 cut(s)	34, 406, 496, 602
BtsIMutI	CAGTG	1 cut(s)	694
Cac8I	GCNNGC	1 cut(s)	529
CaiI	CAGNNNCTG	1 cut(s)	671
CfoI	GCGC	1 cut(s)	442
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	2 cut(s)	558, 562
CspCI	CAANNNNNGTGG	2 cut(s)	141, 176
CviAII	CATG	2 cut(s)	134, 239
CviJI	RGCY	6 cut(s)	5, 54, 104, 185, 325, 685
CviKI_1	RGCY	6 cut(s)	5, 54, 104, 185, 325, 685
CviQI	GTAC	2 cut(s)	558, 562
DdeI	CTNAG	5 cut(s)	33, 313, 498, 607, 686
DinI	GGCGCC	1 cut(s)	441
DpnI	GATC	2 cut(s)	85, 639
DpnII	GATC	2 cut(s)	83, 637
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	1 cut(s)	183
EagI	CGGCCG	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	737
EarI	CTCTTC	1 cut(s)	737
Ecl136II	GAGCTC	1 cut(s)	685
EclXI	CGGCCG	1 cut(s)	183
Eco105I	TACGTA	1 cut(s)	561
Eco130I	CCWWGG	2 cut(s)	198, 229
Eco24I	GRGCYC	1 cut(s)	687
Eco52I	CGGCCG	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	685
Eco57I	CTGAAG	1 cut(s)	748
Eco91I	GGTNACC	1 cut(s)	723
EcoICRI	GAGCTC	1 cut(s)	685
EcoO65I	GGTNACC	1 cut(s)	723
EcoT14I	CCWWGG	2 cut(s)	198, 229
EcoT38I	GRGCYC	1 cut(s)	687
EgeI	GGCGCC	1 cut(s)	441
EheI	GGCGCC	1 cut(s)	441
ErhI	CCWWGG	2 cut(s)	198, 229
FaeI	CATG	2 cut(s)	137, 242
FatI	CATG	2 cut(s)	133, 238
FauNDI	CATATG	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	15, 525
FokI	GGATG	4 cut(s)	41, 413, 503, 589
FriOI	GRGCYC	1 cut(s)	687
Fsp4HI	GCNGC	2 cut(s)	15, 525
FspBI	CTAG	2 cut(s)	729, 780
GlaI	GCGC	1 cut(s)	441
GluI	GCNGC	2 cut(s)	15, 525
GsaI	CCCAGC	1 cut(s)	28
HaeII	RGCGCY	1 cut(s)	443
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	1 cut(s)	182
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	1 cut(s)	442
Hin1I	GRCGYC	1 cut(s)	440
Hin1II	CATG	2 cut(s)	137, 242
Hin6I	GCGC	1 cut(s)	440
HinP1I	GCGC	1 cut(s)	440
HincII	GTYRAC	1 cut(s)	734
HindII	GTYRAC	1 cut(s)	734
HinfI	GANTC	5 cut(s)	188, 194, 469, 596, 747
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	2 cut(s)	274, 717
Hpy166II	GTNNAC	3 cut(s)	211, 453, 734
Hpy188I	TCNGA	5 cut(s)	148, 193, 468, 474, 767
Hpy188III	TCNNGA	4 cut(s)	125, 250, 620, 780
Hpy8I	GTNNAC	3 cut(s)	211, 453, 734
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	5 cut(s)	94, 336, 382, 655, 673
HpyCH4III	ACNGT	4 cut(s)	457, 483, 592, 738
HpyCH4IV	ACGT	2 cut(s)	560, 578
HpyCH4V	TGCA	5 cut(s)	77, 89, 225, 453, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	5 cut(s)	33, 313, 498, 607, 686
HpySE526I	ACGT	2 cut(s)	560, 578
Hsp92I	GRCGYC	1 cut(s)	440
Hsp92II	CATG	2 cut(s)	137, 242
HspAI	GCGC	1 cut(s)	440
KasI	GGCGCC	1 cut(s)	439
Kzo9I	GATC	2 cut(s)	83, 637
LmnI	GCTCC	1 cut(s)	682
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	2 cut(s)	729, 780
MaeII	ACGT	2 cut(s)	560, 578
MaeIII	GTNAC	3 cut(s)	262, 610, 723
MalI	GATC	2 cut(s)	85, 639
MboI	GATC	2 cut(s)	83, 637
MboII	GAAGA	3 cut(s)	670, 722, 754
MfeI	CAATTG	1 cut(s)	407
MflI	RGATCY	1 cut(s)	83
MhlI	GDGCHC	2 cut(s)	455, 687
MluCI	AATT	5 cut(s)	167, 267, 302, 407, 615
Mly113I	GGCGCC	1 cut(s)	440
MlyI	GAGTC	2 cut(s)	188, 197
MroXI	GAANNNNTTC	1 cut(s)	746
MseI	TTAA	2 cut(s)	426, 447
MspI	CCGG	1 cut(s)	182
MunI	CAATTG	1 cut(s)	407
Mva1269I	GAATGC	1 cut(s)	367
MwoI	GCNNNNNNNGC	1 cut(s)	11
NarI	GGCGCC	1 cut(s)	440
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	2 cut(s)	83, 637
NlaIII	CATG	2 cut(s)	137, 242
NlaIV	GGNNCC	2 cut(s)	441, 476
NmeAIII	GCCGAG	1 cut(s)	211
NmuCI	GTSAC	3 cut(s)	262, 610, 723
NspI	RCATGY	1 cut(s)	242
PciI	ACATGT	1 cut(s)	238
PctI	GAATGC	1 cut(s)	367
PdmI	GAANNNNTTC	1 cut(s)	746
PfeI	GAWTC	3 cut(s)	469, 596, 747
PkrI	GCNGC	2 cut(s)	16, 526
PleI	GAGTC	2 cut(s)	188, 196
PluTI	GGCGCC	1 cut(s)	443
PpsI	GAGTC	2 cut(s)	188, 196
Ppu21I	YACGTR	1 cut(s)	561
PscI	ACATGT	1 cut(s)	238
Psp124BI	GAGCTC	1 cut(s)	687
Psp1406I	AACGTT	1 cut(s)	578
PspEI	GGTNACC	1 cut(s)	723
PspFI	CCCAGC	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	441, 476
PstNI	CAGNNNCTG	1 cut(s)	671
PsuI	RGATCY	1 cut(s)	83
RsaI	GTAC	2 cut(s)	559, 563
RsaNI	GTAC	2 cut(s)	558, 562
SacI	GAGCTC	1 cut(s)	687
SaqAI	TTAA	2 cut(s)	426, 447
SatI	GCNGC	2 cut(s)	15, 525
Sau3AI	GATC	2 cut(s)	83, 637
SchI	GAGTC	2 cut(s)	188, 197
SduI	GDGCHC	2 cut(s)	455, 687
SetI	ASST	8 cut(s)	210, 279, 559, 563, 567, 581, 687, 730
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	552
SfoI	GGCGCC	1 cut(s)	441
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SnaBI	TACGTA	1 cut(s)	561
Sse9I	AATT	5 cut(s)	167, 267, 302, 407, 615
SspDI	GGCGCC	1 cut(s)	439
SspMI	CTAG	2 cut(s)	729, 780
SstI	GAGCTC	1 cut(s)	687
StyI	CCWWGG	2 cut(s)	198, 229
TaaI	ACNGT	4 cut(s)	457, 483, 592, 738
TaiI	ACGT	2 cut(s)	563, 581
TaqI	TCGA	3 cut(s)	321, 567, 619
TasI	AATT	5 cut(s)	167, 267, 302, 407, 615
TfiI	GAWTC	3 cut(s)	469, 596, 747
Tru1I	TTAA	2 cut(s)	426, 447
Tru9I	TTAA	2 cut(s)	426, 447
TscAI	CASTG	1 cut(s)	694
TseFI	GTSAC	3 cut(s)	262, 610, 723
TseI	GCWGC	2 cut(s)	14, 524
Tsp45I	GTSAC	3 cut(s)	262, 610, 723
TspDTI	ATGAA	3 cut(s)	150, 318, 417
TspGWI	ACGGA	1 cut(s)	635
TspRI	CASTG	1 cut(s)	694
VneI	GTGCAC	1 cut(s)	451
XapI	RAATTY	1 cut(s)	302
XbaI	TCTAGA	1 cut(s)	779
XceI	RCATGY	1 cut(s)	242
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205
XmnI	GAANNNNTTC	1 cut(s)	746
XspI	CTAG	2 cut(s)	729, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.