Rh3CG136600

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000638
Physical Location & Seq
Forward (+)
11211578 .. 11222266
10689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG136600.1

Sequence Viewer

Length: 549 bp
ATGGAGAAATCTCAATCTCACGTAGTGATCTTTCCATTTCCACTGCAAGGCCACATCAAACCCTTGCTCTGCTTGGCAGAGCTTCTCTGCCATGCAGGCCTTCATGTCACCTTCGTCAACACCCGCCACAACCACAACCGCTTAGCGAACCTCCGTGCCCTCTCCGCCCACTTCCCCACCCTCCACTTCGAGTCCATCTTGGACGGTCTCCCCGATGACCACCCACGCACTTTGGGCAGCGAGTTGTTGATCGCATTGAAGACATCAATTAAGCCTCATTTTAAGGAGCTGCTCCAGTCATCCCTTAAGGCCAACAGTGTTGCGCTGCCGCCGCCAACATGTATTATAACAGATGGACTTGTGACTTTTGCTTTTGATGTTGCAGAAGAGTTGGGGTTGCCCGTACTTAGTTATAATGTTCCTTATGCTCGTTACATGTGGACTTGTCTTTGTCTTCCCAACCTCATCGAACAAGGCCAGCTTCCTTTCCCAGGTTCATATATATGTATTTCTCCGGTCAAAGACAAACGAAGAACTCCAGATCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

182

Amino Acids

20.34

Weight (kDa)

7.71

Isoelectric Point (pI)

60.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 7 - 54 2.8e-06 Glycosyltransferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 347, 414
AciI CCGC 5 cut(s) 124, 139, 165, 329, 332
AdeI CACNNNGTG 1 cut(s) 25
AfaI GTAC 1 cut(s) 405
AfiI CCNNNNNNNGG 2 cut(s) 47, 491
AflII CTTAAG 1 cut(s) 305
AflIII ACRYGT 2 cut(s) 338, 435
AgsI TTSAA 1 cut(s) 259
AjnI CCWGG 1 cut(s) 490
AluBI AGCT 3 cut(s) 82, 289, 481
AluI AGCT 3 cut(s) 82, 289, 481
Alw26I GTCTC 1 cut(s) 212
AoxI GGCC 4 cut(s) 49, 97, 309, 475
ApeKI GCWGC 3 cut(s) 237, 289, 325
AspLEI GCGC 1 cut(s) 325
AsuHPI GGTGA 1 cut(s) 100
BaeGI GKGCMC 1 cut(s) 160
BbsI GAAGAC 2 cut(s) 266, 446
BbvI GCAGC 3 cut(s) 249, 276, 312
BccI CCATC 2 cut(s) 203, 347
BciT130I CCWGG 1 cut(s) 492
BcoDI GTCTC 1 cut(s) 212
BfrI CTTAAG 1 cut(s) 305
BglI GCCNNNNNGGC 1 cut(s) 96
BisI GCNGC 5 cut(s) 238, 290, 326, 329, 332
BlpI GCTNAGC 1 cut(s) 142
BlsI GCNGC 5 cut(s) 239, 291, 327, 330, 333
Bme1390I CCNGG 1 cut(s) 492
BmrFI CCNGG 1 cut(s) 492
BpiI GAAGAC 2 cut(s) 266, 446
BpmI CTGGAG 2 cut(s) 278, 522
Bpu1102I GCTNAGC 1 cut(s) 142
BsaAI YACGTR 1 cut(s) 22
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 490
BsaWI WCCGGW 1 cut(s) 514
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 491
Bse1I ACTGG 1 cut(s) 295
BseBI CCWGG 1 cut(s) 492
BseDI CCNNGG 1 cut(s) 490
BseGI GGATG 1 cut(s) 299
BseLI CCNNNNNNNGG 2 cut(s) 47, 491
BseNI ACTGG 1 cut(s) 295
BseSI GKGCMC 1 cut(s) 160
BseXI GCAGC 3 cut(s) 249, 276, 312
BshFI GGCC 4 cut(s) 51, 99, 311, 477
BsiSI CCGG 1 cut(s) 515
BslI CCNNNNNNNGG 2 cut(s) 47, 491
BsmAI GTCTC 1 cut(s) 212
BsnI GGCC 4 cut(s) 51, 99, 311, 477
Bso31I GGTCTC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 160
Bsp143I GATC 3 cut(s) 27, 249, 541
Bsp1720I GCTNAGC 1 cut(s) 142
BspACI CCGC 5 cut(s) 124, 139, 165, 329, 332
BspANI GGCC 4 cut(s) 51, 99, 311, 477
BspTI CTTAAG 1 cut(s) 305
BspTNI GGTCTC 1 cut(s) 212
BsrI ACTGG 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 490
BssMI GATC 3 cut(s) 27, 249, 541
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 2 cut(s) 206, 317
Bst6I CTCTTC 1 cut(s) 381
BstAFI CTTAAG 1 cut(s) 305
BstBAI YACGTR 1 cut(s) 22
BstC8I GCNNGC 2 cut(s) 97, 479
BstDEI CTNAG 2 cut(s) 142, 407
BstENI CCTNNNNNAGG 1 cut(s) 489
BstF5I GGATG 1 cut(s) 299
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 3 cut(s) 30, 252, 544
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 3 cut(s) 27, 249, 541
BstMWI GCNNNNNNNGC 4 cut(s) 96, 164, 234, 331
BstNI CCWGG 1 cut(s) 492
BstNSI RCATGY 2 cut(s) 342, 439
BstSCI CCNGG 1 cut(s) 490
BstSLI GKGCMC 1 cut(s) 160
BstV1I GCAGC 3 cut(s) 249, 276, 312
BstV2I GAAGAC 2 cut(s) 266, 446
BsuRI GGCC 4 cut(s) 51, 99, 311, 477
BtsCI GGATG 1 cut(s) 299
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 2 cut(s) 41, 322
Cac8I GCNNGC 2 cut(s) 97, 479
CfoI GCGC 1 cut(s) 325
Csp6I GTAC 1 cut(s) 404
CspCI CAANNNNNGTGG 2 cut(s) 213, 248
CviAII CATG 4 cut(s) 92, 104, 339, 436
CviJI RGCY 8 cut(s) 51, 82, 99, 274, 289, 311, 477, 481
CviKI_1 RGCY 8 cut(s) 51, 82, 99, 274, 289, 311, 477, 481
CviQI GTAC 1 cut(s) 404
DdeI CTNAG 2 cut(s) 142, 407
DpnI GATC 3 cut(s) 29, 251, 543
DpnII GATC 3 cut(s) 27, 249, 541
DraIII CACNNNGTG 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
EciI GGCGGA 1 cut(s) 154
Eco147I AGGCCT 1 cut(s) 99
Eco31I GGTCTC 1 cut(s) 212
EcoNI CCTNNNNNAGG 1 cut(s) 489
EcoRII CCWGG 1 cut(s) 490
FaeI CATG 4 cut(s) 95, 107, 342, 439
FalI AAGNNNNNCTT 2 cut(s) 465, 497
FatI CATG 4 cut(s) 91, 103, 338, 435
FauI CCCGC 1 cut(s) 131
Fnu4HI GCNGC 5 cut(s) 238, 290, 326, 329, 332
FokI GGATG 1 cut(s) 286
Fsp4HI GCNGC 5 cut(s) 238, 290, 326, 329, 332
GlaI GCGC 1 cut(s) 324
GluI GCNGC 5 cut(s) 238, 290, 326, 329, 332
GsuI CTGGAG 2 cut(s) 278, 522
HaeIII GGCC 4 cut(s) 51, 99, 311, 477
HapII CCGG 1 cut(s) 515
HhaI GCGC 1 cut(s) 325
Hin1II CATG 4 cut(s) 95, 107, 342, 439
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 1 cut(s) 191
HpaII CCGG 1 cut(s) 515
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 2 cut(s) 118, 441
Hpy188III TCNNGA 1 cut(s) 539
Hpy8I GTNNAC 2 cut(s) 118, 441
HpyAV CCTTC 2 cut(s) 110, 121
HpyCH4III ACNGT 2 cut(s) 206, 317
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 3 cut(s) 46, 95, 383
HpyF10VI GCNNNNNNNGC 4 cut(s) 96, 164, 234, 331
HpyF3I CTNAG 2 cut(s) 142, 407
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 4 cut(s) 95, 107, 342, 439
HspAI GCGC 1 cut(s) 323
Kzo9I GATC 3 cut(s) 27, 249, 541
LmnI GCTCC 2 cut(s) 286, 297
LpnPI CCDG 6 cut(s) 81, 308, 477, 491, 504, 528
Lsp1109I GCAGC 3 cut(s) 249, 276, 312
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 3 cut(s) 106, 361, 431
MalI GATC 3 cut(s) 29, 251, 543
MboI GATC 3 cut(s) 27, 249, 541
MboII GAAGA 4 cut(s) 271, 398, 446, 543
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 1 cut(s) 267
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 5 cut(s) 161, 170, 191, 285, 473
MseI TTAA 3 cut(s) 270, 282, 306
MslI CAYNNNNRTG 1 cut(s) 502
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 1 cut(s) 515
MspR9I CCNGG 1 cut(s) 492
MvaI CCWGG 1 cut(s) 492
MwoI GCNNNNNNNGC 4 cut(s) 96, 164, 234, 331
NdeII GATC 3 cut(s) 27, 249, 541
NlaIII CATG 4 cut(s) 95, 107, 342, 439
NmuCI GTSAC 2 cut(s) 106, 361
NspI RCATGY 2 cut(s) 342, 439
PceI AGGCCT 1 cut(s) 99
PciI ACATGT 2 cut(s) 338, 435
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PkrI GCNGC 5 cut(s) 239, 291, 327, 330, 333
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
Ppu21I YACGTR 1 cut(s) 22
PscI ACATGT 2 cut(s) 338, 435
PsiI TTATAA 2 cut(s) 347, 414
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
RsaI GTAC 1 cut(s) 405
RsaNI GTAC 1 cut(s) 404
RseI CAYNNNNRTG 1 cut(s) 502
SaqAI TTAA 3 cut(s) 270, 282, 306
SatI GCNGC 5 cut(s) 238, 290, 326, 329, 332
Sau3AI GATC 3 cut(s) 27, 249, 541
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 492
SduI GDGCHC 1 cut(s) 160
SetI ASST 8 cut(s) 24, 84, 113, 153, 291, 465, 483, 496
SmiMI CAYNNNNRTG 1 cut(s) 502
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 1 cut(s) 267
SseBI AGGCCT 1 cut(s) 99
SsiI CCGC 5 cut(s) 124, 139, 165, 329, 332
StuI AGGCCT 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 490
TaaI ACNGT 2 cut(s) 206, 317
TaiI ACGT 1 cut(s) 24
TaqI TCGA 2 cut(s) 189, 468
TasI AATT 1 cut(s) 267
TauI GCSGC 2 cut(s) 331, 334
Tru1I TTAA 3 cut(s) 270, 282, 306
Tru9I TTAA 3 cut(s) 270, 282, 306
TscAI CASTG 2 cut(s) 48, 322
TseFI GTSAC 2 cut(s) 106, 361
TseI GCWGC 3 cut(s) 237, 289, 325
Tsp45I GTSAC 2 cut(s) 106, 361
TspDTI ATGAA 2 cut(s) 92, 486
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 2 cut(s) 48, 322
Vha464I CTTAAG 1 cut(s) 305
XagI CCTNNNNNAGG 1 cut(s) 489
XceI RCATGY 2 cut(s) 342, 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.