Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001310

Physical Location & Seq

Genomic Coordinates Reverse (-)

51057461 .. 51061164

Gene Structure 3704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG289400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2091 bp

ATGGCCGCTTCTTCCTCCTCCGAGGACTCCCTCCGCAAAGCCCTCTCCGAGAAGCTCTCGGAGGTCGAGAGCCAGGGCAACCAGGTCCGTTCTCTGAAGAAATCCGGCGCCGCCAAGACGGAACTTGACGCCGCCATTGAGGCCTTGAACGCGCTCAAGCTTGAGAAGGCGTCGATCGAGAAAGACCTCCAAGCCACCATCAGCGGCGACGACGGCGGCTCCGTTAACAAGGAGGCGTTACGTCAGGCTGTGGTGAATACTCTGGAGCGCCGTTTGTTTTATATTCCCGCTTTCAAGATTTACGGCGGCGTTGCTGGCCTCTACGACTACGGGCCTCCTGGTTGCGCCGTCAAGTCCAATGTCCTAGGGTTTTGGCGTCAGCATTTTGTGCTTGAAGAGAACATGTTGGAAGTGGACTGCCCTTGTGTCACACCTGAGGTGGTTTTGAAAGCATCGGGTCATGTGGAGAAATTCACCGATCTTATGGTTAAGGATGAGGAGTCTGGGATGTGCTACAGAGCTGATCACTTGCTCAAGGATTACTGTAAAGATAAGCTTGAAAAGGACCTCAGAATTACTTCAGAGATGGCAATGGAACTGAAAGAAGTACTTTCCAAATTAGATGTCCTCTCCGCTGAAGAGCTGGGTGCATGTATAAAGAAATATGGTATTACAGCCCCTGACACAAAGAACACTCTCTCGGATCCTTATCCATTCAACCTGATGTTTCAAACATCAATTGGTCCTTCTGGTGTGAGCACCGGGTATATGCGTCCAGAAACTGCCCAAGGCATATTTGTGAATTTTAGGGACTTGTACTATTACAATGGGAACAAACTCCCTTTTGCTGCAGCCCAAATTGGCCAGGCTTTTAGAAATGAGATATCACCTCGCCAAGGTCTTTTGAGAGTCCGTGAGTTTACACTTGCAGAGATTGAGCACTTTGTTGACCCCGAAGACAAATCTCACCCAAAATTCTCTGATGTTGCACATTTGGAGTTTCTGATGTTCCCAAGGGATGAACAGAAGCCTGGCCTGTCTGCAAGGATAATCTCACTAGGTGAAGCTGTATCTTCTAAGGATTCTAAAATTGTCGACAACGAAACCCTTGGGTACTTTATTGGGAGAGTATACCTCTTCCTCACTCATCTGGGTATAGACAAGAACCGTTTAAGGTTCCGGCAGCACCTTGCAAATGAAATGGCTCACTATGCCCAGGACTGTTGGGATGCTGAGATTGAGACTTCATATGGCTGGATTGAGTGCGTGGGTATTGCAGATAGATCTGCGTATGACTTGAAGGCTCATTCGGAGAAAAGTAGAGTTGATCTTGAGGCACAGGAAAAATATTCCGAACCAAGAGAAGTTGAGAAATTGGTTATATCTCCTGTAAAGAAAGCGATTGGTCTTGCTTTCAAGGGGGACCAAAAGAAAGTACTTGAAGCTTTGGAGGCCATGAAAGAAGAAGAAGCTTTGAAAATGAAGACTGATTTAGAGTCAAAAGGGGAGGTAGAGTTTTATGTCTGCACTCTAGAGAAGAAAGTATCTATTAATTCAAGTATGGTAACAATTTCAAAGGAGAAAAAGAAAGAACACCAGAGAGTATTCACGCCCTCGGTAATTGAGCCTTCTTTTGGCATCGGTCGGATAATATATTGCCTCTATGAGCACTCATACTACATGAGGCCAAGTAAAGATGGAAATGAACAGTTTAATGTGTTCCGTTTCCCCCCTCTTGTGGCACCCATCAAGTGCACAGTTTTCCCGTTGGTTCAGAAGCAAGAGTATGAGGAAGTTTCTAAAGTCATTTCTAAATCACTGACTGCATCTGGGATATCACATAAAATTGACATCACAGGTACCTCAATTGGGAAACGATACGCACGGACTGATGAACTGGGTGTACCGTTTGCAATCACAGTTGATTCCGTATCTTCTGTGACAATCCGGGAACGAGACAGCAAGGATCAGATCCGGGTTGATGTGAGTGAGGCAGCGTCTGTTGTCAAGGATATAGCTGAGGGAGTGAGGACATGGGCGGATGTGTGGTCGGCTTTCCCACACCATTCTTCTGGCTCAGCAGACGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

696

Amino Acids

77.9

Weight (kDa)

5.66

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHEP-TRS	PF00458	20 - 63	2.7e-09	WHEP-TRS domain
tRNA-synt_2b	PF00587	256 - 557	1.3e-10	tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon	PF03129	584 - 671	1.6e-17	Anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29880
fragaria_vesca	FvH4_4g22441 FvH4_4g22450 FvH4_4g22450 FvH4_4g22610 FvH4_4g22610
malus_domestica	MD13G1131000.v1.1 MD13G1145800.v1.1 MD16G1141200.v1.1
prunus_persica	Prupe.1G214600_v2.0.a1
pyrus_communis	pycom13g11430 pycom13g12530 pycom16g11160 pycom16g11170
rosa_chinensis	RchiOBHm_Chr1g0361881 RchiOBHm_Chr4g0428711 RchiOBHm_Chr4g0428851
rosa_laevigata	RLG00000007120 RLG00000007133 RLG00000027689 RLG00000027690 RLG00000027694
rosa_multiflora	Rmu_co8208336.1_g000001 Rmu_co8210234.1_g000001 Rmu_sc0003316.1_g000006 Rmu_sc0008612.1_g000003 Rmu_sc0018216.1_g000001 Rmu_ssc0000124.1_g000013
rosa_roxburghii	Rroxscaffold_4G00294630 Rroxscaffold_5G00370530
rosa_rugosa	Rorug01G0292100 Rorug04G0227400 Rorug04G0227500 Rorug04G0229700
rosa_samantha	Rh1AG302800 Rh1BG265900 Rh1BG266000 Rh1CG284000 Rh1DG295900 Rh1DG296000 Rh4AG284700 Rh4AG284900 Rh4AG286400 Rh4BG290700 Rh4BG290900 Rh4BG292200 Rh4CG308200 Rh4DG288200 Rh4DG289400
rosa_wichuraiana	Rw0G020620 Rw1G026830 Rw4G024720 Rw4G024830 Rw7G040280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1859
AccB1I	GGYRCC	3 cut(s)	107, 1741, 1859
AccI	GTMKAC	2 cut(s)	1095, 1131
AccII	CGCG	1 cut(s)	152
AclWI	GGATC	4 cut(s)	698, 711, 1966, 1974
AcoI	YGGCCR	2 cut(s)	3, 862
AcsI	RAATTY	3 cut(s)	470, 802, 974
AcuI	CTGAAG	3 cut(s)	116, 564, 657
AcyI	GRCGYC	4 cut(s)	108, 129, 170, 376
AdeI	CACNNNGTG	1 cut(s)	1061
AfaI	GTAC	6 cut(s)	609, 818, 1115, 1437, 1861, 1905
AfiI	CCNNNNNNNGG	4 cut(s)	896, 1634, 1738, 1869
AflIII	ACRYGT	1 cut(s)	402
AjnI	CCWGG	6 cut(s)	72, 81, 337, 864, 1030, 1215
AluBI	AGCT	9 cut(s)	55, 160, 521, 556, 643, 1067, 1445, 1472, 2018
AluI	AGCT	9 cut(s)	55, 160, 521, 556, 643, 1067, 1445, 1472, 2018
Alw21I	GWGCWC	4 cut(s)	761, 942, 1671, 1757
Alw26I	GTCTC	2 cut(s)	1235, 1950
Alw44I	GTGCAC	1 cut(s)	1753
AlwI	GGATC	4 cut(s)	698, 711, 1966, 1974
AlwNI	CAGNNNCTG	3 cut(s)	680, 782, 2000
AoxI	GGCC	8 cut(s)	3, 141, 316, 332, 862, 1033, 1452, 1685
ApaLI	GTGCAC	1 cut(s)	1753
ApeKI	GCWGC	4 cut(s)	848, 851, 1183, 1994
ApoI	RAATTY	3 cut(s)	470, 802, 974
ArsI	GACNNNNNNTTYG	2 cut(s)	609, 641
AseI	ATTAAT	1 cut(s)	1551
Asp700I	GAANNNNTTC	1 cut(s)	577
Asp718I	GGTACC	1 cut(s)	1859
AspA2I	CCTAGG	1 cut(s)	364
AspLEI	GCGC	4 cut(s)	110, 154, 270, 347
AspS9I	GGNCC	5 cut(s)	85, 332, 565, 743, 1423
AsuC2I	CCSGG	3 cut(s)	763, 1949, 1976
AsuHPI	GGTGA	5 cut(s)	265, 466, 879, 959, 1073
AvaII	GGWCC	4 cut(s)	85, 565, 743, 1423
AvrII	CCTAGG	1 cut(s)	364
AxyI	CCTNAGG	1 cut(s)	435
BaeGI	GKGCMC	1 cut(s)	1757
BalI	TGGCCA	1 cut(s)	864
BamHI	GGATCC	1 cut(s)	703
BanI	GGYRCC	3 cut(s)	107, 1741, 1859
BbsI	GAAGAC	2 cut(s)	963, 1490
Bbv12I	GWGCWC	4 cut(s)	761, 942, 1671, 1757
BbvCI	CCTCAGC	1 cut(s)	2019
BbvI	GCAGC	4 cut(s)	835, 863, 1195, 2006
BccI	CCATC	4 cut(s)	206, 580, 1691, 1754
BceAI	ACGGC	4 cut(s)	229, 255, 319, 332
BciT130I	CCWGG	6 cut(s)	74, 83, 339, 866, 1032, 1217
BclI	TGATCA	1 cut(s)	523
BcnI	CCSGG	3 cut(s)	763, 1949, 1976
BcoDI	GTCTC	2 cut(s)	1235, 1950
BfaI	CTAG	3 cut(s)	365, 1058, 1532
BfmI	CTRYAG	2 cut(s)	514, 849
BfoI	RGCGCY	2 cut(s)	111, 271
BglI	GCCNNNNNGGC	1 cut(s)	140
BglII	AGATCT	1 cut(s)	1283
BlnI	CCTAGG	1 cut(s)	364
BlpI	GCTNAGC	1 cut(s)	2077
BmcAI	AGTACT	2 cut(s)	609, 1437
Bme1390I	CCNGG	9 cut(s)	74, 83, 339, 763, 866, 1032, 1217, 1949, 1976
Bme18I	GGWCC	4 cut(s)	85, 565, 743, 1423
BmgT120I	GGNCC	5 cut(s)	85, 332, 565, 743, 1423
BmiI	GGNNCC	7 cut(s)	109, 220, 705, 1178, 1424, 1743, 1861
BmrFI	CCNGG	9 cut(s)	74, 83, 339, 763, 866, 1032, 1217, 1949, 1976
BmrI	ACTGGG	1 cut(s)	1907
BmsI	GCATC	4 cut(s)	461, 1219, 1647, 1835
BmuI	ACTGGG	1 cut(s)	1907
BpiI	GAAGAC	2 cut(s)	963, 1490
BplI	GAGNNNNNCTC	4 cut(s)	41, 73, 1119, 1151
BpmI	CTGGAG	1 cut(s)	284
Bpu10I	CCTNAGC	1 cut(s)	2019
Bpu1102I	GCTNAGC	1 cut(s)	2077
BpuEI	CTTGAG	4 cut(s)	140, 182, 518, 1352
BpuMI	CCSGG	3 cut(s)	763, 1949, 1976
BsaBI	GATNNNNATC	1 cut(s)	708
BsaHI	GRCGYC	4 cut(s)	108, 129, 170, 376
BsaJI	CCNNGG	9 cut(s)	21, 73, 364, 787, 895, 1013, 1108, 1215, 1614
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 1499, 1529
Bsc4I	CCNNNNNNNGG	4 cut(s)	896, 1634, 1738, 1869
Bse1I	ACTGG	1 cut(s)	1902
Bse21I	CCTNAGG	1 cut(s)	435
Bse3DI	GCAATG	1 cut(s)	597
Bse8I	GATNNNNATC	1 cut(s)	708
BseBI	CCWGG	6 cut(s)	74, 83, 339, 866, 1032, 1217
BseDI	CCNNGG	9 cut(s)	21, 73, 364, 787, 895, 1013, 1108, 1215, 1614
BseGI	GGATG	5 cut(s)	499, 513, 1024, 1234, 2047
BseJI	GATNNNNATC	1 cut(s)	708
BseLI	CCNNNNNNNGG	4 cut(s)	896, 1634, 1738, 1869
BseMI	GCAATG	1 cut(s)	597
BseMII	CTCAG	5 cut(s)	426, 583, 1224, 2010, 2091
BseNI	ACTGG	1 cut(s)	1902
BseRI	GAGGAG	2 cut(s)	7, 512
BseSI	GKGCMC	1 cut(s)	1757
BseXI	GCAGC	4 cut(s)	835, 863, 1195, 2006
BseYI	CCCAGC	1 cut(s)	643
BsgI	GTGCAG	1 cut(s)	1510
Bsh1236I	CGCG	1 cut(s)	152
Bsh1285I	CGRYCG	2 cut(s)	177, 1645
BshFI	GGCC	8 cut(s)	5, 143, 318, 334, 864, 1035, 1454, 1687
BshNI	GGYRCC	3 cut(s)	107, 1741, 1859
BsiEI	CGRYCG	2 cut(s)	177, 1645
BsiHKAI	GWGCWC	4 cut(s)	761, 942, 1671, 1757
BsiSI	CCGG	5 cut(s)	105, 762, 1180, 1948, 1975
BslFI	GGGAC	2 cut(s)	824, 1436
BslI	CCNNNNNNNGG	4 cut(s)	896, 1634, 1738, 1869
BsmAI	GTCTC	2 cut(s)	1235, 1950
BsmFI	GGGAC	2 cut(s)	824, 1436
BsnI	GGCC	8 cut(s)	5, 143, 318, 334, 864, 1035, 1454, 1687
Bsp1286I	GDGCHC	4 cut(s)	761, 942, 1671, 1757
Bsp143I	GATC	8 cut(s)	174, 478, 523, 703, 1283, 1327, 1966, 1971
Bsp1720I	GCTNAGC	1 cut(s)	2077
BspANI	GGCC	8 cut(s)	5, 143, 318, 334, 864, 1035, 1454, 1687
BspCNI	CTCAG	5 cut(s)	427, 582, 1225, 2011, 2090
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	7 cut(s)	109, 220, 705, 1178, 1424, 1743, 1861
BspMAI	CTGCAG	1 cut(s)	853
BspPI	GGATC	4 cut(s)	698, 711, 1966, 1974
BspQI	GCTCTTC	1 cut(s)	633
BspT107I	GGYRCC	3 cut(s)	107, 1741, 1859
BsrDI	GCAATG	1 cut(s)	597
BsrI	ACTGG	1 cut(s)	1902
BssECI	CCNNGG	9 cut(s)	21, 73, 364, 787, 895, 1013, 1108, 1215, 1614
BssMI	GATC	8 cut(s)	174, 478, 523, 703, 1283, 1327, 1966, 1971
BssNAI	GTATAC	1 cut(s)	1132
BssNI	GRCGYC	4 cut(s)	108, 129, 170, 376
BssT1I	CCWWGG	5 cut(s)	364, 787, 895, 1013, 1108
Bst1107I	GTATAC	1 cut(s)	1132
Bst2UI	CCWGG	6 cut(s)	74, 83, 339, 866, 1032, 1217
Bst4CI	ACNGT	7 cut(s)	545, 1169, 1223, 1710, 1759, 1908, 1921
Bst6I	CTCTTC	3 cut(s)	390, 633, 1142
BstACI	GRCGYC	4 cut(s)	108, 129, 170, 376
BstAPI	GCANNNNNTGC	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	6 cut(s)	435, 569, 1077, 1233, 2019, 2077
BstENI	CCTNNNNNAGG	1 cut(s)	894
BstF5I	GGATG	5 cut(s)	499, 513, 1024, 1234, 2047
BstFNI	CGCG	1 cut(s)	152
BstH2I	RGCGCY	2 cut(s)	111, 271
BstHHI	GCGC	4 cut(s)	110, 154, 270, 347
BstKTI	GATC	8 cut(s)	177, 481, 526, 706, 1286, 1330, 1969, 1974
BstMAI	GTCTC	2 cut(s)	1235, 1950
BstMBI	GATC	8 cut(s)	174, 478, 523, 703, 1283, 1327, 1966, 1971
BstMCI	CGRYCG	2 cut(s)	177, 1645
BstMWI	GCNNNNNNNGC	7 cut(s)	140, 149, 213, 315, 388, 1211, 1451
BstNI	CCWGG	6 cut(s)	74, 83, 339, 866, 1032, 1217
BstNSI	RCATGY	2 cut(s)	406, 654
BstSCI	CCNGG	9 cut(s)	72, 81, 337, 761, 864, 1030, 1215, 1947, 1974
BstSFI	CTRYAG	2 cut(s)	514, 849
BstSLI	GKGCMC	1 cut(s)	1757
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	4 cut(s)	835, 863, 1195, 2006
BstV2I	GAAGAC	2 cut(s)	963, 1490
BstX2I	RGATCY	3 cut(s)	703, 1283, 1971
BstXI	CCANNNNNNTGG	1 cut(s)	2072
BstYI	RGATCY	3 cut(s)	703, 1283, 1971
BstZ17I	GTATAC	1 cut(s)	1132
Bsu36I	CCTNAGG	1 cut(s)	435
BsuRI	GGCC	8 cut(s)	5, 143, 318, 334, 864, 1035, 1454, 1687
BtsCI	GGATG	5 cut(s)	499, 513, 1024, 1234, 2047
BtsIMutI	CAGTG	1 cut(s)	1817
Cac8I	GCNNGC	1 cut(s)	316
CaiI	CAGNNNCTG	3 cut(s)	680, 782, 2000
CfoI	GCGC	4 cut(s)	110, 154, 270, 347
Cfr13I	GGNCC	5 cut(s)	85, 332, 565, 743, 1423
CseI	GACGC	5 cut(s)	137, 159, 365, 761, 1986
CsiI	ACCWGGT	1 cut(s)	81
Csp6I	GTAC	6 cut(s)	608, 817, 1114, 1436, 1860, 1904
CviAII	CATG	6 cut(s)	403, 461, 651, 1456, 1681, 2034
CviQI	GTAC	6 cut(s)	608, 817, 1114, 1436, 1860, 1904
DdeI	CTNAG	6 cut(s)	435, 569, 1077, 1233, 2019, 2077
DinI	GGCGCC	1 cut(s)	109
DpnI	GATC	8 cut(s)	176, 480, 525, 705, 1285, 1329, 1968, 1973
DpnII	GATC	8 cut(s)	174, 478, 523, 703, 1283, 1327, 1966, 1971
DraIII	CACNNNGTG	1 cut(s)	1061
EaeI	YGGCCR	2 cut(s)	3, 862
Eam1104I	CTCTTC	3 cut(s)	390, 633, 1142
EarI	CTCTTC	3 cut(s)	390, 633, 1142
EciI	GGCGGA	1 cut(s)	2054
Eco130I	CCWWGG	5 cut(s)	364, 787, 895, 1013, 1108
Eco147I	AGGCCT	1 cut(s)	143
Eco32I	GATATC	2 cut(s)	885, 1836
Eco47I	GGWCC	4 cut(s)	85, 565, 743, 1423
Eco57I	CTGAAG	3 cut(s)	116, 564, 657
Eco81I	CCTNAGG	1 cut(s)	435
EcoNI	CCTNNNNNAGG	1 cut(s)	894
EcoO109I	RGGNCCY	1 cut(s)	565
EcoRII	CCWGG	6 cut(s)	72, 81, 337, 864, 1030, 1215
EcoRV	GATATC	2 cut(s)	885, 1836
EcoT14I	CCWWGG	5 cut(s)	364, 787, 895, 1013, 1108
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
ErhI	CCWWGG	5 cut(s)	364, 787, 895, 1013, 1108
FaeI	CATG	6 cut(s)	406, 464, 654, 1459, 1684, 2037
FalI	AAGNNNNNCTT	4 cut(s)	540, 572, 594, 626
FaqI	GGGAC	2 cut(s)	824, 1436
FatI	CATG	6 cut(s)	402, 460, 650, 1455, 1680, 2033
FauI	CCCGC	1 cut(s)	295
FauNDI	CATATG	1 cut(s)	1249
FbaI	TGATCA	1 cut(s)	523
FblI	GTMKAC	2 cut(s)	1095, 1131
FokI	GGATG	5 cut(s)	506, 520, 1031, 1241, 2054
FspBI	CTAG	3 cut(s)	365, 1058, 1532
GlaI	GCGC	4 cut(s)	109, 153, 269, 346
GsaI	CCCAGC	1 cut(s)	647
GsuI	CTGGAG	1 cut(s)	284
HaeII	RGCGCY	2 cut(s)	111, 271
HaeIII	GGCC	8 cut(s)	5, 143, 318, 334, 864, 1035, 1454, 1687
HapII	CCGG	5 cut(s)	105, 762, 1180, 1948, 1975
HgaI	GACGC	5 cut(s)	137, 159, 365, 761, 1986
HhaI	GCGC	4 cut(s)	110, 154, 270, 347
Hin1I	GRCGYC	4 cut(s)	108, 129, 170, 376
Hin1II	CATG	6 cut(s)	406, 464, 654, 1459, 1684, 2037
Hin6I	GCGC	4 cut(s)	108, 152, 268, 345
HinP1I	GCGC	4 cut(s)	108, 152, 268, 345
HincII	GTYRAC	3 cut(s)	226, 949, 1096
HindII	GTYRAC	3 cut(s)	226, 949, 1096
HindIII	AAGCTT	4 cut(s)	158, 554, 1443, 1470
HinfI	GANTC	6 cut(s)	26, 500, 909, 1082, 1496, 1925
HpaI	GTTAAC	1 cut(s)	226
HpaII	CCGG	5 cut(s)	105, 762, 1180, 1948, 1975
HphI	GGTGA	5 cut(s)	265, 466, 879, 959, 1073
Hpy166II	GTNNAC	8 cut(s)	226, 415, 921, 949, 1096, 1132, 1755, 1904
Hpy188III	TCNNGA	7 cut(s)	67, 178, 263, 295, 776, 1331, 1532
Hpy8I	GTNNAC	8 cut(s)	226, 415, 921, 949, 1096, 1132, 1755, 1904
Hpy99I	CGWCG	3 cut(s)	175, 212, 215
HpyAV	CCTTC	4 cut(s)	160, 756, 1294, 1638
HpyCH4III	ACNGT	7 cut(s)	545, 1169, 1223, 1710, 1759, 1908, 1921
HpyCH4IV	ACGT	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	7 cut(s)	140, 149, 213, 315, 388, 1211, 1451
HpyF3I	CTNAG	6 cut(s)	435, 569, 1077, 1233, 2019, 2077
HpySE526I	ACGT	1 cut(s)	241
Hsp92I	GRCGYC	4 cut(s)	108, 129, 170, 376
Hsp92II	CATG	6 cut(s)	406, 464, 654, 1459, 1684, 2037
HspAI	GCGC	4 cut(s)	108, 152, 268, 345
KasI	GGCGCC	1 cut(s)	107
KpnI	GGTACC	1 cut(s)	1863
Ksp22I	TGATCA	1 cut(s)	523
KspAI	GTTAAC	1 cut(s)	226
Kzo9I	GATC	8 cut(s)	174, 478, 523, 703, 1283, 1327, 1966, 1971
LguI	GCTCTTC	1 cut(s)	633
LmnI	GCTCC	2 cut(s)	224, 265
Lsp1109I	GCAGC	4 cut(s)	835, 863, 1195, 2006
LweI	GCATC	4 cut(s)	461, 1219, 1647, 1835
MabI	ACCWGGT	1 cut(s)	81
MaeI	CTAG	3 cut(s)	365, 1058, 1532
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	4 cut(s)	237, 427, 1564, 1939
MalI	GATC	8 cut(s)	176, 480, 525, 705, 1285, 1329, 1968, 1973
MboI	GATC	8 cut(s)	174, 478, 523, 703, 1283, 1327, 1966, 1971
MfeI	CAATTG	2 cut(s)	738, 1866
MflI	RGATCY	3 cut(s)	703, 1283, 1971
MhlI	GDGCHC	4 cut(s)	761, 942, 1671, 1757
MlsI	TGGCCA	1 cut(s)	864
MluNI	TGGCCA	1 cut(s)	864
Mly113I	GGCGCC	1 cut(s)	108
MlyI	GAGTC	4 cut(s)	20, 509, 918, 1505
MmeI	TCCRAC	2 cut(s)	387, 1625
Mox20I	TGGCCA	1 cut(s)	864
MroXI	GAANNNNTTC	1 cut(s)	577
MscI	TGGCCA	1 cut(s)	864
MseI	TTAA	5 cut(s)	225, 489, 1172, 1551, 1713
MslI	CAYNNNNRTG	1 cut(s)	797
Msp20I	TGGCCA	1 cut(s)	864
MspA1I	CMGCKG	2 cut(s)	204, 635
MspI	CCGG	5 cut(s)	105, 762, 1180, 1948, 1975
MspR9I	CCNGG	9 cut(s)	74, 83, 339, 763, 866, 1032, 1217, 1949, 1976
MunI	CAATTG	2 cut(s)	738, 1866
MvaI	CCWGG	6 cut(s)	74, 83, 339, 866, 1032, 1217
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	7 cut(s)	140, 149, 213, 315, 388, 1211, 1451
NarI	GGCGCC	1 cut(s)	108
NciI	CCSGG	3 cut(s)	763, 1949, 1976
NdeI	CATATG	1 cut(s)	1249
NdeII	GATC	8 cut(s)	174, 478, 523, 703, 1283, 1327, 1966, 1971
NlaIII	CATG	6 cut(s)	406, 464, 654, 1459, 1684, 2037
NlaIV	GGNNCC	7 cut(s)	109, 220, 705, 1178, 1424, 1743, 1861
NmuCI	GTSAC	2 cut(s)	427, 1939
NspI	RCATGY	2 cut(s)	406, 654
PceI	AGGCCT	1 cut(s)	143
PciI	ACATGT	1 cut(s)	402
PciSI	GCTCTTC	1 cut(s)	633
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PdmI	GAANNNNTTC	1 cut(s)	577
PfeI	GAWTC	2 cut(s)	1082, 1925
PfoI	TCCNGGA	1 cut(s)	1947
Ple19I	CGATCG	1 cut(s)	177
PleI	GAGTC	4 cut(s)	20, 508, 917, 1504
PluTI	GGCGCC	1 cut(s)	111
PpsI	GAGTC	4 cut(s)	20, 508, 917, 1504
PpuMI	RGGWCCY	1 cut(s)	565
PscI	ACATGT	1 cut(s)	402
PshBI	ATTAAT	1 cut(s)	1551
Psp5II	RGGWCCY	1 cut(s)	565
Psp6I	CCWGG	6 cut(s)	72, 81, 337, 864, 1030, 1215
PspFI	CCCAGC	1 cut(s)	643
PspGI	CCWGG	6 cut(s)	72, 81, 337, 864, 1030, 1215
PspN4I	GGNNCC	7 cut(s)	109, 220, 705, 1178, 1424, 1743, 1861
PspPI	GGNCC	5 cut(s)	85, 332, 565, 743, 1423
PspPPI	RGGWCCY	1 cut(s)	565
PsrI	GAACNNNNNNTAC	2 cut(s)	1887, 1919
PstI	CTGCAG	1 cut(s)	853
PstNI	CAGNNNCTG	3 cut(s)	680, 782, 2000
PsuI	RGATCY	3 cut(s)	703, 1283, 1971
PvuI	CGATCG	1 cut(s)	177
RsaI	GTAC	6 cut(s)	609, 818, 1115, 1437, 1861, 1905
RsaNI	GTAC	6 cut(s)	608, 817, 1114, 1436, 1860, 1904
RseI	CAYNNNNRTG	1 cut(s)	797
SalI	GTCGAC	1 cut(s)	1094
SapI	GCTCTTC	1 cut(s)	633
SaqAI	TTAA	5 cut(s)	225, 489, 1172, 1551, 1713
Sau3AI	GATC	8 cut(s)	174, 478, 523, 703, 1283, 1327, 1966, 1971
Sau96I	GGNCC	5 cut(s)	85, 332, 565, 743, 1423
ScaI	AGTACT	2 cut(s)	609, 1437
SchI	GAGTC	4 cut(s)	20, 509, 918, 1505
ScrFI	CCNGG	9 cut(s)	74, 83, 339, 763, 866, 1032, 1217, 1949, 1976
SduI	GDGCHC	4 cut(s)	761, 942, 1671, 1757
SexAI	ACCWGGT	1 cut(s)	81
SfaNI	GCATC	4 cut(s)	461, 1219, 1647, 1835
SfcI	CTRYAG	2 cut(s)	514, 849
SfoI	GGCGCC	1 cut(s)	109
SinI	GGWCC	4 cut(s)	85, 565, 743, 1423
SmiMI	CAYNNNNRTG	1 cut(s)	797
SmlI	CTYRAG	4 cut(s)	155, 161, 533, 1331
SmoI	CTYRAG	4 cut(s)	155, 161, 533, 1331
SseBI	AGGCCT	1 cut(s)	143
SspDI	GGCGCC	1 cut(s)	107
SspI	AATATT	1 cut(s)	1349
SspMI	CTAG	3 cut(s)	365, 1058, 1532
StuI	AGGCCT	1 cut(s)	143
StyD4I	CCNGG	9 cut(s)	72, 81, 337, 761, 864, 1030, 1215, 1947, 1974
StyI	CCWWGG	5 cut(s)	364, 787, 895, 1013, 1108
TaaI	ACNGT	7 cut(s)	545, 1169, 1223, 1710, 1759, 1908, 1921
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	4 cut(s)	66, 173, 177, 1095
TaqII	GACCGA	1 cut(s)	1631
TatI	WGTACW	3 cut(s)	607, 816, 1435
TauI	GCSGC	6 cut(s)	8, 113, 134, 207, 219, 309
TfiI	GAWTC	2 cut(s)	1082, 1925
Tru1I	TTAA	5 cut(s)	225, 489, 1172, 1551, 1713
Tru9I	TTAA	5 cut(s)	225, 489, 1172, 1551, 1713
TscAI	CASTG	1 cut(s)	1824
TseFI	GTSAC	2 cut(s)	427, 1939
TseI	GCWGC	4 cut(s)	848, 851, 1183, 1994
Tsp45I	GTSAC	2 cut(s)	427, 1939
TspDTI	ATGAA	7 cut(s)	1035, 1212, 1236, 1472, 1496, 1719, 1908
TspGWI	ACGGA	7 cut(s)	77, 134, 211, 902, 1712, 1900, 1918
TspRI	CASTG	1 cut(s)	1824
VneI	GTGCAC	1 cut(s)	1753
VpaK11BI	GGWCC	4 cut(s)	85, 565, 743, 1423
VspI	ATTAAT	1 cut(s)	1551
XagI	CCTNNNNNAGG	1 cut(s)	894
XapI	RAATTY	3 cut(s)	470, 802, 974
XbaI	TCTAGA	1 cut(s)	1531
XceI	RCATGY	2 cut(s)	406, 654
XmaJI	CCTAGG	1 cut(s)	364
XmiI	GTMKAC	2 cut(s)	1095, 1131
XmnI	GAANNNNTTC	1 cut(s)	577
XspI	CTAG	3 cut(s)	365, 1058, 1532
ZrmI	AGTACT	2 cut(s)	609, 1437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.