pycom16g11170

Glycine--tRNA ligase 1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
7758788 .. 7759886
1099 bp
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UTR
Exon/CDS
Intron
pycom16g11170.2

Sequence Viewer

Length: 603 bp
ATGGCTCACTATGCTGCTGATTGCTGGGATGCTGAGATTGAGAGTTCCTATGGCTGGATTGAGTGTGTTGGTATAGCTGATAGATCTGCATTTGACTTGCGTGCTCATACAGAGAAAAGTGGTGAAGCTCTTGTGGCTCATGAAAAATATCCAGAACCAAGAGAAGTAGAGGTATTGGTCATAACTCCAGTAAAGAAAGAGATCGGCCTTGCATTCAAGGGGAACCAAAAGAATGTAATTGAAGCGTTGGAGTCCATGAAAGAACAAGAAGCTATGGCACTGAAGGCTGATTTAGAGTCTAAAGGGGAGGTGGAGTTTTACGTCTGCACTCTGGGGAAGAATGTAATCGTTAAGAAGAGTATGGTAAAAATTTCAAAGGAGAAAAAGAAAGAACACCAGAGAGTATTCACGCCTTCTGTAATTGAACCATCTTTTGGTATCGGCCGAATTATATATTGCCTCTTTGAGCACACGTACTACACGAGGCCTAGTAAAGCTGATCGATCAACAGTTGAATGTTTTTGGTTTCCCCCCACTTGTGGCACCCATCAAGTGCACAGTTTTCCCTCTGGTTCAGAACCATCAGTAGGAGGATGTTGCTAA

Protein Analysis

201

Amino Acids

22.41

Weight (kDa)

6.0

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 542
AccB7I CCANNNNNTGG 1 cut(s) 434
AcoI YGGCCR 1 cut(s) 442
AcsI RAATTY 1 cut(s) 369
AcuI CTGAAG 1 cut(s) 302
AfaI GTAC 1 cut(s) 476
AfiI CCNNNNNNNGG 4 cut(s) 54, 434, 539, 587
AflIII ACRYGT 1 cut(s) 471
AgsI TTSAA 5 cut(s) 217, 242, 375, 425, 515
AjuI GAANNNNNNNTTGG 2 cut(s) 417, 449
AluBI AGCT 4 cut(s) 77, 128, 272, 497
AluI AGCT 4 cut(s) 77, 128, 272, 497
Alw21I GWGCWC 3 cut(s) 106, 471, 558
Alw44I GTGCAC 1 cut(s) 554
AoxI GGCC 3 cut(s) 205, 442, 485
ApaLI GTGCAC 1 cut(s) 554
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 369
AsuHPI GGTGA 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 558
BanI GGYRCC 1 cut(s) 542
BauI CACGAG 1 cut(s) 481
Bbv12I GWGCWC 3 cut(s) 106, 471, 558
BccI CCATC 3 cut(s) 436, 555, 589
BfaI CTAG 1 cut(s) 489
BglII AGATCT 1 cut(s) 83
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
BmiI GGNNCC 2 cut(s) 224, 544
BmsI GCATC 1 cut(s) 19
BpmI CTGGAG 1 cut(s) 171
Bsa29I ATCGAT 1 cut(s) 502
BsaAI YACGTR 1 cut(s) 474
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 4 cut(s) 54, 434, 539, 587
Bse1I ACTGG 1 cut(s) 188
BseCI ATCGAT 1 cut(s) 502
BseGI GGATG 2 cut(s) 34, 599
BseLI CCNNNNNNNGG 4 cut(s) 54, 434, 539, 587
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 188
BseSI GKGCMC 1 cut(s) 558
BseX3I CGGCCG 1 cut(s) 442
BseYI CCCAGC 1 cut(s) 24
BsgI GTGCAG 1 cut(s) 310
Bsh1285I CGRYCG 1 cut(s) 445
BshFI GGCC 3 cut(s) 207, 444, 487
BshNI GGYRCC 1 cut(s) 542
BshVI ATCGAT 1 cut(s) 502
BsiEI CGRYCG 1 cut(s) 445
BsiHKAI GWGCWC 3 cut(s) 106, 471, 558
BslI CCNNNNNNNGG 4 cut(s) 54, 434, 539, 587
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 3 cut(s) 207, 444, 487
Bsp1286I GDGCHC 3 cut(s) 106, 471, 558
Bsp143I GATC 4 cut(s) 83, 201, 499, 503
BspANI GGCC 3 cut(s) 207, 444, 487
BspCNI CTCAG 1 cut(s) 25
BspDI ATCGAT 1 cut(s) 502
BspHI TCATGA 1 cut(s) 139
BspLI GGNNCC 2 cut(s) 224, 544
BspT107I GGYRCC 1 cut(s) 542
BsrI ACTGG 1 cut(s) 188
BssMI GATC 4 cut(s) 83, 201, 499, 503
BssSI CACGAG 1 cut(s) 481
Bst2BI CACGAG 1 cut(s) 481
Bst4CI ACNGT 2 cut(s) 511, 560
Bst6I CTCTTC 1 cut(s) 350
BstBAI YACGTR 1 cut(s) 474
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 34, 599
BstKTI GATC 4 cut(s) 86, 204, 502, 506
BstMBI GATC 4 cut(s) 83, 201, 499, 503
BstMCI CGRYCG 1 cut(s) 445
BstMWI GCNNNNNNNGC 3 cut(s) 11, 134, 284
BstSLI GKGCMC 1 cut(s) 558
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BstZI CGGCCG 1 cut(s) 442
Bsu15I ATCGAT 1 cut(s) 502
BsuRI GGCC 3 cut(s) 207, 444, 487
BsuTUI ATCGAT 1 cut(s) 502
BtsCI GGATG 2 cut(s) 34, 599
BtsIMutI CAGTG 1 cut(s) 278
Cac8I GCNNGC 1 cut(s) 102
CciI TCATGA 1 cut(s) 139
ClaI ATCGAT 1 cut(s) 502
Csp6I GTAC 1 cut(s) 475
CviAII CATG 2 cut(s) 140, 256
CviQI GTAC 1 cut(s) 475
DdeI CTNAG 1 cut(s) 33
DpnI GATC 4 cut(s) 85, 203, 501, 505
DpnII GATC 4 cut(s) 83, 201, 499, 503
EaeI YGGCCR 1 cut(s) 442
EagI CGGCCG 1 cut(s) 442
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
EclXI CGGCCG 1 cut(s) 442
Eco147I AGGCCT 1 cut(s) 487
Eco52I CGGCCG 1 cut(s) 442
Eco57I CTGAAG 1 cut(s) 302
FaeI CATG 2 cut(s) 143, 259
FatI CATG 2 cut(s) 139, 255
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 1 cut(s) 489
GluI GCNGC 1 cut(s) 15
GsaI CCCAGC 1 cut(s) 28
GsuI CTGGAG 1 cut(s) 171
HaeIII GGCC 3 cut(s) 207, 444, 487
Hin1II CATG 2 cut(s) 143, 259
HinfI GANTC 2 cut(s) 251, 296
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 556
Hpy188I TCNGA 1 cut(s) 577
Hpy188III TCNNGA 2 cut(s) 140, 152
Hpy8I GTNNAC 1 cut(s) 556
HpyAV CCTTC 2 cut(s) 277, 423
HpyCH4III ACNGT 2 cut(s) 511, 560
HpyCH4IV ACGT 2 cut(s) 321, 473
HpyCH4V TGCA 4 cut(s) 89, 212, 327, 556
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 134, 284
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 2 cut(s) 321, 473
Hsp92II CATG 2 cut(s) 143, 259
Kzo9I GATC 4 cut(s) 83, 201, 499, 503
LpnPI CCDG 7 cut(s) 10, 40, 165, 201, 317, 410, 555
LweI GCATC 1 cut(s) 19
MaeI CTAG 1 cut(s) 489
MaeII ACGT 2 cut(s) 321, 473
MalI GATC 4 cut(s) 85, 203, 501, 505
MboI GATC 4 cut(s) 83, 201, 499, 503
MboII GAAGA 2 cut(s) 349, 367
MflI RGATCY 1 cut(s) 83
MhlI GDGCHC 3 cut(s) 106, 471, 558
MluCI AATT 4 cut(s) 237, 369, 420, 447
MlyI GAGTC 2 cut(s) 260, 305
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 6 cut(s) 163, 301, 470, 477, 577, 584
MseI TTAA 1 cut(s) 351
Mva1269I GAATGC 1 cut(s) 212
MwoI GCNNNNNNNGC 3 cut(s) 11, 134, 284
NdeII GATC 4 cut(s) 83, 201, 499, 503
NlaIII CATG 2 cut(s) 143, 259
NlaIV GGNNCC 2 cut(s) 224, 544
PagI TCATGA 1 cut(s) 139
PceI AGGCCT 1 cut(s) 487
PcsI WCGNNNNNNNCGW 1 cut(s) 479
PctI GAATGC 1 cut(s) 212
PflMI CCANNNNNTGG 1 cut(s) 434
PkrI GCNGC 1 cut(s) 16
PleI GAGTC 2 cut(s) 259, 304
PpsI GAGTC 2 cut(s) 259, 304
Ppu21I YACGTR 1 cut(s) 474
PspFI CCCAGC 1 cut(s) 24
PspN4I GGNNCC 2 cut(s) 224, 544
PsuI RGATCY 1 cut(s) 83
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 4 cut(s) 83, 201, 499, 503
SchI GAGTC 2 cut(s) 260, 305
SduI GDGCHC 3 cut(s) 106, 471, 558
SetI ASST 8 cut(s) 79, 130, 174, 274, 312, 324, 476, 499
SfaNI GCATC 1 cut(s) 19
Sse9I AATT 4 cut(s) 237, 369, 420, 447
SseBI AGGCCT 1 cut(s) 487
SspMI CTAG 1 cut(s) 489
StuI AGGCCT 1 cut(s) 487
TaaI ACNGT 2 cut(s) 511, 560
TaiI ACGT 2 cut(s) 324, 476
TaqI TCGA 1 cut(s) 502
TasI AATT 4 cut(s) 237, 369, 420, 447
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 285
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 2 cut(s) 156, 272
TspRI CASTG 1 cut(s) 285
Van91I CCANNNNNTGG 1 cut(s) 434
VneI GTGCAC 1 cut(s) 554
XapI RAATTY 1 cut(s) 369
XspI CTAG 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.