FvH4_5g19301

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000638
Physical Location & Seq
Reverse (-)
11166178 .. 11166826
649 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19301.t1

Sequence Viewer

Length: 255 bp
ATGCACCACTACGAGCTCGAGCATGAGGCAGTGAGAGCCGACGCGGAGGGTGAGGAGGTCGAGGCAGTGGTCAGTGGAGTCGTAGGGGCGAGGGCTGTAGAAGGGGAGGTGCTCCTCGGTGACGAGGCCGACGAAGATGGAGTTGGGGAGAGGAGGCTTGGTGTTGGTGGATTTAGAGCGGAGGAGCTTGGTGAGCCACTTGGAGGCGACGCCGTCGTGGTCGTTGATGCTCGATTTATCATTGTGGCGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

8.78

Weight (kDa)

4.22

Isoelectric Point (pI)

29.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 179
AccII CGCG 1 cut(s) 44
AciI CCGC 3 cut(s) 44, 179, 248
AcyI GRCGYC 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 203
AjuI GAANNNNNNNTTGG 2 cut(s) 126, 158
AluBI AGCT 2 cut(s) 16, 187
AluI AGCT 2 cut(s) 16, 187
Alw21I GWGCWC 2 cut(s) 18, 114
Ama87I CYCGRG 1 cut(s) 17
AoxI GGCC 1 cut(s) 126
AsuHPI GGTGA 3 cut(s) 62, 131, 203
AvaI CYCGRG 1 cut(s) 17
BanII GRGCYC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 18, 114
BccI CCATC 1 cut(s) 131
BceAI ACGGC 1 cut(s) 197
BfmI CTRYAG 1 cut(s) 96
BmeT110I CYCGRG 1 cut(s) 17
BmsI GCATC 1 cut(s) 217
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 115
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bsc4I CCNNNNNNNGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 115
BseLI CCNNNNNNNGG 1 cut(s) 203
BseRI GAGGAG 4 cut(s) 68, 104, 166, 197
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 1 cut(s) 128
BsiHKAI GWGCWC 2 cut(s) 18, 114
BsiHKCI CYCGRG 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 203
BsnI GGCC 1 cut(s) 128
BsoBI CYCGRG 1 cut(s) 17
Bsp1286I GDGCHC 2 cut(s) 18, 114
BspACI CCGC 3 cut(s) 44, 179, 248
BspANI GGCC 1 cut(s) 128
BspFNI CGCG 1 cut(s) 44
BsrBI CCGCTC 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 115
BssNI GRCGYC 1 cut(s) 210
BstACI GRCGYC 1 cut(s) 210
BstFNI CGCG 1 cut(s) 44
BstMWI GCNNNNNNNGC 2 cut(s) 35, 193
BstSFI CTRYAG 1 cut(s) 96
BstUI CGCG 1 cut(s) 44
BsuRI GGCC 1 cut(s) 128
BtsI GCAGTG 2 cut(s) 36, 72
BtsIMutI CAGTG 3 cut(s) 36, 72, 79
CseI GACGC 2 cut(s) 50, 218
CviAII CATG 1 cut(s) 23
CviJI RGCY 7 cut(s) 16, 38, 95, 128, 157, 187, 196
CviKI_1 RGCY 7 cut(s) 16, 38, 95, 128, 157, 187, 196
Ecl136II GAGCTC 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 16
Eco88I CYCGRG 1 cut(s) 17
EcoICRI GAGCTC 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 18
FaeI CATG 1 cut(s) 26
FaiI YATR 1 cut(s) 24
FatI CATG 1 cut(s) 22
FriOI GRGCYC 1 cut(s) 18
HaeIII GGCC 1 cut(s) 128
HgaI GACGC 2 cut(s) 50, 218
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 1 cut(s) 26
HinfI GANTC 1 cut(s) 78
HphI GGTGA 3 cut(s) 62, 131, 203
Hpy99I CGWCG 4 cut(s) 44, 134, 212, 218
HpyAV CCTTC 1 cut(s) 95
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 193
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 1 cut(s) 26
LmnI GCTCC 2 cut(s) 117, 184
LweI GCATC 1 cut(s) 217
MaeIII GTNAC 1 cut(s) 119
MbiI CCGCTC 1 cut(s) 179
MboII GAAGA 1 cut(s) 146
MhlI GDGCHC 2 cut(s) 18, 114
MlyI GAGTC 1 cut(s) 87
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 2 cut(s) 35, 193
NlaIII CATG 1 cut(s) 26
NmuCI GTSAC 1 cut(s) 119
PaeR7I CTCGAG 1 cut(s) 17
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PflFI GACNNNGTC 1 cut(s) 212
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 18
PspXI VCTCGAGB 1 cut(s) 17
PsyI GACNNNGTC 1 cut(s) 212
SacI GAGCTC 1 cut(s) 18
SchI GAGTC 1 cut(s) 87
SduI GDGCHC 2 cut(s) 18, 114
SetI ASST 4 cut(s) 18, 60, 111, 189
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 1 cut(s) 96
Sfr274I CTCGAG 1 cut(s) 17
SlaI CTCGAG 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
SsiI CCGC 3 cut(s) 44, 179, 248
SstI GAGCTC 1 cut(s) 18
TaqI TCGA 3 cut(s) 18, 60, 232
TscAI CASTG 3 cut(s) 36, 72, 79
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
TspRI CASTG 3 cut(s) 36, 72, 79
Tth111I GACNNNGTC 1 cut(s) 212
XhoI CTCGAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.