Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001310

Physical Location & Seq

Genomic Coordinates Forward (+)

13973040 .. 13974199

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027689

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAGTAATAATAATACAGAAAGCTCCCGCAGTGCTCTGACCAACACTCTTGAACGGCGCTTCTTTTACAACTCTTCTTTCGAGATCTACGGCACCGTTACTGGCCTCTACGACTATGGCTCGCCCGGCTGCAAACTCAAGAAGAATGTCCTTTTGCTTTGGCATCAGCACTTTGTTCATGAAGAGAACATGTGGGAGATTGACTGCCCTTGTCTCACGCCAGAAGCTGTCTTGAAGGCATCTGCCATAGCTGGTGCATGTATCAAGAAATATGGGATTAGAGCCCCCGAAACAGATAATTATCTCTCAGATCCTTATCCTTTCAACTTGATGTTTCAAACATCAATTGGTCCGTCTGGTTCGAGCACTGGTTTCTTCGGCCCAGAAACTGCACAAGGCATATTTGTGAATTTTATGGACATTTACTATGACAATGGGTGCAAGCTGCCTTTTGCCATTGCTCAAGTTGGCCAGGCTTTTCGAAACGAGATATCTCCTCGCCAAGGCCTGTTGAGAGTCCTGCATTCTAAGATTGTGGAGAATGAAACTCTTGGCTACTTCATTGGGAGAGTATATCTCTTCCTCACTCGTCTAGGTATAGACAAGAACCATATAAGGTTCAGGCAACACCTTGCTAAAGAAATGGCTCACTATGCTGCTGACTGCTGGGATGCTGAGATTGAGACTTCCTATGGCTGGATTGAGTGCGTTGGTATTGCAAATAGATCTGCACATGACTTGAAGGCTCATTCGGGGAAAAGTCATCTTGAGGCATATGAACATGTTAGGATTTCTGGTTACTTACTGACCAAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

273

Amino Acids

30.76

Weight (kDa)

6.59

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29880
fragaria_vesca	FvH4_4g22441 FvH4_4g22450 FvH4_4g22450 FvH4_4g22610 FvH4_4g22610
malus_domestica	MD13G1131000.v1.1 MD13G1145800.v1.1 MD16G1141200.v1.1
prunus_persica	Prupe.1G214600_v2.0.a1
pyrus_communis	pycom13g11430 pycom13g12530 pycom16g11160 pycom16g11170
rosa_chinensis	RchiOBHm_Chr1g0361881 RchiOBHm_Chr4g0428711 RchiOBHm_Chr4g0428851
rosa_laevigata	RLG00000007120 RLG00000007133 RLG00000027689 RLG00000027690 RLG00000027694
rosa_multiflora	Rmu_co8208336.1_g000001 Rmu_co8210234.1_g000001 Rmu_sc0003316.1_g000006 Rmu_sc0008612.1_g000003 Rmu_sc0018216.1_g000001 Rmu_ssc0000124.1_g000013
rosa_roxburghii	Rroxscaffold_4G00294630 Rroxscaffold_5G00370530
rosa_rugosa	Rorug01G0292100 Rorug04G0227400 Rorug04G0227500 Rorug04G0229700
rosa_samantha	Rh1AG302800 Rh1BG265900 Rh1BG266000 Rh1CG284000 Rh1DG295900 Rh1DG296000 Rh4AG284700 Rh4AG284900 Rh4AG286400 Rh4BG290700 Rh4BG290900 Rh4BG292200 Rh4CG308200 Rh4DG288200 Rh4DG289400
rosa_wichuraiana	Rw0G020620 Rw1G026830 Rw4G024720 Rw4G024830 Rw7G040280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AciI	CCGC	1 cut(s)	28
AclWI	GGATC	1 cut(s)	305
AcoI	YGGCCR	1 cut(s)	469
AcsI	RAATTY	1 cut(s)	409
AfiI	CCNNNNNNNGG	2 cut(s)	503, 696
AflIII	ACRYGT	2 cut(s)	189, 781
AgsI	TTSAA	5 cut(s)	53, 235, 325, 338, 742
AjnI	CCWGG	1 cut(s)	471
AluBI	AGCT	4 cut(s)	24, 227, 251, 445
AluI	AGCT	4 cut(s)	24, 227, 251, 445
Alw21I	GWGCWC	2 cut(s)	37, 368
Alw26I	GTCTC	2 cut(s)	218, 677
AlwI	GGATC	1 cut(s)	305
AlwNI	CAGNNNCTG	2 cut(s)	227, 389
AoxI	GGCC	4 cut(s)	103, 379, 469, 505
ApeKI	GCWGC	3 cut(s)	129, 445, 656
ApoI	RAATTY	1 cut(s)	409
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	350, 380
AsuC2I	CCSGG	1 cut(s)	126
AsuII	TTCGAA	1 cut(s)	481
AvaII	GGWCC	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	471
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	286
Bbv12I	GWGCWC	2 cut(s)	37, 368
BbvI	GCAGC	3 cut(s)	116, 432, 643
BceAI	ACGGC	2 cut(s)	71, 106
BciT130I	CCWGG	1 cut(s)	473
BcnI	CCSGG	1 cut(s)	126
BcoDI	GTCTC	2 cut(s)	218, 677
BfaI	CTAG	1 cut(s)	593
BfoI	RGCGCY	1 cut(s)	61
BglII	AGATCT	2 cut(s)	84, 725
BisI	GCNGC	3 cut(s)	130, 446, 657
BlsI	GCNGC	3 cut(s)	131, 447, 658
Bme1390I	CCNGG	2 cut(s)	126, 473
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	2 cut(s)	350, 380
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	2 cut(s)	126, 473
BmsI	GCATC	3 cut(s)	172, 248, 661
BplI	GAGNNNNNCTC	2 cut(s)	561, 593
Bpu14I	TTCGAA	1 cut(s)	481
BpuEI	CTTGAG	3 cut(s)	122, 447, 788
BpuMI	CCSGG	1 cut(s)	126
BsaBI	GATNNNNATC	2 cut(s)	300, 315
BsaJI	CCNNGG	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	2 cut(s)	503, 696
Bse1I	ACTGG	2 cut(s)	106, 373
Bse3DI	GCAATG	1 cut(s)	456
Bse8I	GATNNNNATC	2 cut(s)	300, 315
BseBI	CCWGG	1 cut(s)	473
BseDI	CCNNGG	1 cut(s)	502
BseGI	GGATG	1 cut(s)	676
BseJI	GATNNNNATC	2 cut(s)	300, 315
BseLI	CCNNNNNNNGG	2 cut(s)	503, 696
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	2 cut(s)	321, 666
BseNI	ACTGG	2 cut(s)	106, 373
BseRI	GAGGAG	1 cut(s)	486
BseXI	GCAGC	3 cut(s)	116, 432, 643
BseYI	CCCAGC	1 cut(s)	666
BsgI	GTGCAG	2 cut(s)	375, 714
BshFI	GGCC	4 cut(s)	105, 381, 471, 507
BshNI	GGYRCC	1 cut(s)	92
BsiHKAI	GWGCWC	2 cut(s)	37, 368
BsiSI	CCGG	1 cut(s)	126
BslI	CCNNNNNNNGG	2 cut(s)	503, 696
BsmAI	GTCTC	2 cut(s)	218, 677
BsmI	GAATGC	1 cut(s)	523
BsnI	GGCC	4 cut(s)	105, 381, 471, 507
Bsp119I	TTCGAA	1 cut(s)	481
Bsp1286I	GDGCHC	3 cut(s)	37, 286, 368
Bsp143I	GATC	3 cut(s)	84, 310, 725
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	4 cut(s)	105, 381, 471, 507
BspCNI	CTCAG	2 cut(s)	320, 667
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	94
BspPI	GGATC	1 cut(s)	305
BspT104I	TTCGAA	1 cut(s)	481
BspT107I	GGYRCC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	456
BsrI	ACTGG	2 cut(s)	106, 373
BssECI	CCNNGG	1 cut(s)	502
BssMI	GATC	3 cut(s)	84, 310, 725
BssT1I	CCWWGG	1 cut(s)	502
Bst2UI	CCWGG	1 cut(s)	473
Bst4CI	ACNGT	1 cut(s)	97
Bst6I	CTCTTC	3 cut(s)	79, 177, 584
BstBI	TTCGAA	1 cut(s)	481
BstC8I	GCNNGC	2 cut(s)	122, 443
BstDEI	CTNAG	3 cut(s)	307, 528, 675
BstENI	CCTNNNNNAGG	1 cut(s)	501
BstF5I	GGATG	1 cut(s)	676
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	3 cut(s)	87, 313, 728
BstMAI	GTCTC	2 cut(s)	218, 677
BstMBI	GATC	3 cut(s)	84, 310, 725
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 653
BstNI	CCWGG	1 cut(s)	473
BstNSI	RCATGY	3 cut(s)	193, 261, 785
BstSCI	CCNGG	2 cut(s)	124, 471
BstV1I	GCAGC	3 cut(s)	116, 432, 643
BstX2I	RGATCY	3 cut(s)	84, 310, 725
BstYI	RGATCY	3 cut(s)	84, 310, 725
BsuRI	GGCC	4 cut(s)	105, 381, 471, 507
BtsCI	GGATG	1 cut(s)	676
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	2 cut(s)	37, 366
Cac8I	GCNNGC	2 cut(s)	122, 443
CaiI	CAGNNNCTG	2 cut(s)	227, 389
CciI	TCATGA	1 cut(s)	178
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	2 cut(s)	350, 380
CviAII	CATG	5 cut(s)	179, 190, 258, 734, 782
DdeI	CTNAG	3 cut(s)	307, 528, 675
DpnI	GATC	3 cut(s)	86, 312, 727
DpnII	GATC	3 cut(s)	84, 310, 725
EaeI	YGGCCR	1 cut(s)	469
Eam1104I	CTCTTC	3 cut(s)	79, 177, 584
EarI	CTCTTC	3 cut(s)	79, 177, 584
Eco130I	CCWWGG	1 cut(s)	502
Eco147I	AGGCCT	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	286
Eco32I	GATATC	1 cut(s)	492
Eco47I	GGWCC	1 cut(s)	350
EcoNI	CCTNNNNNAGG	1 cut(s)	501
EcoRII	CCWGG	1 cut(s)	471
EcoRV	GATATC	1 cut(s)	492
EcoT14I	CCWWGG	1 cut(s)	502
EcoT38I	GRGCYC	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	502
FaeI	CATG	5 cut(s)	182, 193, 261, 737, 785
FatI	CATG	5 cut(s)	178, 189, 257, 733, 781
FauI	CCCGC	1 cut(s)	35
FauNDI	CATATG	1 cut(s)	775
Fnu4HI	GCNGC	3 cut(s)	130, 446, 657
FokI	GGATG	1 cut(s)	683
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	3 cut(s)	130, 446, 657
FspBI	CTAG	1 cut(s)	593
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	3 cut(s)	130, 446, 657
GsaI	CCCAGC	1 cut(s)	670
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	4 cut(s)	105, 381, 471, 507
HapII	CCGG	1 cut(s)	126
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	5 cut(s)	182, 193, 261, 737, 785
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	1 cut(s)	516
HpaII	CCGG	1 cut(s)	126
Hpy188I	TCNGA	2 cut(s)	39, 310
Hpy188III	TCNNGA	7 cut(s)	50, 82, 139, 179, 232, 265, 767
HpyAV	CCTTC	2 cut(s)	229, 736
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4V	TGCA	7 cut(s)	132, 257, 392, 441, 523, 719, 731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 653
HpyF3I	CTNAG	3 cut(s)	307, 528, 675
Hsp92II	CATG	5 cut(s)	182, 193, 261, 737, 785
HspAI	GCGC	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	84, 310, 725
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	3 cut(s)	116, 432, 643
LweI	GCATC	3 cut(s)	172, 248, 661
MaeI	CTAG	1 cut(s)	593
MaeIII	GTNAC	2 cut(s)	97, 797
MalI	GATC	3 cut(s)	86, 312, 727
MboI	GATC	3 cut(s)	84, 310, 725
MboII	GAAGA	5 cut(s)	66, 154, 194, 367, 571
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	3 cut(s)	84, 310, 725
MhlI	GDGCHC	3 cut(s)	37, 286, 368
MlsI	TGGCCA	1 cut(s)	471
MluCI	AATT	3 cut(s)	298, 345, 409
MluNI	TGGCCA	1 cut(s)	471
MlyI	GAGTC	1 cut(s)	525
MnlI	CCTC	4 cut(s)	116, 507, 593, 763
Mox20I	TGGCCA	1 cut(s)	471
MscI	TGGCCA	1 cut(s)	471
MseI	TTAA	1 cut(s)	817
MslI	CAYNNNNRTG	1 cut(s)	404
Msp20I	TGGCCA	1 cut(s)	471
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	2 cut(s)	126, 473
MunI	CAATTG	1 cut(s)	345
Mva1269I	GAATGC	1 cut(s)	523
MvaI	CCWGG	1 cut(s)	473
MwoI	GCNNNNNNNGC	2 cut(s)	126, 653
NciI	CCSGG	1 cut(s)	126
NdeI	CATATG	1 cut(s)	775
NdeII	GATC	3 cut(s)	84, 310, 725
NlaIII	CATG	5 cut(s)	182, 193, 261, 737, 785
NlaIV	GGNNCC	1 cut(s)	94
NspI	RCATGY	3 cut(s)	193, 261, 785
NspV	TTCGAA	1 cut(s)	481
PagI	TCATGA	1 cut(s)	178
PceI	AGGCCT	1 cut(s)	507
PciI	ACATGT	2 cut(s)	189, 781
PctI	GAATGC	1 cut(s)	523
PflFI	GACNNNGTC	1 cut(s)	811
PkrI	GCNGC	3 cut(s)	131, 447, 658
PleI	GAGTC	1 cut(s)	524
PpsI	GAGTC	1 cut(s)	524
PscI	ACATGT	2 cut(s)	189, 781
Psp6I	CCWGG	1 cut(s)	471
PspFI	CCCAGC	1 cut(s)	666
PspGI	CCWGG	1 cut(s)	471
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	2 cut(s)	350, 380
PstNI	CAGNNNCTG	2 cut(s)	227, 389
PsuI	RGATCY	3 cut(s)	84, 310, 725
PsyI	GACNNNGTC	1 cut(s)	811
RseI	CAYNNNNRTG	1 cut(s)	404
SaqAI	TTAA	1 cut(s)	817
SatI	GCNGC	3 cut(s)	130, 446, 657
Sau3AI	GATC	3 cut(s)	84, 310, 725
Sau96I	GGNCC	2 cut(s)	350, 380
SchI	GAGTC	1 cut(s)	525
ScrFI	CCNGG	2 cut(s)	126, 473
SduI	GDGCHC	3 cut(s)	37, 286, 368
SetI	ASST	7 cut(s)	26, 229, 253, 447, 598, 620, 633
SfaNI	GCATC	3 cut(s)	172, 248, 661
SfuI	TTCGAA	1 cut(s)	481
SinI	GGWCC	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	3 cut(s)	137, 462, 767
SmoI	CTYRAG	3 cut(s)	137, 462, 767
Sse9I	AATT	3 cut(s)	298, 345, 409
SseBI	AGGCCT	1 cut(s)	507
SsiI	CCGC	1 cut(s)	28
SspMI	CTAG	1 cut(s)	593
StuI	AGGCCT	1 cut(s)	507
StyD4I	CCNGG	2 cut(s)	124, 471
StyI	CCWWGG	1 cut(s)	502
TaaI	ACNGT	1 cut(s)	97
TaqI	TCGA	3 cut(s)	81, 362, 481
TasI	AATT	3 cut(s)	298, 345, 409
Tru1I	TTAA	1 cut(s)	817
Tru9I	TTAA	1 cut(s)	817
TscAI	CASTG	2 cut(s)	37, 373
TseI	GCWGC	3 cut(s)	129, 445, 656
TspDTI	ATGAA	5 cut(s)	167, 195, 550, 558, 792
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	2 cut(s)	37, 373
Tth111I	GACNNNGTC	1 cut(s)	811
VpaK11BI	GGWCC	1 cut(s)	350
XagI	CCTNNNNNAGG	1 cut(s)	501
XapI	RAATTY	1 cut(s)	409
XceI	RCATGY	3 cut(s)	193, 261, 785
XspI	CTAG	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.