Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001310

Physical Location & Seq

Genomic Coordinates Forward (+)

46332898 .. 46333645

Gene Structure 748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG290700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAGTGATAATACAGAAAGCTCCCGCCGTGCTCTGGGCAACACTCTTGAACGGCGCTTCTTTTACATCCCTTCTTTCAAGATTTACAGCGCCGTTGCTGGCCTCTACGACTATGGCTCGCCTGGCTGCAAACTCAAGAAGAATGTCCTTTCACTTTGGCATCAGCACTTTGTTCATGAAGAGAACATGTGGGAGATTGACTGCCCTTGCCTCACGCCAGAGGCTGTTTTGAAGGCATCTGGCCATGTAGATAAGTTCACTGATCTCATGGTTAAGGATGAGAAGAAAGGGACTTGCTACCGGGCTGATCACTTGGTCAAGGATTTCTGCAATAAGAAGCTTGAAGAGGACCGTCACATTAGTTCAGAGATGGCAATGGAGCTGAAAGAAGTGCTTTCGAAATTGGACGGTCTATCAGCTGAAGAGCTGGGTGCATGCATCAAGAAATATGGGATTACAGTCCCTGAAACAGATAACCATCCTCTCTCAGATCGTTATCCTTTCAAACATCAATTGGTCCGTCTGGTTCGAGCACTGGTTTCCTTCGCCCAGAAACTGCACAAGGCATATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

191

Amino Acids

21.94

Weight (kDa)

7.65

Isoelectric Point (pI)

40.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29880
fragaria_vesca	FvH4_4g22441 FvH4_4g22450 FvH4_4g22450 FvH4_4g22610 FvH4_4g22610
malus_domestica	MD13G1131000.v1.1 MD13G1145800.v1.1 MD16G1141200.v1.1
prunus_persica	Prupe.1G214600_v2.0.a1
pyrus_communis	pycom13g11430 pycom13g12530 pycom16g11160 pycom16g11170
rosa_chinensis	RchiOBHm_Chr1g0361881 RchiOBHm_Chr4g0428711 RchiOBHm_Chr4g0428851
rosa_laevigata	RLG00000007120 RLG00000007133 RLG00000027689 RLG00000027690 RLG00000027694
rosa_multiflora	Rmu_co8208336.1_g000001 Rmu_co8210234.1_g000001 Rmu_sc0003316.1_g000006 Rmu_sc0008612.1_g000003 Rmu_sc0018216.1_g000001 Rmu_ssc0000124.1_g000013
rosa_roxburghii	Rroxscaffold_4G00294630 Rroxscaffold_5G00370530
rosa_rugosa	Rorug01G0292100 Rorug04G0227400 Rorug04G0227500 Rorug04G0229700
rosa_samantha	Rh1AG302800 Rh1BG265900 Rh1BG266000 Rh1CG284000 Rh1DG295900 Rh1DG296000 Rh4AG284700 Rh4AG284900 Rh4AG286400 Rh4BG290700 Rh4BG290900 Rh4BG292200 Rh4CG308200 Rh4DG288200 Rh4DG289400
rosa_wichuraiana	Rw0G020620 Rw1G026830 Rw4G024720 Rw4G024830 Rw7G040280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	25
AcoI	YGGCCR	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	441
AfiI	CCNNNNNNNGG	1 cut(s)	34
AflIII	ACRYGT	1 cut(s)	186
AgsI	TTSAA	5 cut(s)	50, 79, 232, 344, 505
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	5 cut(s)	21, 340, 382, 419, 427
AluI	AGCT	5 cut(s)	21, 340, 382, 419, 427
Alw21I	GWGCWC	2 cut(s)	34, 535
AlwNI	CAGNNNCTG	3 cut(s)	224, 464, 556
AoxI	GGCC	2 cut(s)	100, 241
ApeKI	GCWGC	1 cut(s)	126
AspLEI	GCGC	2 cut(s)	57, 92
AspS9I	GGNCC	2 cut(s)	349, 517
AsuC2I	CCSGG	1 cut(s)	302
AsuII	TTCGAA	1 cut(s)	398
AvaII	GGWCC	2 cut(s)	349, 517
BalI	TGGCCA	1 cut(s)	243
Bbv12I	GWGCWC	2 cut(s)	34, 535
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	2 cut(s)	364, 486
BceAI	ACGGC	3 cut(s)	12, 68, 77
BciT130I	CCWGG	1 cut(s)	123
BclI	TGATCA	1 cut(s)	307
BcnI	CCSGG	1 cut(s)	302
BfoI	RGCGCY	2 cut(s)	58, 93
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
Bme1390I	CCNGG	2 cut(s)	123, 302
Bme18I	GGWCC	2 cut(s)	349, 517
BmgT120I	GGNCC	2 cut(s)	349, 517
BmrFI	CCNGG	2 cut(s)	123, 302
BmsI	GCATC	3 cut(s)	169, 245, 447
Bpu14I	TTCGAA	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	302
BsaBI	GATNNNNATC	2 cut(s)	477, 495
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	540
Bse3DI	GCAATG	1 cut(s)	381
Bse8I	GATNNNNATC	2 cut(s)	477, 495
BseBI	CCWGG	1 cut(s)	123
BseGI	GGATG	3 cut(s)	66, 283, 478
BseJI	GATNNNNATC	2 cut(s)	477, 495
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	1 cut(s)	540
BseXI	GCAGC	1 cut(s)	113
BseYI	CCCAGC	1 cut(s)	427
BsgI	GTGCAG	1 cut(s)	542
BshFI	GGCC	2 cut(s)	102, 243
BsiHKAI	GWGCWC	2 cut(s)	34, 535
BsiSI	CCGG	1 cut(s)	301
BslFI	GGGAC	2 cut(s)	304, 446
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmFI	GGGAC	2 cut(s)	304, 446
BsnI	GGCC	2 cut(s)	102, 243
Bsp119I	TTCGAA	1 cut(s)	398
Bsp1286I	GDGCHC	2 cut(s)	34, 535
Bsp143I	GATC	3 cut(s)	262, 307, 490
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	2 cut(s)	102, 243
BspCNI	CTCAG	1 cut(s)	500
BspHI	TCATGA	1 cut(s)	175
BspQI	GCTCTTC	1 cut(s)	417
BspT104I	TTCGAA	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	540
BssMI	GATC	3 cut(s)	262, 307, 490
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	3 cut(s)	353, 410, 460
Bst6I	CTCTTC	3 cut(s)	174, 339, 417
BstBI	TTCGAA	1 cut(s)	398
BstC8I	GCNNGC	3 cut(s)	100, 119, 436
BstDEI	CTNAG	1 cut(s)	487
BstF5I	GGATG	3 cut(s)	66, 283, 478
BstH2I	RGCGCY	2 cut(s)	58, 93
BstHHI	GCGC	2 cut(s)	57, 92
BstKTI	GATC	3 cut(s)	265, 310, 493
BstMBI	GATC	3 cut(s)	262, 307, 490
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstNI	CCWGG	1 cut(s)	123
BstNSI	RCATGY	2 cut(s)	190, 438
BstSCI	CCNGG	2 cut(s)	121, 300
BstV1I	GCAGC	1 cut(s)	113
BsuRI	GGCC	2 cut(s)	102, 243
BtsCI	GGATG	3 cut(s)	66, 283, 478
BtsIMutI	CAGTG	2 cut(s)	258, 533
Cac8I	GCNNGC	3 cut(s)	100, 119, 436
CaiI	CAGNNNCTG	3 cut(s)	224, 464, 556
CciI	TCATGA	1 cut(s)	175
CfoI	GCGC	2 cut(s)	57, 92
Cfr13I	GGNCC	2 cut(s)	349, 517
CviAII	CATG	5 cut(s)	176, 187, 245, 268, 435
DdeI	CTNAG	1 cut(s)	487
DpnI	GATC	3 cut(s)	264, 309, 492
DpnII	GATC	3 cut(s)	262, 307, 490
EaeI	YGGCCR	1 cut(s)	241
Eam1104I	CTCTTC	3 cut(s)	174, 339, 417
EarI	CTCTTC	3 cut(s)	174, 339, 417
Eco47I	GGWCC	2 cut(s)	349, 517
Eco57I	CTGAAG	1 cut(s)	441
EcoRII	CCWGG	1 cut(s)	121
EcoT22I	ATGCAT	1 cut(s)	440
FaeI	CATG	5 cut(s)	179, 190, 248, 271, 438
FaiI	YATR	8 cut(s)	114, 177, 188, 246, 269, 436, 450, 568
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FaqI	GGGAC	2 cut(s)	304, 446
FatI	CATG	5 cut(s)	175, 186, 244, 267, 434
FauI	CCCGC	1 cut(s)	32
FbaI	TGATCA	1 cut(s)	307
Fnu4HI	GCNGC	1 cut(s)	127
FokI	GGATG	3 cut(s)	53, 290, 465
Fsp4HI	GCNGC	1 cut(s)	127
GlaI	GCGC	2 cut(s)	56, 91
GluI	GCNGC	1 cut(s)	127
GsaI	CCCAGC	1 cut(s)	431
HaeII	RGCGCY	2 cut(s)	58, 93
HaeIII	GGCC	2 cut(s)	102, 243
HapII	CCGG	1 cut(s)	301
HhaI	GCGC	2 cut(s)	57, 92
Hin1II	CATG	5 cut(s)	179, 190, 248, 271, 438
Hin6I	GCGC	2 cut(s)	55, 90
HinP1I	GCGC	2 cut(s)	55, 90
HindIII	AAGCTT	1 cut(s)	338
HpaII	CCGG	1 cut(s)	301
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188I	TCNGA	2 cut(s)	367, 490
Hpy188III	TCNNGA	5 cut(s)	47, 79, 136, 176, 442
Hpy8I	GTNNAC	1 cut(s)	258
HpyAV	CCTTC	3 cut(s)	81, 226, 553
HpyCH4III	ACNGT	3 cut(s)	353, 410, 460
HpyCH4V	TGCA	5 cut(s)	129, 330, 434, 438, 559
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
HpyF3I	CTNAG	1 cut(s)	487
Hsp92II	CATG	5 cut(s)	179, 190, 248, 271, 438
HspAI	GCGC	2 cut(s)	55, 90
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	3 cut(s)	262, 307, 490
LguI	GCTCTTC	1 cut(s)	417
LmnI	GCTCC	2 cut(s)	26, 379
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	3 cut(s)	169, 245, 447
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	3 cut(s)	264, 309, 492
MboI	GATC	3 cut(s)	262, 307, 490
MboII	GAAGA	5 cut(s)	151, 191, 295, 356, 434
MfeI	CAATTG	1 cut(s)	512
MhlI	GDGCHC	2 cut(s)	34, 535
MlsI	TGGCCA	1 cut(s)	243
MluCI	AATT	2 cut(s)	401, 512
MluNI	TGGCCA	1 cut(s)	243
MnlI	CCTC	5 cut(s)	113, 214, 221, 340, 492
Mox20I	TGGCCA	1 cut(s)	243
Mph1103I	ATGCAT	1 cut(s)	440
MscI	TGGCCA	1 cut(s)	243
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	571
Msp20I	TGGCCA	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	1 cut(s)	301
MspR9I	CCNGG	2 cut(s)	123, 302
MunI	CAATTG	1 cut(s)	512
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	123
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	3 cut(s)	262, 307, 490
NlaIII	CATG	5 cut(s)	179, 190, 248, 271, 438
NmuCI	GTSAC	1 cut(s)	353
NsiI	ATGCAT	1 cut(s)	440
NspI	RCATGY	2 cut(s)	190, 438
NspV	TTCGAA	1 cut(s)	398
PaeI	GCATGC	1 cut(s)	438
PagI	TCATGA	1 cut(s)	175
PciI	ACATGT	1 cut(s)	186
PciSI	GCTCTTC	1 cut(s)	417
PkrI	GCNGC	1 cut(s)	128
PscI	ACATGT	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	121
PspFI	CCCAGC	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	121
PspPI	GGNCC	2 cut(s)	349, 517
PstNI	CAGNNNCTG	3 cut(s)	224, 464, 556
PvuII	CAGCTG	1 cut(s)	419
RseI	CAYNNNNRTG	1 cut(s)	571
SapI	GCTCTTC	1 cut(s)	417
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	3 cut(s)	262, 307, 490
Sau96I	GGNCC	2 cut(s)	349, 517
ScrFI	CCNGG	2 cut(s)	123, 302
SduI	GDGCHC	2 cut(s)	34, 535
SetI	ASST	5 cut(s)	23, 342, 384, 421, 429
SfaNI	GCATC	3 cut(s)	169, 245, 447
SfuI	TTCGAA	1 cut(s)	398
SinI	GGWCC	2 cut(s)	349, 517
SmiMI	CAYNNNNRTG	1 cut(s)	571
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SphI	GCATGC	1 cut(s)	438
Sse9I	AATT	2 cut(s)	401, 512
SsiI	CCGC	1 cut(s)	25
StyD4I	CCNGG	2 cut(s)	121, 300
TaaI	ACNGT	3 cut(s)	353, 410, 460
TaqI	TCGA	2 cut(s)	398, 529
TasI	AATT	2 cut(s)	401, 512
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	2 cut(s)	265, 540
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	1 cut(s)	126
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	2 cut(s)	164, 192
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	2 cut(s)	265, 540
VpaK11BI	GGWCC	2 cut(s)	349, 517
XceI	RCATGY	2 cut(s)	190, 438
Zsp2I	ATGCAT	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.