Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018216.1

Orthogroup ID

OG0001310

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 364

Gene Structure 364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018216.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 364 bp

cacagttttccctctgattcggaaccaacggtttgaggatgttgccaaggacatttccaagtcattgactgctgctggcatctcgcataaaatagatactaccggtacctcgattgggaaacgttatgcacgtactgatgagctcggtgtaccctttgcaatcacggttgattctacatcctcggtcacaattcgagaaagagacagcaaagatcaaatccgtgttagtgtgaagaaggcagtatctgttgtgaaggagctcagtgaggggttgaggacttgggaagatttgtggtggtcacctagtcaacggtggaagagattctggctttcctgcttcagatttatattgtctagaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

120

Amino Acids

13.81

Weight (kDa)

10.0

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29880
fragaria_vesca	FvH4_4g22441 FvH4_4g22450 FvH4_4g22450 FvH4_4g22610 FvH4_4g22610
malus_domestica	MD13G1131000.v1.1 MD13G1145800.v1.1 MD16G1141200.v1.1
prunus_persica	Prupe.1G214600_v2.0.a1
pyrus_communis	pycom13g11430 pycom13g12530 pycom16g11160 pycom16g11170
rosa_chinensis	RchiOBHm_Chr1g0361881 RchiOBHm_Chr4g0428711 RchiOBHm_Chr4g0428851
rosa_laevigata	RLG00000007120 RLG00000007133 RLG00000027689 RLG00000027690 RLG00000027694
rosa_multiflora	Rmu_co8208336.1_g000001 Rmu_co8210234.1_g000001 Rmu_sc0003316.1_g000006 Rmu_sc0008612.1_g000003 Rmu_sc0018216.1_g000001 Rmu_ssc0000124.1_g000013
rosa_roxburghii	Rroxscaffold_4G00294630 Rroxscaffold_5G00370530
rosa_rugosa	Rorug01G0292100 Rorug04G0227400 Rorug04G0227500 Rorug04G0229700
rosa_samantha	Rh1AG302800 Rh1BG265900 Rh1BG266000 Rh1CG284000 Rh1DG295900 Rh1DG296000 Rh4AG284700 Rh4AG284900 Rh4AG286400 Rh4BG290700 Rh4BG290900 Rh4BG292200 Rh4CG308200 Rh4DG288200 Rh4DG289400
rosa_wichuraiana	Rw0G020620 Rw1G026830 Rw4G024720 Rw4G024830 Rw7G040280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	105
AccB1I	GGYRCC	1 cut(s)	105
AclI	AACGTT	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	323
AfaI	GTAC	3 cut(s)	107, 134, 151
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgeI	ACCGGT	1 cut(s)	102
AluBI	AGCT	2 cut(s)	143, 260
AluI	AGCT	2 cut(s)	143, 260
Alw21I	GWGCWC	2 cut(s)	145, 262
Alw26I	GTCTC	1 cut(s)	196
AlwNI	CAGNNNCTG	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	72
AsiGI	ACCGGT	1 cut(s)	102
Asp700I	GAANNNNTTC	1 cut(s)	321
Asp718I	GGTACC	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	105
BanII	GRGCYC	2 cut(s)	145, 262
Bbv12I	GWGCWC	2 cut(s)	145, 262
BbvI	GCAGC	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	2 cut(s)	304, 355
BisI	GCNGC	1 cut(s)	73
BlsI	GCNGC	1 cut(s)	74
BmiI	GGNNCC	2 cut(s)	24, 107
BmsI	GCATC	1 cut(s)	88
BsaAI	YACGTR	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	46, 181
BsaWI	WCCGGW	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse118I	RCCGGY	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	46, 181
BseGI	GGATG	2 cut(s)	44, 177
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	59
BshNI	GGYRCC	1 cut(s)	105
BshTI	ACCGGT	1 cut(s)	102
BsiHKAI	GWGCWC	2 cut(s)	145, 262
BsiSI	CCGG	1 cut(s)	103
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	196
Bsp1286I	GDGCHC	2 cut(s)	145, 262
Bsp143I	GATC	1 cut(s)	212
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	24, 107
BspT107I	GGYRCC	1 cut(s)	105
BsrFI	RCCGGY	1 cut(s)	102
BssAI	RCCGGY	1 cut(s)	102
BssECI	CCNNGG	2 cut(s)	46, 181
BssMI	GATC	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	46
Bst4CI	ACNGT	4 cut(s)	5, 31, 167, 313
Bst6I	CTCTTC	1 cut(s)	312
BstBAI	YACGTR	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	1 cut(s)	261
BstEII	GGTNACC	1 cut(s)	298
BstF5I	GGATG	2 cut(s)	44, 177
BstKTI	GATC	1 cut(s)	215
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	1 cut(s)	212
BstPI	GGTNACC	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	59
BtsCI	GGATG	2 cut(s)	44, 177
BtsIMutI	CAGTG	1 cut(s)	269
Cac8I	GCNNGC	1 cut(s)	77
CaiI	CAGNNNCTG	1 cut(s)	246
Cfr10I	RCCGGY	1 cut(s)	102
Csp6I	GTAC	3 cut(s)	106, 133, 150
CspAI	ACCGGT	1 cut(s)	102
CviJI	RGCY	3 cut(s)	143, 260, 329
CviKI_1	RGCY	3 cut(s)	143, 260, 329
CviQI	GTAC	3 cut(s)	106, 133, 150
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	1 cut(s)	214
DpnII	GATC	1 cut(s)	212
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Ecl136II	GAGCTC	2 cut(s)	143, 260
Eco130I	CCWWGG	1 cut(s)	46
Eco24I	GRGCYC	2 cut(s)	145, 262
Eco53kI	GAGCTC	2 cut(s)	143, 260
Eco57I	CTGAAG	1 cut(s)	323
Eco91I	GGTNACC	1 cut(s)	298
EcoICRI	GAGCTC	2 cut(s)	143, 260
EcoO65I	GGTNACC	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	46
EcoT38I	GRGCYC	2 cut(s)	145, 262
ErhI	CCWWGG	1 cut(s)	46
FaiI	YATR	3 cut(s)	88, 127, 348
Fnu4HI	GCNGC	1 cut(s)	73
FokI	GGATG	2 cut(s)	51, 164
FriOI	GRGCYC	2 cut(s)	145, 262
Fsp4HI	GCNGC	1 cut(s)	73
FspBI	CTAG	2 cut(s)	304, 355
GluI	GCNGC	1 cut(s)	73
HapII	CCGG	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HinfI	GANTC	3 cut(s)	17, 171, 322
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	2 cut(s)	150, 309
Hpy188I	TCNGA	3 cut(s)	16, 22, 342
Hpy188III	TCNNGA	2 cut(s)	195, 355
Hpy8I	GTNNAC	2 cut(s)	150, 309
HpyAV	CCTTC	2 cut(s)	230, 248
HpyCH4III	ACNGT	4 cut(s)	5, 31, 167, 313
HpyCH4IV	ACGT	2 cut(s)	122, 131
HpyCH4V	TGCA	2 cut(s)	129, 159
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	2 cut(s)	122, 131
KpnI	GGTACC	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	212
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	4 cut(s)	61, 116, 311, 347
Lsp1109I	GCAGC	1 cut(s)	59
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	2 cut(s)	304, 355
MaeII	ACGT	2 cut(s)	122, 131
MaeIII	GTNAC	2 cut(s)	185, 298
MalI	GATC	1 cut(s)	214
MboI	GATC	1 cut(s)	212
MboII	GAAGA	3 cut(s)	245, 297, 329
MhlI	GDGCHC	2 cut(s)	145, 262
MluCI	AATT	1 cut(s)	190
MnlI	CCTC	6 cut(s)	22, 29, 119, 191, 260, 268
MroXI	GAANNNNTTC	1 cut(s)	321
MspI	CCGG	1 cut(s)	103
NdeII	GATC	1 cut(s)	212
NlaIV	GGNNCC	2 cut(s)	24, 107
NmuCI	GTSAC	2 cut(s)	185, 298
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	3 cut(s)	17, 171, 322
PinAI	ACCGGT	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	74
Ppu21I	YACGTR	1 cut(s)	132
Psp124BI	GAGCTC	2 cut(s)	145, 262
Psp1406I	AACGTT	1 cut(s)	122
PspEI	GGTNACC	1 cut(s)	298
PspN4I	GGNNCC	2 cut(s)	24, 107
PstNI	CAGNNNCTG	1 cut(s)	246
RsaI	GTAC	3 cut(s)	107, 134, 151
RsaNI	GTAC	3 cut(s)	106, 133, 150
SacI	GAGCTC	2 cut(s)	145, 262
SatI	GCNGC	1 cut(s)	73
Sau3AI	GATC	1 cut(s)	212
SduI	GDGCHC	2 cut(s)	145, 262
SetI	ASST	6 cut(s)	111, 125, 134, 145, 262, 305
SfaNI	GCATC	1 cut(s)	88
Sse9I	AATT	1 cut(s)	190
SspMI	CTAG	2 cut(s)	304, 355
SstI	GAGCTC	2 cut(s)	145, 262
StyI	CCWWGG	1 cut(s)	46
TaaI	ACNGT	4 cut(s)	5, 31, 167, 313
TaiI	ACGT	2 cut(s)	125, 134
TaqI	TCGA	2 cut(s)	111, 194
TaqII	GACCGA	1 cut(s)	173
TasI	AATT	1 cut(s)	190
TfiI	GAWTC	3 cut(s)	17, 171, 322
TscAI	CASTG	1 cut(s)	269
TseFI	GTSAC	2 cut(s)	185, 298
TseI	GCWGC	1 cut(s)	72
Tsp45I	GTSAC	2 cut(s)	185, 298
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	269
XbaI	TCTAGA	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	2 cut(s)	304, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.