Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001310

Physical Location & Seq

Genomic Coordinates Forward (+)

59961511 .. 59962010

Gene Structure 500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG284700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCAGCACTTTGTTCATGAAGAGAACATGTGGGAGATTGACTGCCCTTGCCTCACGCCAGAGGCTGTTTTGAAGGCATCTGGCCATGTAGATAAGTTCACTGATCTCATGGTTAAGGATGAGAAGAAAGGGACTTGCTACCGGGCTGATCACTTGGTCAAGGATTTCTGCAATAAGAAGCTTGAAGAGGACCGTCACATTAGTTCAGAGATGGCAATGGAGCTGAAAGAAGTGCTTTCGAAATTGGACGGTCTATCAGCTGAAGAGCTGGGTGCATGCATCAAGAAATATGGGATTACAGTCCCTGAAACAGATAACCATCCTCTCTCAGATCGTTATCCTTTCAAACATCAATTGGTCCGTCTGGTTCGAGCACTGGTTTCCTTCGCCCAGAAACTGCACAAGGCATATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

138

Amino Acids

15.9

Weight (kDa)

6.23

Isoelectric Point (pI)

27.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29880
fragaria_vesca	FvH4_4g22441 FvH4_4g22450 FvH4_4g22450 FvH4_4g22610 FvH4_4g22610
malus_domestica	MD13G1131000.v1.1 MD13G1145800.v1.1 MD16G1141200.v1.1
prunus_persica	Prupe.1G214600_v2.0.a1
pyrus_communis	pycom13g11430 pycom13g12530 pycom16g11160 pycom16g11170
rosa_chinensis	RchiOBHm_Chr1g0361881 RchiOBHm_Chr4g0428711 RchiOBHm_Chr4g0428851
rosa_laevigata	RLG00000007120 RLG00000007133 RLG00000027689 RLG00000027690 RLG00000027694
rosa_multiflora	Rmu_co8208336.1_g000001 Rmu_co8210234.1_g000001 Rmu_sc0003316.1_g000006 Rmu_sc0008612.1_g000003 Rmu_sc0018216.1_g000001 Rmu_ssc0000124.1_g000013
rosa_roxburghii	Rroxscaffold_4G00294630 Rroxscaffold_5G00370530
rosa_rugosa	Rorug01G0292100 Rorug04G0227400 Rorug04G0227500 Rorug04G0229700
rosa_samantha	Rh1AG302800 Rh1BG265900 Rh1BG266000 Rh1CG284000 Rh1DG295900 Rh1DG296000 Rh4AG284700 Rh4AG284900 Rh4AG286400 Rh4BG290700 Rh4BG290900 Rh4BG292200 Rh4CG308200 Rh4DG288200 Rh4DG289400
rosa_wichuraiana	Rw0G020620 Rw1G026830 Rw4G024720 Rw4G024830 Rw7G040280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	282
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	3 cut(s)	73, 185, 346
AluBI	AGCT	4 cut(s)	181, 223, 260, 268
AluI	AGCT	4 cut(s)	181, 223, 260, 268
Alw21I	GWGCWC	1 cut(s)	376
AlwNI	CAGNNNCTG	3 cut(s)	65, 305, 397
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	4
AspS9I	GGNCC	2 cut(s)	190, 358
AsuC2I	CCSGG	1 cut(s)	143
AsuII	TTCGAA	1 cut(s)	239
AvaII	GGWCC	2 cut(s)	190, 358
BalI	TGGCCA	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	2 cut(s)	205, 327
BclI	TGATCA	1 cut(s)	148
BcnI	CCSGG	1 cut(s)	143
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	143
Bme18I	GGWCC	2 cut(s)	190, 358
BmgT120I	GGNCC	2 cut(s)	190, 358
BmrFI	CCNGG	1 cut(s)	143
BmsI	GCATC	2 cut(s)	86, 288
Bpu14I	TTCGAA	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	143
BsaBI	GATNNNNATC	2 cut(s)	318, 336
Bse1I	ACTGG	1 cut(s)	381
Bse3DI	GCAATG	1 cut(s)	222
Bse8I	GATNNNNATC	2 cut(s)	318, 336
BseGI	GGATG	2 cut(s)	124, 319
BseJI	GATNNNNATC	2 cut(s)	318, 336
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	342
BseNI	ACTGG	1 cut(s)	381
BseXI	GCAGC	1 cut(s)	16
BseYI	CCCAGC	1 cut(s)	268
BsgI	GTGCAG	1 cut(s)	383
BshFI	GGCC	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	376
BsiSI	CCGG	1 cut(s)	142
BslFI	GGGAC	2 cut(s)	145, 287
BsmFI	GGGAC	2 cut(s)	145, 287
BsnI	GGCC	1 cut(s)	84
Bsp119I	TTCGAA	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp143I	GATC	3 cut(s)	103, 148, 331
BspANI	GGCC	1 cut(s)	84
BspCNI	CTCAG	1 cut(s)	341
BspHI	TCATGA	1 cut(s)	16
BspQI	GCTCTTC	1 cut(s)	258
BspT104I	TTCGAA	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	381
BssMI	GATC	3 cut(s)	103, 148, 331
Bst4CI	ACNGT	3 cut(s)	194, 251, 301
Bst6I	CTCTTC	3 cut(s)	15, 180, 258
BstBI	TTCGAA	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	1 cut(s)	328
BstF5I	GGATG	2 cut(s)	124, 319
BstKTI	GATC	3 cut(s)	106, 151, 334
BstMBI	GATC	3 cut(s)	103, 148, 331
BstNSI	RCATGY	2 cut(s)	31, 279
BstSCI	CCNGG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	84
BtsCI	GGATG	2 cut(s)	124, 319
BtsIMutI	CAGTG	2 cut(s)	99, 374
Cac8I	GCNNGC	1 cut(s)	277
CaiI	CAGNNNCTG	3 cut(s)	65, 305, 397
CciI	TCATGA	1 cut(s)	16
Cfr13I	GGNCC	2 cut(s)	190, 358
CviAII	CATG	5 cut(s)	17, 28, 86, 109, 276
CviJI	RGCY	7 cut(s)	65, 84, 146, 181, 223, 260, 268
CviKI_1	RGCY	7 cut(s)	65, 84, 146, 181, 223, 260, 268
DdeI	CTNAG	1 cut(s)	328
DpnI	GATC	3 cut(s)	105, 150, 333
DpnII	GATC	3 cut(s)	103, 148, 331
EaeI	YGGCCR	1 cut(s)	82
Eam1104I	CTCTTC	3 cut(s)	15, 180, 258
EarI	CTCTTC	3 cut(s)	15, 180, 258
Eco47I	GGWCC	2 cut(s)	190, 358
Eco57I	CTGAAG	1 cut(s)	282
EcoT22I	ATGCAT	1 cut(s)	281
FaeI	CATG	5 cut(s)	20, 31, 89, 112, 279
FaiI	YATR	7 cut(s)	18, 29, 87, 110, 277, 291, 409
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FaqI	GGGAC	2 cut(s)	145, 287
FatI	CATG	5 cut(s)	16, 27, 85, 108, 275
FbaI	TGATCA	1 cut(s)	148
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	2 cut(s)	131, 306
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	272
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	1 cut(s)	142
Hin1II	CATG	5 cut(s)	20, 31, 89, 112, 279
HindIII	AAGCTT	1 cut(s)	179
HpaII	CCGG	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	2 cut(s)	208, 331
Hpy188III	TCNNGA	2 cut(s)	17, 283
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	2 cut(s)	67, 394
HpyCH4III	ACNGT	3 cut(s)	194, 251, 301
HpyCH4V	TGCA	5 cut(s)	4, 171, 275, 279, 400
HpyF3I	CTNAG	1 cut(s)	328
Hsp92II	CATG	5 cut(s)	20, 31, 89, 112, 279
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	103, 148, 331
LguI	GCTCTTC	1 cut(s)	258
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	8 cut(s)	66, 72, 155, 254, 318, 350, 362, 404
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	2 cut(s)	86, 288
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	3 cut(s)	105, 150, 333
MboI	GATC	3 cut(s)	103, 148, 331
MboII	GAAGA	4 cut(s)	32, 136, 197, 275
MfeI	CAATTG	1 cut(s)	353
MhlI	GDGCHC	1 cut(s)	376
MlsI	TGGCCA	1 cut(s)	84
MluCI	AATT	2 cut(s)	242, 353
MluNI	TGGCCA	1 cut(s)	84
MnlI	CCTC	4 cut(s)	55, 62, 181, 333
Mox20I	TGGCCA	1 cut(s)	84
Mph1103I	ATGCAT	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	1 cut(s)	114
MslI	CAYNNNNRTG	1 cut(s)	412
Msp20I	TGGCCA	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	1 cut(s)	142
MspR9I	CCNGG	1 cut(s)	143
MunI	CAATTG	1 cut(s)	353
NciI	CCSGG	1 cut(s)	143
NdeII	GATC	3 cut(s)	103, 148, 331
NlaIII	CATG	5 cut(s)	20, 31, 89, 112, 279
NmuCI	GTSAC	1 cut(s)	194
NsiI	ATGCAT	1 cut(s)	281
NspI	RCATGY	2 cut(s)	31, 279
NspV	TTCGAA	1 cut(s)	239
PaeI	GCATGC	1 cut(s)	279
PagI	TCATGA	1 cut(s)	16
PciI	ACATGT	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	258
PkrI	GCNGC	1 cut(s)	6
PscI	ACATGT	1 cut(s)	27
PspFI	CCCAGC	1 cut(s)	268
PspPI	GGNCC	2 cut(s)	190, 358
PstNI	CAGNNNCTG	3 cut(s)	65, 305, 397
PvuII	CAGCTG	1 cut(s)	260
RseI	CAYNNNNRTG	1 cut(s)	412
SapI	GCTCTTC	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	3 cut(s)	103, 148, 331
Sau96I	GGNCC	2 cut(s)	190, 358
ScrFI	CCNGG	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	376
SetI	ASST	4 cut(s)	183, 225, 262, 270
SfaNI	GCATC	2 cut(s)	86, 288
SfuI	TTCGAA	1 cut(s)	239
SinI	GGWCC	2 cut(s)	190, 358
SmiMI	CAYNNNNRTG	1 cut(s)	412
SphI	GCATGC	1 cut(s)	279
Sse9I	AATT	2 cut(s)	242, 353
StyD4I	CCNGG	1 cut(s)	141
TaaI	ACNGT	3 cut(s)	194, 251, 301
TaqI	TCGA	2 cut(s)	239, 370
TasI	AATT	2 cut(s)	242, 353
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	2 cut(s)	106, 381
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	2 cut(s)	5, 33
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	2 cut(s)	106, 381
VpaK11BI	GGWCC	2 cut(s)	190, 358
XceI	RCATGY	2 cut(s)	31, 279
Zsp2I	ATGCAT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.