Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001310

Physical Location & Seq

Genomic Coordinates Forward (+)

25282324 .. 25283664

Gene Structure 1341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g22450.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCTCACTATGCTGCTGACTGTTGGGATGCTGAGATTGAGATTTCCTATGGCTGGATTGAGTGCATCGGCATTGCAGATAGATCTGCATATGACTTGAAGGCTCATTCGCAGAAAAGCTCAAGTCGTCTCGAGGCACATGAACAACTTCCAGAACCAAGTGAAGTGGACAAATTGATTGTATCTCCGGTAAAGAAAAACATCGGTCTTGCTTTCAGGAAGGAGCAAAATAATGTGCTTGAAGCTTTGGAGGCTATGAATGAAGAAGAAATTTCAAAAATGAAGTCTGAATTAGACTCGAAAGGGGAGGTGGACTTCTTTGTCTGCACTCTTGGGAAACATGTATCTATTACGAGCAATATGGTGACAATTTCAAAGGTTAAAACAAGAGAACATCAAAGAAAATTCACACCCTCAGTAATTGAGCCTTCACTTGGTATTGGGCGGATAATTTATTGTCTCTTTGAGCATTCCTTCTACACCAGACCAGATAAAACTGGGGATGAACAATTGAATGTGTTTCGCTTTAACCCACTTGTGGCGCCGTTTAAGTGCACAGTTCTCCCTCTGGTTCAGAACCAACAGTTTGAGGATGTTGCTAAGGACATCTCCAAGTCATTGACTGCTGCTGGCATTTCGCACAAAATGGACACTACAGGTACCTCAATTGGGAAACGTTATGCACGTACTGATGAGCTCGGTGTACCCTTTGCAATCACGGTTGACTCTAAATCCTCGGTGACAATTCGAGAAAGAGACAGCAAAGATCAAATCCGTGTCAGTGCGAAGAAGGCAGCATCTGTTGTGAAGGAGGCCAGTGAGGGGTTAAGGACTTGGGAAGATGTGTGGTGGTCTCCTAGTCAACAGTGGAAAAGATTCTGGCATTCCTGCTTCAGATTTCTTCTTAGATTTGTACTGTCTAGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

310

Amino Acids

35.14

Weight (kDa)

7.63

Isoelectric Point (pI)

52.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HGTP_anticodon	PF03129	99 - 186	8.4e-21	Anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29880
fragaria_vesca	FvH4_4g22441 FvH4_4g22450 FvH4_4g22450 FvH4_4g22610 FvH4_4g22610
malus_domestica	MD13G1131000.v1.1 MD13G1145800.v1.1 MD16G1141200.v1.1
prunus_persica	Prupe.1G214600_v2.0.a1
pyrus_communis	pycom13g11430 pycom13g12530 pycom16g11160 pycom16g11170
rosa_chinensis	RchiOBHm_Chr1g0361881 RchiOBHm_Chr4g0428711 RchiOBHm_Chr4g0428851
rosa_laevigata	RLG00000007120 RLG00000007133 RLG00000027689 RLG00000027690 RLG00000027694
rosa_multiflora	Rmu_co8208336.1_g000001 Rmu_co8210234.1_g000001 Rmu_sc0003316.1_g000006 Rmu_sc0008612.1_g000003 Rmu_sc0018216.1_g000001 Rmu_ssc0000124.1_g000013
rosa_roxburghii	Rroxscaffold_4G00294630 Rroxscaffold_5G00370530
rosa_rugosa	Rorug01G0292100 Rorug04G0227400 Rorug04G0227500 Rorug04G0229700
rosa_samantha	Rh1AG302800 Rh1BG265900 Rh1BG266000 Rh1CG284000 Rh1DG295900 Rh1DG296000 Rh4AG284700 Rh4AG284900 Rh4AG286400 Rh4BG290700 Rh4BG290900 Rh4BG292200 Rh4CG308200 Rh4DG288200 Rh4DG289400
rosa_wichuraiana	Rw0G020620 Rw1G026830 Rw4G024720 Rw4G024830 Rw7G040280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
Acc65I	GGTACC	1 cut(s)	659
AccB1I	GGYRCC	2 cut(s)	541, 659
AciI	CCGC	1 cut(s)	445
AclI	AACGTT	1 cut(s)	676
AcsI	RAATTY	2 cut(s)	270, 404
AcuI	CTGAAG	1 cut(s)	877
AcyI	GRCGYC	1 cut(s)	542
AfaI	GTAC	4 cut(s)	661, 688, 705, 915
AfiI	CCNNNNNNNGG	5 cut(s)	54, 434, 538, 669, 822
AflIII	ACRYGT	1 cut(s)	340
AgsI	TTSAA	5 cut(s)	100, 242, 276, 375, 514
AluBI	AGCT	3 cut(s)	120, 245, 697
AluI	AGCT	3 cut(s)	120, 245, 697
Alw21I	GWGCWC	2 cut(s)	557, 699
Alw26I	GTCTC	4 cut(s)	134, 464, 750, 858
Alw44I	GTGCAC	1 cut(s)	553
AlwNI	CAGNNNCTG	1 cut(s)	800
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	1 cut(s)	813
ApaLI	GTGCAC	1 cut(s)	553
ApeKI	GCWGC	3 cut(s)	14, 626, 794
ApoI	RAATTY	2 cut(s)	270, 404
ArsI	GACNNNNNNTTYG	2 cut(s)	269, 301
Asp700I	GAANNNNTTC	2 cut(s)	147, 875
Asp718I	GGTACC	1 cut(s)	659
AspLEI	GCGC	1 cut(s)	544
AsuHPI	GGTGA	2 cut(s)	376, 751
AvaI	CYCGRG	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	557
BanI	GGYRCC	2 cut(s)	541, 659
BanII	GRGCYC	1 cut(s)	699
Bbv12I	GWGCWC	2 cut(s)	557, 699
BbvI	GCAGC	2 cut(s)	613, 806
BceAI	ACGGC	1 cut(s)	529
BcoDI	GTCTC	4 cut(s)	134, 464, 750, 858
BfaI	CTAG	3 cut(s)	858, 921, 928
BfmI	CTRYAG	1 cut(s)	654
BfoI	RGCGCY	1 cut(s)	545
BglII	AGATCT	1 cut(s)	83
BisI	GCNGC	3 cut(s)	15, 627, 795
BlsI	GCNGC	3 cut(s)	16, 628, 796
BmeT110I	CYCGRG	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	543, 661
BmrI	ACTGGG	1 cut(s)	507
BmsI	GCATC	3 cut(s)	19, 75, 806
BmuI	ACTGGG	1 cut(s)	507
Bpu10I	CCTNAGC	1 cut(s)	600
BpuEI	CTTGAG	1 cut(s)	106
BsaAI	YACGTR	1 cut(s)	686
BsaHI	GRCGYC	1 cut(s)	542
BsaI	GGTCTC	1 cut(s)	858
BsaJI	CCNNGG	1 cut(s)	735
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	5 cut(s)	54, 434, 538, 669, 822
Bse1I	ACTGG	2 cut(s)	502, 816
Bse3DI	GCAATG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	735
BseGI	GGATG	3 cut(s)	34, 508, 598
BseLI	CCNNNNNNNGG	5 cut(s)	54, 434, 538, 669, 822
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	2 cut(s)	24, 429
BseNI	ACTGG	2 cut(s)	502, 816
BseSI	GKGCMC	1 cut(s)	557
BseXI	GCAGC	2 cut(s)	613, 806
BsgI	GTGCAG	1 cut(s)	310
BshFI	GGCC	1 cut(s)	815
BshNI	GGYRCC	2 cut(s)	541, 659
BsiHKAI	GWGCWC	2 cut(s)	557, 699
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	188
BslI	CCNNNNNNNGG	5 cut(s)	54, 434, 538, 669, 822
BsmAI	GTCTC	4 cut(s)	134, 464, 750, 858
BsmBI	CGTCTC	1 cut(s)	134
BsmI	GAATGC	2 cut(s)	469, 883
BsnI	GGCC	1 cut(s)	815
Bso31I	GGTCTC	1 cut(s)	858
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	2 cut(s)	557, 699
Bsp143I	GATC	2 cut(s)	83, 766
BspACI	CCGC	1 cut(s)	445
BspANI	GGCC	1 cut(s)	815
BspCNI	CTCAG	2 cut(s)	25, 428
BspLI	GGNNCC	2 cut(s)	543, 661
BspT107I	GGYRCC	2 cut(s)	541, 659
BspTNI	GGTCTC	1 cut(s)	858
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	2 cut(s)	502, 816
BssECI	CCNNGG	1 cut(s)	735
BssMI	GATC	2 cut(s)	83, 766
BssNI	GRCGYC	1 cut(s)	542
Bst4CI	ACNGT	6 cut(s)	23, 559, 585, 721, 867, 918
BstACI	GRCGYC	1 cut(s)	542
BstBAI	YACGTR	1 cut(s)	686
BstC8I	GCNNGC	1 cut(s)	631
BstDEI	CTNAG	4 cut(s)	33, 415, 600, 905
BstF5I	GGATG	3 cut(s)	34, 508, 598
BstH2I	RGCGCY	1 cut(s)	545
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	2 cut(s)	86, 769
BstMAI	GTCTC	4 cut(s)	134, 464, 750, 858
BstMBI	GATC	2 cut(s)	83, 766
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 251, 791
BstNSI	RCATGY	1 cut(s)	344
BstSFI	CTRYAG	1 cut(s)	654
BstSLI	GKGCMC	1 cut(s)	557
BstV1I	GCAGC	2 cut(s)	613, 806
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	815
BtsCI	GGATG	3 cut(s)	34, 508, 598
BtsIMutI	CAGTG	3 cut(s)	787, 823, 872
Cac8I	GCNNGC	1 cut(s)	631
CaiI	CAGNNNCTG	1 cut(s)	800
CfoI	GCGC	1 cut(s)	544
Csp6I	GTAC	4 cut(s)	660, 687, 704, 914
CspCI	CAANNNNNGTGG	2 cut(s)	147, 182
CviAII	CATG	2 cut(s)	140, 341
CviJI	RGCY	9 cut(s)	5, 54, 104, 120, 245, 254, 427, 697, 815
CviKI_1	RGCY	9 cut(s)	5, 54, 104, 120, 245, 254, 427, 697, 815
CviQI	GTAC	4 cut(s)	660, 687, 704, 914
DdeI	CTNAG	4 cut(s)	33, 415, 600, 905
DinI	GGCGCC	1 cut(s)	543
DpnI	GATC	2 cut(s)	85, 768
DpnII	GATC	2 cut(s)	83, 766
DrdI	GACNNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	320
EciI	GGCGGA	1 cut(s)	460
Ecl136II	GAGCTC	1 cut(s)	697
Eco24I	GRGCYC	1 cut(s)	699
Eco31I	GGTCTC	1 cut(s)	858
Eco53kI	GAGCTC	1 cut(s)	697
Eco57I	CTGAAG	1 cut(s)	877
Eco88I	CYCGRG	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	697
EcoT38I	GRGCYC	1 cut(s)	699
EgeI	GGCGCC	1 cut(s)	543
EheI	GGCGCC	1 cut(s)	543
Esp3I	CGTCTC	1 cut(s)	134
FaeI	CATG	2 cut(s)	143, 344
FaiI	YATR	9 cut(s)	12, 51, 91, 93, 141, 257, 342, 362, 681
FatI	CATG	2 cut(s)	139, 340
FauNDI	CATATG	1 cut(s)	91
Fnu4HI	GCNGC	3 cut(s)	15, 627, 795
FokI	GGATG	3 cut(s)	41, 515, 605
FriOI	GRGCYC	1 cut(s)	699
Fsp4HI	GCNGC	3 cut(s)	15, 627, 795
FspBI	CTAG	3 cut(s)	858, 921, 928
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	3 cut(s)	15, 627, 795
HaeII	RGCGCY	1 cut(s)	545
HaeIII	GGCC	1 cut(s)	815
HapII	CCGG	1 cut(s)	188
HhaI	GCGC	1 cut(s)	544
Hin1I	GRCGYC	1 cut(s)	542
Hin1II	CATG	2 cut(s)	143, 344
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HincII	GTYRAC	2 cut(s)	724, 863
HindII	GTYRAC	2 cut(s)	724, 863
HindIII	AAGCTT	1 cut(s)	243
HinfI	GANTC	3 cut(s)	296, 725, 876
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	2 cut(s)	376, 751
Hpy166II	GTNNAC	6 cut(s)	169, 313, 555, 704, 724, 863
Hpy188I	TCNGA	3 cut(s)	289, 576, 896
Hpy188III	TCNNGA	5 cut(s)	131, 152, 217, 749, 921
Hpy8I	GTNNAC	6 cut(s)	169, 313, 555, 704, 724, 863
HpyAV	CCTTC	6 cut(s)	94, 214, 438, 484, 784, 802
HpyCH4III	ACNGT	6 cut(s)	23, 559, 585, 721, 867, 918
HpyCH4IV	ACGT	2 cut(s)	676, 685
HpyCH4V	TGCA	7 cut(s)	66, 77, 89, 327, 555, 683, 713
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 251, 791
HpyF3I	CTNAG	4 cut(s)	33, 415, 600, 905
HpySE526I	ACGT	2 cut(s)	676, 685
Hsp92I	GRCGYC	1 cut(s)	542
Hsp92II	CATG	2 cut(s)	143, 344
HspAI	GCGC	1 cut(s)	542
KasI	GGCGCC	1 cut(s)	541
KpnI	GGTACC	1 cut(s)	663
Kzo9I	GATC	2 cut(s)	83, 766
LmnI	GCTCC	1 cut(s)	223
Lsp1109I	GCAGC	2 cut(s)	613, 806
LweI	GCATC	3 cut(s)	19, 75, 806
MaeI	CTAG	3 cut(s)	858, 921, 928
MaeII	ACGT	2 cut(s)	676, 685
MaeIII	GTNAC	2 cut(s)	364, 739
MalI	GATC	2 cut(s)	85, 768
MboI	GATC	2 cut(s)	83, 766
MboII	GAAGA	5 cut(s)	275, 278, 799, 851, 893
MfeI	CAATTG	2 cut(s)	509, 666
MflI	RGATCY	1 cut(s)	83
MhlI	GDGCHC	2 cut(s)	557, 699
Mly113I	GGCGCC	1 cut(s)	542
MlyI	GAGTC	2 cut(s)	290, 719
MroXI	GAANNNNTTC	2 cut(s)	147, 875
MseI	TTAA	4 cut(s)	381, 528, 549, 827
MspI	CCGG	1 cut(s)	188
MunI	CAATTG	2 cut(s)	509, 666
Mva1269I	GAATGC	2 cut(s)	469, 883
MwoI	GCNNNNNNNGC	3 cut(s)	11, 251, 791
NarI	GGCGCC	1 cut(s)	542
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	2 cut(s)	83, 766
NlaIII	CATG	2 cut(s)	143, 344
NlaIV	GGNNCC	2 cut(s)	543, 661
NmuCI	GTSAC	2 cut(s)	364, 739
NspI	RCATGY	1 cut(s)	344
PaeR7I	CTCGAG	1 cut(s)	131
PciI	ACATGT	1 cut(s)	340
PcsI	WCGNNNNNNNCGW	1 cut(s)	682
PctI	GAATGC	2 cut(s)	469, 883
PdmI	GAANNNNTTC	2 cut(s)	147, 875
PfeI	GAWTC	1 cut(s)	876
PkrI	GCNGC	3 cut(s)	16, 628, 796
PleI	GAGTC	2 cut(s)	290, 719
PluTI	GGCGCC	1 cut(s)	545
PpsI	GAGTC	2 cut(s)	290, 719
Ppu21I	YACGTR	1 cut(s)	686
PscI	ACATGT	1 cut(s)	340
Psp124BI	GAGCTC	1 cut(s)	699
Psp1406I	AACGTT	1 cut(s)	676
PspN4I	GGNNCC	2 cut(s)	543, 661
PstNI	CAGNNNCTG	1 cut(s)	800
PsuI	RGATCY	1 cut(s)	83
RsaI	GTAC	4 cut(s)	661, 688, 705, 915
RsaNI	GTAC	4 cut(s)	660, 687, 704, 914
SacI	GAGCTC	1 cut(s)	699
SaqAI	TTAA	4 cut(s)	381, 528, 549, 827
SatI	GCNGC	3 cut(s)	15, 627, 795
Sau3AI	GATC	2 cut(s)	83, 766
SchI	GAGTC	2 cut(s)	290, 719
SduI	GDGCHC	2 cut(s)	557, 699
SetI	ASST	9 cut(s)	122, 247, 312, 381, 661, 665, 679, 688, 699
SfaNI	GCATC	3 cut(s)	19, 75, 806
SfcI	CTRYAG	1 cut(s)	654
SfoI	GGCGCC	1 cut(s)	543
Sfr274I	CTCGAG	1 cut(s)	131
SlaI	CTCGAG	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	121, 131
SmoI	CTYRAG	2 cut(s)	121, 131
SsiI	CCGC	1 cut(s)	445
SspDI	GGCGCC	1 cut(s)	541
SspMI	CTAG	3 cut(s)	858, 921, 928
SstI	GAGCTC	1 cut(s)	699
TaaI	ACNGT	6 cut(s)	23, 559, 585, 721, 867, 918
TaiI	ACGT	2 cut(s)	679, 688
TaqI	TCGA	3 cut(s)	132, 299, 748
TaqII	GACCGA	1 cut(s)	194
TatI	WGTACW	1 cut(s)	913
TfiI	GAWTC	1 cut(s)	876
Tru1I	TTAA	4 cut(s)	381, 528, 549, 827
Tru9I	TTAA	4 cut(s)	381, 528, 549, 827
TscAI	CASTG	3 cut(s)	787, 823, 872
TseFI	GTSAC	2 cut(s)	364, 739
TseI	GCWGC	3 cut(s)	14, 626, 794
Tsp45I	GTSAC	2 cut(s)	364, 739
TspDTI	ATGAA	5 cut(s)	156, 272, 276, 296, 519
TspGWI	ACGGA	1 cut(s)	764
TspRI	CASTG	3 cut(s)	787, 823, 872
VneI	GTGCAC	1 cut(s)	553
XapI	RAATTY	2 cut(s)	270, 404
XbaI	TCTAGA	1 cut(s)	920
XceI	RCATGY	1 cut(s)	344
XhoI	CTCGAG	1 cut(s)	131
XmnI	GAANNNNTTC	2 cut(s)	147, 875
XspI	CTAG	3 cut(s)	858, 921, 928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.