FvH4_6g12560

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000638
Physical Location & Seq
Forward (+)
7609364 .. 7609828
465 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12560.t1

Sequence Viewer

Length: 465 bp
ATGCTAACCTTGGCGCAGCTGCTCTGTCATGCAGGCATCCACGTCACCTTCGTCAACACCGAGCACAACCACCGCCATCTCACCCGACGCGAAGCCCTCTCCGCTCGCTTCCCTACTCTCCACTTCCGCTCCATCTCCGACGGCCTCCCCTCCGATCATCCACGATCCATTGTCCCTTATTTTTTGGACATAGTCACGTCCTTGAGGTCCACAACTGCGCCGCTCCTGCATCAACTCCTGGTCTCCCTCACCAGCATAAGTGACGTCGTCGGCGATGGTGCTGGTCAGCTGCCTCCATTGAGCTGTGTGATAACGGACGGGATCATGTGTTTCGCAATTGATGCGGCGGAGGAGGTTGGACTTCCAGTAATTGCCGTCCGCACCAGCGGCGCCTGCAGCGTCTGGTGTTACTTATGCCTCCCCAAGCTGATTGAAGAAGCTGAGATGCCTTTCGGAGGTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

155

Amino Acids

16.69

Weight (kDa)

5.83

Isoelectric Point (pI)

53.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 267
AccB1I GGYRCC 1 cut(s) 389
AccBSI CCGCTC 3 cut(s) 104, 129, 223
AccII CGCG 1 cut(s) 90
AciI CCGC 8 cut(s) 73, 102, 127, 221, 344, 347, 379, 387
AclWI GGATC 2 cut(s) 159, 329
AcyI GRCGYC 2 cut(s) 264, 390
AfiI CCNNNNNNNGG 1 cut(s) 455
AgsI TTSAA 1 cut(s) 434
AjiI CACGTC 2 cut(s) 43, 198
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 5 cut(s) 19, 289, 303, 427, 440
AluI AGCT 5 cut(s) 19, 289, 303, 427, 440
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 247
AlwI GGATC 2 cut(s) 159, 329
AlwNI CAGNNNCTG 1 cut(s) 402
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 4 cut(s) 16, 19, 289, 396
AspLEI GCGC 3 cut(s) 16, 220, 392
AspS9I GGNCC 1 cut(s) 207
AsuHPI GGTGA 3 cut(s) 37, 73, 241
AvaII GGWCC 1 cut(s) 207
BanI GGYRCC 1 cut(s) 389
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 4 cut(s) 6, 28, 276, 408
BccI CCATC 3 cut(s) 84, 140, 269
BceAI ACGGC 2 cut(s) 157, 359
BciT130I CCWGG 1 cut(s) 239
BcoDI GTCTC 1 cut(s) 247
BfmI CTRYAG 1 cut(s) 394
BfoI RGCGCY 1 cut(s) 393
BisI GCNGC 7 cut(s) 17, 20, 221, 290, 345, 388, 397
BlsI GCNGC 7 cut(s) 18, 21, 222, 291, 346, 389, 398
Bme1390I CCNGG 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 207
BmgBI CACGTC 2 cut(s) 43, 198
BmgT120I GGNCC 1 cut(s) 207
BmiI GGNNCC 1 cut(s) 391
BmrFI CCNGG 1 cut(s) 239
BmsI GCATC 4 cut(s) 45, 238, 331, 435
BpuEI CTTGAG 1 cut(s) 223
BsaHI GRCGYC 2 cut(s) 264, 390
BsaI GGTCTC 1 cut(s) 247
BsaJI CCNNGG 1 cut(s) 9
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 1 cut(s) 455
Bse1I ACTGG 1 cut(s) 365
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 2 cut(s) 36, 157
BseLI CCNNNNNNNGG 1 cut(s) 455
BseMII CTCAG 1 cut(s) 432
BseNI ACTGG 1 cut(s) 365
BseRI GAGGAG 1 cut(s) 365
BseXI GCAGC 4 cut(s) 6, 28, 276, 408
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 1 cut(s) 144
BshNI GGYRCC 1 cut(s) 389
BsiHKAI GWGCWC 1 cut(s) 66
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 455
BsmAI GTCTC 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 1 cut(s) 144
Bso31I GGTCTC 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 3 cut(s) 154, 164, 321
BspACI CCGC 8 cut(s) 73, 102, 127, 221, 344, 347, 379, 387
BspANI GGCC 1 cut(s) 144
BspCNI CTCAG 1 cut(s) 433
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 391
BspMAI CTGCAG 1 cut(s) 398
BspPI GGATC 2 cut(s) 159, 329
BspT107I GGYRCC 1 cut(s) 389
BspTNI GGTCTC 1 cut(s) 247
BsrBI CCGCTC 3 cut(s) 104, 129, 223
BsrI ACTGG 1 cut(s) 365
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 3 cut(s) 154, 164, 321
BssNI GRCGYC 2 cut(s) 264, 390
BssT1I CCWWGG 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 239
BstACI GRCGYC 2 cut(s) 264, 390
BstAPI GCANNNNNTGC 1 cut(s) 341
BstC8I GCNNGC 3 cut(s) 34, 106, 394
BstDEI CTNAG 1 cut(s) 441
BstENI CCTNNNNNAGG 1 cut(s) 453
BstF5I GGATG 2 cut(s) 36, 157
BstFNI CGCG 1 cut(s) 90
BstH2I RGCGCY 1 cut(s) 393
BstHHI GCGC 3 cut(s) 16, 220, 392
BstKTI GATC 3 cut(s) 157, 167, 324
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 3 cut(s) 154, 164, 321
BstMWI GCNNNNNNNGC 6 cut(s) 101, 226, 341, 387, 393, 396
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 237
BstSFI CTRYAG 1 cut(s) 394
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 4 cut(s) 6, 28, 276, 408
BsuRI GGCC 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 288
BtrI CACGTC 2 cut(s) 43, 198
BtsCI GGATG 2 cut(s) 36, 157
Cac8I GCNNGC 3 cut(s) 34, 106, 394
CaiI CAGNNNCTG 1 cut(s) 402
CfoI GCGC 3 cut(s) 16, 220, 392
Cfr13I GGNCC 1 cut(s) 207
CseI GACGC 2 cut(s) 96, 388
CviAII CATG 2 cut(s) 29, 325
CviJI RGCY 7 cut(s) 19, 95, 144, 289, 303, 427, 440
CviKI_1 RGCY 7 cut(s) 19, 95, 144, 289, 303, 427, 440
DdeI CTNAG 1 cut(s) 441
DinI GGCGCC 1 cut(s) 391
DpnI GATC 3 cut(s) 156, 166, 323
DpnII GATC 3 cut(s) 154, 164, 321
EciI GGCGGA 1 cut(s) 362
Eco130I CCWWGG 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 247
Eco47I GGWCC 1 cut(s) 207
EcoNI CCTNNNNNAGG 1 cut(s) 453
EcoRII CCWGG 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 9
EgeI GGCGCC 1 cut(s) 391
EheI GGCGCC 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 2 cut(s) 32, 328
FaiI YATR 5 cut(s) 30, 191, 257, 326, 415
FaqI GGGAC 1 cut(s) 158
FatI CATG 2 cut(s) 28, 324
Fnu4HI GCNGC 7 cut(s) 17, 20, 221, 290, 345, 388, 397
FokI GGATG 2 cut(s) 23, 144
Fsp4HI GCNGC 7 cut(s) 17, 20, 221, 290, 345, 388, 397
GlaI GCGC 3 cut(s) 15, 219, 391
GluI GCNGC 7 cut(s) 17, 20, 221, 290, 345, 388, 397
HaeII RGCGCY 1 cut(s) 393
HaeIII GGCC 1 cut(s) 144
HgaI GACGC 2 cut(s) 96, 388
HhaI GCGC 3 cut(s) 16, 220, 392
Hin1I GRCGYC 2 cut(s) 264, 390
Hin1II CATG 2 cut(s) 32, 328
Hin6I GCGC 3 cut(s) 14, 218, 390
HinP1I GCGC 3 cut(s) 14, 218, 390
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HphI GGTGA 3 cut(s) 37, 73, 241
Hpy166II GTNNAC 2 cut(s) 55, 210
Hpy188I TCNGA 3 cut(s) 139, 154, 455
Hpy8I GTNNAC 2 cut(s) 55, 210
Hpy99I CGWCG 4 cut(s) 90, 143, 269, 272
HpyAV CCTTC 1 cut(s) 58
HpyCH4IV ACGT 3 cut(s) 42, 197, 264
HpyCH4V TGCA 3 cut(s) 32, 229, 396
HpyF10VI GCNNNNNNNGC 6 cut(s) 101, 226, 341, 387, 393, 396
HpyF3I CTNAG 1 cut(s) 441
HpySE526I ACGT 3 cut(s) 42, 197, 264
Hsp92I GRCGYC 2 cut(s) 264, 390
Hsp92II CATG 2 cut(s) 32, 328
HspAI GCGC 3 cut(s) 14, 218, 390
KasI GGCGCC 1 cut(s) 389
Kzo9I GATC 3 cut(s) 154, 164, 321
LmnI GCTCC 2 cut(s) 134, 228
Lsp1109I GCAGC 4 cut(s) 6, 28, 276, 408
LweI GCATC 4 cut(s) 45, 238, 331, 435
MaeII ACGT 3 cut(s) 42, 197, 264
MaeIII GTNAC 4 cut(s) 43, 193, 260, 407
MalI GATC 3 cut(s) 156, 166, 323
MbiI CCGCTC 3 cut(s) 104, 129, 223
MboI GATC 3 cut(s) 154, 164, 321
MboII GAAGA 1 cut(s) 446
MfeI CAATTG 1 cut(s) 336
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 2 cut(s) 336, 369
Mly113I GGCGCC 1 cut(s) 390
MmeI TCCRAC 2 cut(s) 162, 337
MspA1I CMGCKG 3 cut(s) 19, 289, 387
MspR9I CCNGG 1 cut(s) 239
MunI CAATTG 1 cut(s) 336
MvaI CCWGG 1 cut(s) 239
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 6 cut(s) 101, 226, 341, 387, 393, 396
NarI GGCGCC 1 cut(s) 390
NdeII GATC 3 cut(s) 154, 164, 321
NlaIII CATG 2 cut(s) 32, 328
NlaIV GGNNCC 1 cut(s) 391
NmuCI GTSAC 3 cut(s) 43, 193, 260
PcsI WCGNNNNNNNCGW 3 cut(s) 48, 57, 270
PflFI GACNNNGTC 2 cut(s) 191, 266
PkrI GCNGC 7 cut(s) 18, 21, 222, 291, 346, 389, 398
PluTI GGCGCC 1 cut(s) 393
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 391
PspPI GGNCC 1 cut(s) 207
PstI CTGCAG 1 cut(s) 398
PstNI CAGNNNCTG 1 cut(s) 402
PsyI GACNNNGTC 2 cut(s) 191, 266
PvuII CAGCTG 2 cut(s) 19, 289
SatI GCNGC 7 cut(s) 17, 20, 221, 290, 345, 388, 397
Sau3AI GATC 3 cut(s) 154, 164, 321
Sau96I GGNCC 1 cut(s) 207
ScrFI CCNGG 1 cut(s) 239
SduI GDGCHC 1 cut(s) 66
SfaNI GCATC 4 cut(s) 45, 238, 331, 435
SfcI CTRYAG 1 cut(s) 394
SfoI GGCGCC 1 cut(s) 391
SinI GGWCC 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 2 cut(s) 336, 369
SsiI CCGC 8 cut(s) 73, 102, 127, 221, 344, 347, 379, 387
SspDI GGCGCC 1 cut(s) 389
StyD4I CCNGG 1 cut(s) 237
StyI CCWWGG 1 cut(s) 9
TaiI ACGT 3 cut(s) 45, 200, 267
TasI AATT 2 cut(s) 336, 369
TauI GCSGC 3 cut(s) 223, 347, 390
TseFI GTSAC 3 cut(s) 43, 193, 260
TseI GCWGC 4 cut(s) 16, 19, 289, 396
Tsp45I GTSAC 3 cut(s) 43, 193, 260
TspGWI ACGGA 1 cut(s) 329
Tth111I GACNNNGTC 2 cut(s) 191, 266
VpaK11BI GGWCC 1 cut(s) 207
XagI CCTNNNNNAGG 1 cut(s) 453
ZraI GACGTC 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.