Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001310

Physical Location & Seq

Genomic Coordinates Forward (+)

14079852 .. 14080409

Gene Structure 558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027694

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGTGACAATTTCAAAGGATAAAACAAGAGAACATCAAAGAAAATTCACACCCTCAGTAATCGAGCCTTCATTTGGTATTGGGCGGATTATATATTGTCTGTTTGAGCATTCCTTCTACACCAGACCAGATAAAACTGGGGATGAACAATTGAATGTGTTTCGGTTTAACCCACTTGTGGCGCCTTTTAAGTGCACAGTTTTCCCTCTGGTCCGGAACCAACAGTTTGAGGATGTTGCCAAGGACATTTCCAAGTCATTGACTGCTGCTGGCATATCGCATAAAATGGAAAATACAGGTACCTCGATTGGGAAACGTTACGCACGTACTGATGAGCTCGGTGTACCCTTTGCAATCACGGTTGATTCTACATCCTCAGTCACAATTCGAGAAAGAGACAGCAAAGATCAAATCCGTGTTAGTGTGAAGGAGGCAGTATCTGTTGTGAAGGAGCTCAGTGAGGGATTGAGGACTTGGGAAGATGTGTGGTGGTCACCTAGTCAACGGTGGAAGAGATTCTGGCGTTCCTGCTTCAGATTTGTATTGTCTAGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

186

Amino Acids

21.45

Weight (kDa)

9.6

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HGTP_anticodon	PF03129	64 - 152	8.9e-21	Anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29880
fragaria_vesca	FvH4_4g22441 FvH4_4g22450 FvH4_4g22450 FvH4_4g22610 FvH4_4g22610
malus_domestica	MD13G1131000.v1.1 MD13G1145800.v1.1 MD16G1141200.v1.1
prunus_persica	Prupe.1G214600_v2.0.a1
pyrus_communis	pycom13g11430 pycom13g12530 pycom16g11160 pycom16g11170
rosa_chinensis	RchiOBHm_Chr1g0361881 RchiOBHm_Chr4g0428711 RchiOBHm_Chr4g0428851
rosa_laevigata	RLG00000007120 RLG00000007133 RLG00000027689 RLG00000027690 RLG00000027694
rosa_multiflora	Rmu_co8208336.1_g000001 Rmu_co8210234.1_g000001 Rmu_sc0003316.1_g000006 Rmu_sc0008612.1_g000003 Rmu_sc0018216.1_g000001 Rmu_ssc0000124.1_g000013
rosa_roxburghii	Rroxscaffold_4G00294630 Rroxscaffold_5G00370530
rosa_rugosa	Rorug01G0292100 Rorug04G0227400 Rorug04G0227500 Rorug04G0229700
rosa_samantha	Rh1AG302800 Rh1BG265900 Rh1BG266000 Rh1CG284000 Rh1DG295900 Rh1DG296000 Rh4AG284700 Rh4AG284900 Rh4AG286400 Rh4BG290700 Rh4BG290900 Rh4BG292200 Rh4CG308200 Rh4DG288200 Rh4DG289400
rosa_wichuraiana	Rw0G020620 Rw1G026830 Rw4G024720 Rw4G024830 Rw7G040280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	299
AccB1I	GGYRCC	2 cut(s)	181, 299
AccIII	TCCGGA	1 cut(s)	213
AciI	CCGC	1 cut(s)	85
AclI	AACGTT	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	1 cut(s)	517
AcyI	GRCGYC	1 cut(s)	182
AfaI	GTAC	3 cut(s)	301, 328, 345
AfiI	CCNNNNNNNGG	3 cut(s)	74, 178, 309
AgsI	TTSAA	2 cut(s)	15, 154
AluBI	AGCT	2 cut(s)	337, 454
AluI	AGCT	2 cut(s)	337, 454
Alw21I	GWGCWC	3 cut(s)	197, 339, 456
Alw26I	GTCTC	1 cut(s)	390
Alw44I	GTGCAC	1 cut(s)	193
AlwNI	CAGNNNCTG	1 cut(s)	440
Aor13HI	TCCGGA	1 cut(s)	213
ApaLI	GTGCAC	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	44
Asp700I	GAANNNNTTC	1 cut(s)	515
Asp718I	GGTACC	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	2 cut(s)	16, 486
AvaII	GGWCC	1 cut(s)	211
BaeGI	GKGCMC	1 cut(s)	197
BanI	GGYRCC	2 cut(s)	181, 299
BanII	GRGCYC	2 cut(s)	339, 456
Bbv12I	GWGCWC	3 cut(s)	197, 339, 456
BbvI	GCAGC	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	390
BfaI	CTAG	2 cut(s)	498, 549
BfoI	RGCGCY	1 cut(s)	185
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	3 cut(s)	183, 218, 301
BmrI	ACTGGG	1 cut(s)	147
BmuI	ACTGGG	1 cut(s)	147
BsaAI	YACGTR	1 cut(s)	326
BsaHI	GRCGYC	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 178, 309
Bse1I	ACTGG	1 cut(s)	142
BseAI	TCCGGA	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	3 cut(s)	148, 238, 371
BseLI	CCNNNNNNNGG	3 cut(s)	74, 178, 309
BseMII	CTCAG	3 cut(s)	69, 390, 469
BseNI	ACTGG	1 cut(s)	142
BseSI	GKGCMC	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	253
BshNI	GGYRCC	2 cut(s)	181, 299
BsiHKAI	GWGCWC	3 cut(s)	197, 339, 456
BsiSI	CCGG	1 cut(s)	214
BslI	CCNNNNNNNGG	3 cut(s)	74, 178, 309
BsmAI	GTCTC	1 cut(s)	390
BsmI	GAATGC	1 cut(s)	109
Bsp1286I	GDGCHC	3 cut(s)	197, 339, 456
Bsp13I	TCCGGA	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	406
BspACI	CCGC	1 cut(s)	85
BspCNI	CTCAG	3 cut(s)	68, 389, 468
BspEI	TCCGGA	1 cut(s)	213
BspLI	GGNNCC	3 cut(s)	183, 218, 301
BspT107I	GGYRCC	2 cut(s)	181, 299
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	1 cut(s)	406
BssNI	GRCGYC	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	240
Bst4CI	ACNGT	4 cut(s)	199, 225, 361, 507
Bst6I	CTCTTC	1 cut(s)	506
BstACI	GRCGYC	1 cut(s)	182
BstBAI	YACGTR	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	3 cut(s)	55, 376, 455
BstEII	GGTNACC	1 cut(s)	492
BstF5I	GGATG	3 cut(s)	148, 238, 371
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	1 cut(s)	409
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	1 cut(s)	406
BstPI	GGTNACC	1 cut(s)	492
BstSLI	GKGCMC	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	253
BtsCI	GGATG	3 cut(s)	148, 238, 371
BtsIMutI	CAGTG	1 cut(s)	463
Cac8I	GCNNGC	1 cut(s)	271
CaiI	CAGNNNCTG	1 cut(s)	440
CfoI	GCGC	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	3 cut(s)	300, 327, 344
CviJI	RGCY	3 cut(s)	67, 337, 454
CviKI_1	RGCY	3 cut(s)	67, 337, 454
CviQI	GTAC	3 cut(s)	300, 327, 344
DdeI	CTNAG	3 cut(s)	55, 376, 455
DinI	GGCGCC	1 cut(s)	183
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
Eam1104I	CTCTTC	1 cut(s)	506
EarI	CTCTTC	1 cut(s)	506
EciI	GGCGGA	1 cut(s)	100
Ecl136II	GAGCTC	2 cut(s)	337, 454
Eco130I	CCWWGG	1 cut(s)	240
Eco24I	GRGCYC	2 cut(s)	339, 456
Eco47I	GGWCC	1 cut(s)	211
Eco53kI	GAGCTC	2 cut(s)	337, 454
Eco57I	CTGAAG	1 cut(s)	517
Eco91I	GGTNACC	1 cut(s)	492
EcoICRI	GAGCTC	2 cut(s)	337, 454
EcoO65I	GGTNACC	1 cut(s)	492
EcoT14I	CCWWGG	1 cut(s)	240
EcoT38I	GRGCYC	2 cut(s)	339, 456
EgeI	GGCGCC	1 cut(s)	183
EheI	GGCGCC	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	240
FaiI	YATR	4 cut(s)	92, 94, 275, 282
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	3 cut(s)	155, 245, 358
FriOI	GRGCYC	2 cut(s)	339, 456
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	2 cut(s)	498, 549
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	185
HapII	CCGG	1 cut(s)	214
HhaI	GCGC	1 cut(s)	184
Hin1I	GRCGYC	1 cut(s)	182
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HincII	GTYRAC	1 cut(s)	503
HindII	GTYRAC	1 cut(s)	503
HinfI	GANTC	2 cut(s)	365, 516
HpaII	CCGG	1 cut(s)	214
HphI	GGTGA	2 cut(s)	16, 486
Hpy166II	GTNNAC	3 cut(s)	195, 344, 503
Hpy188I	TCNGA	1 cut(s)	536
Hpy188III	TCNNGA	3 cut(s)	214, 389, 549
Hpy8I	GTNNAC	3 cut(s)	195, 344, 503
HpyAV	CCTTC	4 cut(s)	78, 124, 421, 442
HpyCH4III	ACNGT	4 cut(s)	199, 225, 361, 507
HpyCH4IV	ACGT	2 cut(s)	316, 325
HpyCH4V	TGCA	2 cut(s)	195, 353
HpyF3I	CTNAG	3 cut(s)	55, 376, 455
HpySE526I	ACGT	2 cut(s)	316, 325
Hsp92I	GRCGYC	1 cut(s)	182
HspAI	GCGC	1 cut(s)	182
KasI	GGCGCC	1 cut(s)	181
Kpn2I	TCCGGA	1 cut(s)	213
KpnI	GGTACC	1 cut(s)	303
Kzo9I	GATC	1 cut(s)	406
LmnI	GCTCC	1 cut(s)	451
LpnPI	CCDG	9 cut(s)	123, 136, 141, 194, 227, 255, 282, 505, 541
Lsp1109I	GCAGC	1 cut(s)	253
MaeI	CTAG	2 cut(s)	498, 549
MaeII	ACGT	2 cut(s)	316, 325
MaeIII	GTNAC	4 cut(s)	4, 317, 379, 492
MalI	GATC	1 cut(s)	408
MboI	GATC	1 cut(s)	406
MboII	GAAGA	2 cut(s)	491, 523
MfeI	CAATTG	1 cut(s)	149
MhlI	GDGCHC	3 cut(s)	197, 339, 456
MluCI	AATT	4 cut(s)	9, 44, 149, 384
Mly113I	GGCGCC	1 cut(s)	182
MnlI	CCTC	8 cut(s)	64, 216, 223, 313, 385, 424, 454, 462
MroI	TCCGGA	1 cut(s)	213
MroXI	GAANNNNTTC	1 cut(s)	515
MseI	TTAA	2 cut(s)	168, 189
MspI	CCGG	1 cut(s)	214
MunI	CAATTG	1 cut(s)	149
Mva1269I	GAATGC	1 cut(s)	109
NarI	GGCGCC	1 cut(s)	182
NdeII	GATC	1 cut(s)	406
NlaIV	GGNNCC	3 cut(s)	183, 218, 301
NmuCI	GTSAC	3 cut(s)	4, 379, 492
PcsI	WCGNNNNNNNCGW	1 cut(s)	322
PctI	GAATGC	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	515
PfeI	GAWTC	2 cut(s)	365, 516
PkrI	GCNGC	1 cut(s)	268
PluTI	GGCGCC	1 cut(s)	185
Ppu21I	YACGTR	1 cut(s)	326
Psp124BI	GAGCTC	2 cut(s)	339, 456
Psp1406I	AACGTT	1 cut(s)	316
PspEI	GGTNACC	1 cut(s)	492
PspN4I	GGNNCC	3 cut(s)	183, 218, 301
PspPI	GGNCC	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	440
RsaI	GTAC	3 cut(s)	301, 328, 345
RsaNI	GTAC	3 cut(s)	300, 327, 344
SacI	GAGCTC	2 cut(s)	339, 456
SaqAI	TTAA	2 cut(s)	168, 189
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	406
Sau96I	GGNCC	1 cut(s)	211
SduI	GDGCHC	3 cut(s)	197, 339, 456
SetI	ASST	7 cut(s)	301, 305, 319, 328, 339, 456, 499
SfoI	GGCGCC	1 cut(s)	183
SinI	GGWCC	1 cut(s)	211
Sse9I	AATT	4 cut(s)	9, 44, 149, 384
SsiI	CCGC	1 cut(s)	85
SspDI	GGCGCC	1 cut(s)	181
SspMI	CTAG	2 cut(s)	498, 549
SstI	GAGCTC	2 cut(s)	339, 456
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	4 cut(s)	199, 225, 361, 507
TaiI	ACGT	2 cut(s)	319, 328
TaqI	TCGA	3 cut(s)	63, 305, 388
TasI	AATT	4 cut(s)	9, 44, 149, 384
TfiI	GAWTC	2 cut(s)	365, 516
Tru1I	TTAA	2 cut(s)	168, 189
Tru9I	TTAA	2 cut(s)	168, 189
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	3 cut(s)	4, 379, 492
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	3 cut(s)	4, 379, 492
TspDTI	ATGAA	2 cut(s)	60, 159
TspGWI	ACGGA	1 cut(s)	404
TspRI	CASTG	1 cut(s)	463
VneI	GTGCAC	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	1 cut(s)	44
XbaI	TCTAGA	1 cut(s)	548
XmnI	GAANNNNTTC	1 cut(s)	515
XspI	CTAG	2 cut(s)	498, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.