Rorug03G0071800

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000638
Physical Location & Seq
Forward (+)
5716887 .. 5722333
5447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0071800.1

Sequence Viewer

Length: 633 bp
ATGTTATTTGTGGTGATCATGATTTTGATCGTGATCACCAAAATTGGGCATGTATCAGCTGATCTTGGTGCCTGCCCAAAATGTGGTAGCCTAGAAGTTCCATACCCTTTTAGCACTGATGATAGCTGTGGAGACCCTAGATATAAAATCTACTGCAACAATGGCAATGAACTTCAGTTCATGTCAGCAGAAGGGTTTAAGTACAAGATCCTCAGCATCGACTCGAGTGCCAACAAGCTCATTATACACCCACCTGATTTCTTAGTAGAGAATAACACCCCTACATGTTATTCTTCAGATTTCTCTTCACAAGGCTTAAGACTCGATGAGCGCTTGCCCTTCAACATTTCTACTCGTAACACCGTGATGCTGTTCAATTGCTCGGATAATATTCTCCGCTCGCCTCTAAATTGTTCCTCAAACAGCTTCTGCAGGCAGTTTGAGGATAAGATTGAGGCGTGTAGAGGTACCCTTTGCTGCCATTTCTTGAAGGATTCCCACATGACTTCATATATGATCAGGGTCAGGCTTGGAGGCTGCACTGCTTATACTTCTGTTGTCGATATTCGACCTCAAGATCCAGTTGATAACTGGAATTATGGAATTGAGCTTCAATGGTTGCCTCCTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

210

Amino Acids

23.68

Weight (kDa)

5.53

Isoelectric Point (pI)

53.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 25 - 82 1e-11 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 467
AccB1I GGYRCC 2 cut(s) 68, 467
AccB7I CCANNNNNTGG 1 cut(s) 83
AccBSI CCGCTC 1 cut(s) 399
AciI CCGC 1 cut(s) 397
AclWI GGATC 2 cut(s) 202, 572
AcuI CTGAAG 2 cut(s) 158, 279
AfaI GTAC 2 cut(s) 203, 469
AfeI AGCGCT 1 cut(s) 332
AfiI CCNNNNNNNGG 2 cut(s) 45, 83
AflII CTTAAG 1 cut(s) 316
AflIII ACRYGT 1 cut(s) 284
AgsI TTSAA 4 cut(s) 343, 376, 490, 614
AluBI AGCT 5 cut(s) 59, 126, 238, 426, 610
AluI AGCT 5 cut(s) 59, 126, 238, 426, 610
Alw26I GTCTC 1 cut(s) 126
AlwI GGATC 2 cut(s) 202, 572
AlwNI CAGNNNCTG 1 cut(s) 429
Ama87I CYCGRG 1 cut(s) 223
Aor51HI AGCGCT 1 cut(s) 332
ApeKI GCWGC 2 cut(s) 477, 537
Asp718I GGTACC 1 cut(s) 467
AspLEI GCGC 1 cut(s) 333
AsuHPI GGTGA 2 cut(s) 25, 28
AvaI CYCGRG 1 cut(s) 223
BanI GGYRCC 2 cut(s) 68, 467
BbvCI CCTCAGC 1 cut(s) 212
BbvI GCAGC 2 cut(s) 464, 524
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BclI TGATCA 3 cut(s) 15, 33, 516
BcoDI GTCTC 1 cut(s) 126
BfaI CTAG 2 cut(s) 92, 138
BfmI CTRYAG 1 cut(s) 430
BfoI RGCGCY 1 cut(s) 334
BfrI CTTAAG 1 cut(s) 316
BisI GCNGC 2 cut(s) 478, 538
BlsI GCNGC 2 cut(s) 479, 539
BmeT110I CYCGRG 1 cut(s) 223
BmiI GGNNCC 2 cut(s) 70, 469
BmsI GCATC 2 cut(s) 225, 357
Bpu10I CCTNAGC 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 558
BsaBI GATNNNNATC 2 cut(s) 26, 32
BsaI GGTCTC 1 cut(s) 126
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 83
Bse1I ACTGG 2 cut(s) 581, 596
Bse3DI GCAATG 1 cut(s) 172
Bse8I GATNNNNATC 2 cut(s) 26, 32
BseJI GATNNNNATC 2 cut(s) 26, 32
BseLI CCNNNNNNNGG 2 cut(s) 45, 83
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 226
BseNI ACTGG 2 cut(s) 581, 596
BseXI GCAGC 2 cut(s) 464, 524
BsgI GTGCAG 1 cut(s) 523
BshNI GGYRCC 2 cut(s) 68, 467
BsiHKCI CYCGRG 1 cut(s) 223
BslI CCNNNNNNNGG 2 cut(s) 45, 83
BsmAI GTCTC 1 cut(s) 126
Bso31I GGTCTC 1 cut(s) 126
BsoBI CYCGRG 1 cut(s) 223
Bsp143I GATC 7 cut(s) 15, 27, 33, 61, 207, 516, 577
BspACI CCGC 1 cut(s) 397
BspCNI CTCAG 1 cut(s) 225
BspHI TCATGA 1 cut(s) 18
BspLI GGNNCC 2 cut(s) 70, 469
BspMAI CTGCAG 1 cut(s) 434
BspPI GGATC 2 cut(s) 202, 572
BspT107I GGYRCC 2 cut(s) 68, 467
BspTI CTTAAG 1 cut(s) 316
BspTNI GGTCTC 1 cut(s) 126
BsrBI CCGCTC 1 cut(s) 399
BsrDI GCAATG 1 cut(s) 172
BsrI ACTGG 2 cut(s) 581, 596
BssMI GATC 7 cut(s) 15, 27, 33, 61, 207, 516, 577
Bst4CI ACNGT 1 cut(s) 364
Bst6I CTCTTC 1 cut(s) 310
BstAFI CTTAAG 1 cut(s) 316
BstC8I GCNNGC 4 cut(s) 73, 335, 401, 434
BstDEI CTNAG 2 cut(s) 212, 262
BstH2I RGCGCY 1 cut(s) 334
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 7 cut(s) 18, 30, 36, 64, 210, 519, 580
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 7 cut(s) 15, 27, 33, 61, 207, 516, 577
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNSI RCATGY 2 cut(s) 53, 288
BstSFI CTRYAG 1 cut(s) 430
BstV1I GCAGC 2 cut(s) 464, 524
BstX2I RGATCY 2 cut(s) 207, 577
BstYI RGATCY 2 cut(s) 207, 577
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 2 cut(s) 114, 540
Cac8I GCNNGC 4 cut(s) 73, 335, 401, 434
CaiI CAGNNNCTG 1 cut(s) 429
CciI TCATGA 1 cut(s) 18
CfoI GCGC 1 cut(s) 333
Csp6I GTAC 2 cut(s) 202, 468
CviAII CATG 5 cut(s) 19, 50, 181, 285, 502
CviJI RGCY 9 cut(s) 59, 90, 126, 238, 315, 426, 529, 537, 610
CviKI_1 RGCY 9 cut(s) 59, 90, 126, 238, 315, 426, 529, 537, 610
CviQI GTAC 2 cut(s) 202, 468
DdeI CTNAG 2 cut(s) 212, 262
DpnI GATC 7 cut(s) 17, 29, 35, 63, 209, 518, 579
DpnII GATC 7 cut(s) 15, 27, 33, 61, 207, 516, 577
Eam1104I CTCTTC 1 cut(s) 310
EarI CTCTTC 1 cut(s) 310
Eco31I GGTCTC 1 cut(s) 126
Eco47III AGCGCT 1 cut(s) 332
Eco57I CTGAAG 2 cut(s) 158, 279
Eco88I CYCGRG 1 cut(s) 223
FaeI CATG 5 cut(s) 22, 53, 184, 288, 505
FatI CATG 5 cut(s) 18, 49, 180, 284, 501
FbaI TGATCA 3 cut(s) 15, 33, 516
Fnu4HI GCNGC 2 cut(s) 478, 538
Fsp4HI GCNGC 2 cut(s) 478, 538
FspBI CTAG 2 cut(s) 92, 138
GlaI GCGC 1 cut(s) 332
GluI GCNGC 2 cut(s) 478, 538
HaeII RGCGCY 1 cut(s) 334
HhaI GCGC 1 cut(s) 333
Hin1II CATG 5 cut(s) 22, 53, 184, 288, 505
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HinfI GANTC 3 cut(s) 221, 321, 494
HphI GGTGA 2 cut(s) 25, 28
Hpy188I TCNGA 2 cut(s) 298, 385
Hpy188III TCNNGA 4 cut(s) 19, 31, 487, 575
HpyAV CCTTC 3 cut(s) 185, 349, 484
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4V TGCA 3 cut(s) 156, 432, 540
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 2 cut(s) 212, 262
Hsp92II CATG 5 cut(s) 22, 53, 184, 288, 505
HspAI GCGC 1 cut(s) 331
KpnI GGTACC 1 cut(s) 471
Ksp22I TGATCA 3 cut(s) 15, 33, 516
Kzo9I GATC 7 cut(s) 15, 27, 33, 61, 207, 516, 577
LpnPI CCDG 7 cut(s) 85, 267, 418, 505, 511, 577, 594
Lsp1109I GCAGC 2 cut(s) 464, 524
LweI GCATC 2 cut(s) 225, 357
MaeI CTAG 2 cut(s) 92, 138
MaeIII GTNAC 1 cut(s) 356
MalI GATC 7 cut(s) 17, 29, 35, 63, 209, 518, 579
MbiI CCGCTC 1 cut(s) 399
MboI GATC 7 cut(s) 15, 27, 33, 61, 207, 516, 577
MboII GAAGA 2 cut(s) 285, 297
MfeI CAATTG 1 cut(s) 376
MflI RGATCY 2 cut(s) 207, 577
MluCI AATT 5 cut(s) 42, 376, 409, 595, 603
MlyI GAGTC 2 cut(s) 215, 315
MnlI CCTC 9 cut(s) 221, 414, 427, 436, 448, 458, 527, 582, 633
MseI TTAA 2 cut(s) 198, 317
MslI CAYNNNNRTG 1 cut(s) 365
MspA1I CMGCKG 1 cut(s) 59
MspCI CTTAAG 1 cut(s) 316
MunI CAATTG 1 cut(s) 376
MwoI GCNNNNNNNGC 1 cut(s) 162
NdeII GATC 7 cut(s) 15, 27, 33, 61, 207, 516, 577
NlaIII CATG 5 cut(s) 22, 53, 184, 288, 505
NlaIV GGNNCC 2 cut(s) 70, 469
NspI RCATGY 2 cut(s) 53, 288
PaeR7I CTCGAG 1 cut(s) 223
PagI TCATGA 1 cut(s) 18
PciI ACATGT 1 cut(s) 284
PfeI GAWTC 1 cut(s) 494
PflMI CCANNNNNTGG 1 cut(s) 83
PkrI GCNGC 2 cut(s) 479, 539
PleI GAGTC 2 cut(s) 215, 315
PpsI GAGTC 2 cut(s) 215, 315
PscI ACATGT 1 cut(s) 284
PspN4I GGNNCC 2 cut(s) 70, 469
PspXI VCTCGAGB 1 cut(s) 223
PstI CTGCAG 1 cut(s) 434
PstNI CAGNNNCTG 1 cut(s) 429
PsuI RGATCY 2 cut(s) 207, 577
PvuII CAGCTG 1 cut(s) 59
RsaI GTAC 2 cut(s) 203, 469
RsaNI GTAC 2 cut(s) 202, 468
RseI CAYNNNNRTG 1 cut(s) 365
SaqAI TTAA 2 cut(s) 198, 317
SatI GCNGC 2 cut(s) 478, 538
Sau3AI GATC 7 cut(s) 15, 27, 33, 61, 207, 516, 577
SchI GAGTC 2 cut(s) 215, 315
SetI ASST 8 cut(s) 61, 128, 240, 256, 428, 469, 574, 612
SfaNI GCATC 2 cut(s) 225, 357
SfcI CTRYAG 1 cut(s) 430
Sfr274I CTCGAG 1 cut(s) 223
SlaI CTCGAG 1 cut(s) 223
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 3 cut(s) 223, 316, 573
SmoI CTYRAG 3 cut(s) 223, 316, 573
Sse9I AATT 5 cut(s) 42, 376, 409, 595, 603
SsiI CCGC 1 cut(s) 397
SspI AATATT 1 cut(s) 391
SspMI CTAG 2 cut(s) 92, 138
TaaI ACNGT 1 cut(s) 364
TaqI TCGA 5 cut(s) 219, 224, 324, 561, 568
TasI AATT 5 cut(s) 42, 376, 409, 595, 603
TatI WGTACW 1 cut(s) 201
TfiI GAWTC 1 cut(s) 494
Tru1I TTAA 2 cut(s) 198, 317
Tru9I TTAA 2 cut(s) 198, 317
TscAI CASTG 2 cut(s) 121, 547
TseI GCWGC 2 cut(s) 477, 537
TspDTI ATGAA 3 cut(s) 169, 183, 498
TspRI CASTG 2 cut(s) 121, 547
Van91I CCANNNNNTGG 1 cut(s) 83
Vha464I CTTAAG 1 cut(s) 316
XceI RCATGY 2 cut(s) 53, 288
XcmI CCANNNNNNNNNTGG 1 cut(s) 588
XhoI CTCGAG 1 cut(s) 223
XspI CTAG 2 cut(s) 92, 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.