Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001310

Physical Location & Seq

Genomic Coordinates Reverse (-)

39990244 .. 39990711

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG266000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTGGGAGATTGACTGCCCTTGTCTCACGCCAGAGGCTGTTTTGAAGGCATCTGGCCATGTAGATAAGTTCACTGATCTCATGGTTAGGGATGAGAAGAAAGGGACTTGCTACCGGGCTGATCACTTGCTCAAGGATTTCTGCAATAAGAAGCTTGAAGATCAGGACCGTCGCATTAGTCCAGAGATGGCAATGGAGCTGAAACAAGTGCTTTCGAAATTGGACGGTCTATCAGCTGAAGAGCTGGGTGCATGCATCAAGAAATATGGGATTAGAGCCCCCGAAACAGATAATTATCTCTCAGATCCTTATCCTTTCAACTTGATGTTTCAAACATCAATTGGTCCGTCTGGTTCGAGCACTGGTTTTTTTCGCCCAGAAACTGCACAAGGCATATTTGTGAACTTTATGGACATTTACTATGACAATGGGTGCAAGCTGCCTTTTGCCGTTGCTCAAGTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

155

Amino Acids

17.44

Weight (kDa)

5.05

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29880
fragaria_vesca	FvH4_4g22441 FvH4_4g22450 FvH4_4g22450 FvH4_4g22610 FvH4_4g22610
malus_domestica	MD13G1131000.v1.1 MD13G1145800.v1.1 MD16G1141200.v1.1
prunus_persica	Prupe.1G214600_v2.0.a1
pyrus_communis	pycom13g11430 pycom13g12530 pycom16g11160 pycom16g11170
rosa_chinensis	RchiOBHm_Chr1g0361881 RchiOBHm_Chr4g0428711 RchiOBHm_Chr4g0428851
rosa_laevigata	RLG00000007120 RLG00000007133 RLG00000027689 RLG00000027690 RLG00000027694
rosa_multiflora	Rmu_co8208336.1_g000001 Rmu_co8210234.1_g000001 Rmu_sc0003316.1_g000006 Rmu_sc0008612.1_g000003 Rmu_sc0018216.1_g000001 Rmu_ssc0000124.1_g000013
rosa_roxburghii	Rroxscaffold_4G00294630 Rroxscaffold_5G00370530
rosa_rugosa	Rorug01G0292100 Rorug04G0227400 Rorug04G0227500 Rorug04G0229700
rosa_samantha	Rh1AG302800 Rh1BG265900 Rh1BG266000 Rh1CG284000 Rh1DG295900 Rh1DG296000 Rh4AG284700 Rh4AG284900 Rh4AG286400 Rh4BG290700 Rh4BG290900 Rh4BG292200 Rh4CG308200 Rh4DG288200 Rh4DG289400
rosa_wichuraiana	Rw0G020620 Rw1G026830 Rw4G024720 Rw4G024830 Rw7G040280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	299
AcoI	YGGCCR	1 cut(s)	55
AcuI	CTGAAG	1 cut(s)	258
AgsI	TTSAA	4 cut(s)	46, 158, 319, 332
AluBI	AGCT	5 cut(s)	154, 199, 236, 244, 439
AluI	AGCT	5 cut(s)	154, 199, 236, 244, 439
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	299
AlwNI	CAGNNNCTG	2 cut(s)	38, 383
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	439
AspS9I	GGNCC	2 cut(s)	166, 344
AsuC2I	CCSGG	1 cut(s)	116
AsuII	TTCGAA	1 cut(s)	215
AvaII	GGWCC	2 cut(s)	166, 344
BalI	TGGCCA	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	280
Bbv12I	GWGCWC	1 cut(s)	362
BbvI	GCAGC	1 cut(s)	426
BccI	CCATC	1 cut(s)	181
BceAI	ACGGC	1 cut(s)	434
BclI	TGATCA	1 cut(s)	121
BcnI	CCSGG	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	466
BisI	GCNGC	1 cut(s)	440
BlsI	GCNGC	1 cut(s)	441
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	2 cut(s)	166, 344
BmgT120I	GGNCC	2 cut(s)	166, 344
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	2 cut(s)	59, 264
Bpu14I	TTCGAA	1 cut(s)	215
BpuEI	CTTGAG	2 cut(s)	116, 441
BpuMI	CCSGG	1 cut(s)	116
BsaBI	GATNNNNATC	2 cut(s)	294, 309
Bse1I	ACTGG	1 cut(s)	367
Bse3DI	GCAATG	1 cut(s)	198
Bse8I	GATNNNNATC	2 cut(s)	294, 309
BseGI	GGATG	1 cut(s)	97
BseJI	GATNNNNATC	2 cut(s)	294, 309
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	367
BseXI	GCAGC	1 cut(s)	426
BseYI	CCCAGC	1 cut(s)	244
BsgI	GTGCAG	1 cut(s)	369
BshFI	GGCC	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	362
BsiSI	CCGG	1 cut(s)	115
BslFI	GGGAC	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	57
Bsp119I	TTCGAA	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	280, 362
Bsp143I	GATC	4 cut(s)	76, 121, 160, 304
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	314
BspPI	GGATC	1 cut(s)	299
BspQI	GCTCTTC	1 cut(s)	234
BspT104I	TTCGAA	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	367
BssMI	GATC	4 cut(s)	76, 121, 160, 304
Bst4CI	ACNGT	2 cut(s)	170, 227
Bst6I	CTCTTC	1 cut(s)	234
BstBI	TTCGAA	1 cut(s)	215
BstC8I	GCNNGC	2 cut(s)	253, 437
BstDEI	CTNAG	1 cut(s)	301
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	4 cut(s)	79, 124, 163, 307
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	4 cut(s)	76, 121, 160, 304
BstNSI	RCATGY	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	114
BstV1I	GCAGC	1 cut(s)	426
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	2 cut(s)	72, 360
Cac8I	GCNNGC	2 cut(s)	253, 437
CaiI	CAGNNNCTG	2 cut(s)	38, 383
Cfr13I	GGNCC	2 cut(s)	166, 344
CviAII	CATG	3 cut(s)	59, 82, 252
DdeI	CTNAG	1 cut(s)	301
DpnI	GATC	4 cut(s)	78, 123, 162, 306
DpnII	GATC	4 cut(s)	76, 121, 160, 304
EaeI	YGGCCR	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	280
Eco47I	GGWCC	2 cut(s)	166, 344
Eco57I	CTGAAG	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	257
EcoT38I	GRGCYC	1 cut(s)	280
FaeI	CATG	3 cut(s)	62, 85, 255
FaiI	YATR	7 cut(s)	60, 83, 253, 267, 395, 410, 423
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	3 cut(s)	58, 81, 251
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	440
FokI	GGATG	1 cut(s)	104
FriOI	GRGCYC	1 cut(s)	280
Fsp4HI	GCNGC	1 cut(s)	440
FspBI	CTAG	1 cut(s)	466
GluI	GCNGC	1 cut(s)	440
GsaI	CCCAGC	1 cut(s)	248
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	1 cut(s)	115
Hin1II	CATG	3 cut(s)	62, 85, 255
HindIII	AAGCTT	1 cut(s)	152
HpaII	CCGG	1 cut(s)	115
Hpy166II	GTNNAC	2 cut(s)	72, 403
Hpy188I	TCNGA	1 cut(s)	304
Hpy188III	TCNNGA	3 cut(s)	164, 182, 259
Hpy8I	GTNNAC	2 cut(s)	72, 403
Hpy99I	CGWCG	1 cut(s)	174
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	2 cut(s)	170, 227
HpyCH4V	TGCA	5 cut(s)	144, 251, 255, 386, 435
HpyF3I	CTNAG	1 cut(s)	301
Hsp92II	CATG	3 cut(s)	62, 85, 255
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	4 cut(s)	76, 121, 160, 304
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	9 cut(s)	39, 45, 128, 149, 195, 230, 336, 348, 390
Lsp1109I	GCAGC	1 cut(s)	426
LweI	GCATC	2 cut(s)	59, 264
MaeI	CTAG	1 cut(s)	466
MalI	GATC	4 cut(s)	78, 123, 162, 306
MboI	GATC	4 cut(s)	76, 121, 160, 304
MboII	GAAGA	3 cut(s)	109, 170, 251
MfeI	CAATTG	1 cut(s)	339
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	2 cut(s)	280, 362
MlsI	TGGCCA	1 cut(s)	57
MluCI	AATT	3 cut(s)	218, 292, 339
MluNI	TGGCCA	1 cut(s)	57
MnlI	CCTC	1 cut(s)	28
Mox20I	TGGCCA	1 cut(s)	57
Mph1103I	ATGCAT	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	398
Msp20I	TGGCCA	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	116
MunI	CAATTG	1 cut(s)	339
NciI	CCSGG	1 cut(s)	116
NdeII	GATC	4 cut(s)	76, 121, 160, 304
NlaIII	CATG	3 cut(s)	62, 85, 255
NsiI	ATGCAT	1 cut(s)	257
NspI	RCATGY	1 cut(s)	255
NspV	TTCGAA	1 cut(s)	215
PaeI	GCATGC	1 cut(s)	255
PciSI	GCTCTTC	1 cut(s)	234
PkrI	GCNGC	1 cut(s)	441
PspFI	CCCAGC	1 cut(s)	244
PspPI	GGNCC	2 cut(s)	166, 344
PstNI	CAGNNNCTG	2 cut(s)	38, 383
PsuI	RGATCY	1 cut(s)	304
PvuII	CAGCTG	1 cut(s)	236
RseI	CAYNNNNRTG	1 cut(s)	398
SapI	GCTCTTC	1 cut(s)	234
SatI	GCNGC	1 cut(s)	440
Sau3AI	GATC	4 cut(s)	76, 121, 160, 304
Sau96I	GGNCC	2 cut(s)	166, 344
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	2 cut(s)	280, 362
SetI	ASST	5 cut(s)	156, 201, 238, 246, 441
SfaNI	GCATC	2 cut(s)	59, 264
SfuI	TTCGAA	1 cut(s)	215
SinI	GGWCC	2 cut(s)	166, 344
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	2 cut(s)	131, 456
SmoI	CTYRAG	2 cut(s)	131, 456
SphI	GCATGC	1 cut(s)	255
Sse9I	AATT	3 cut(s)	218, 292, 339
SspMI	CTAG	1 cut(s)	466
StyD4I	CCNGG	1 cut(s)	114
TaaI	ACNGT	2 cut(s)	170, 227
TaqI	TCGA	2 cut(s)	215, 356
TasI	AATT	3 cut(s)	218, 292, 339
TscAI	CASTG	2 cut(s)	79, 367
TseI	GCWGC	1 cut(s)	439
TspGWI	ACGGA	1 cut(s)	336
TspRI	CASTG	2 cut(s)	79, 367
VpaK11BI	GGWCC	2 cut(s)	166, 344
XceI	RCATGY	1 cut(s)	255
XspI	CTAG	1 cut(s)	466
Zsp2I	ATGCAT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.