Rorug03G0071700

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
5713007 .. 5715530
2524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0071700.1

Sequence Viewer

Length: 642 bp
ATGAGTTCACTCGCTGCGAGATTTTCCAAGTTCATCAGAGTCTCTGTTCCTTCCTCGCAAACTTCCTCACTGGTTGGCGGGCAAAGAAGCTCGAAGTTATGGTACTCAAGCGGCTCAATCGACAGTGACACTAATGACACAAAACAAGTTGATGCCGAAGAAGATATTGACGATTTTCTTGGTGGCTTGAAAGATACAAATATGCAAGCCCAAGGTGTGGATCCCAAGAGGGGCTGGGGATTTCGCGGTGTGCACAAGGCAATTATTTGTGGAAGAGTTGGACAATCCCCAGTGCAGAAGATCTTGAGGAATGGCCGAACTGTAACCATCTTCACTGTTGGGACGGGGGGCATGTTTGACCAGAGATTACTGGGAAAGGACTTGCCAAGACCTGCTCAGTGGCACCGAATTGCTGTGCATAATGACGCACTTGGGGCTTATGCAGTTAAACAATTTGTTAAGAATTCATCAGTTTATGTTGAGGGTGACATCGAAACTAGAGTTTACAATGATAGCATCAATGGTGAAGTTAAGAATATTCCAGAGATCTGCATTCGTCACGATGGGAAGATCCGTCTTATAAAGAGTGGAGAAAGCATCAGCAGTATGTCCTTGGATGATCTGCGAGAAGACTTACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

213

Amino Acids

23.43

Weight (kDa)

8.52

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSB PF00436 84 - 186 1e-18 Single-strand binding protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 581
Acc36I ACCTGC 1 cut(s) 400
AccB1I GGYRCC 1 cut(s) 402
AccB7I CCANNNNNTGG 1 cut(s) 217
AccII CGCG 1 cut(s) 246
AciI CCGC 3 cut(s) 78, 111, 246
AclWI GGATC 3 cut(s) 215, 228, 565
AcoI YGGCCR 1 cut(s) 313
AcsI RAATTY 1 cut(s) 463
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 2 cut(s) 217, 230
AgsI TTSAA 1 cut(s) 190
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 1 cut(s) 46
Alw44I GTGCAC 1 cut(s) 251
AlwI GGATC 3 cut(s) 215, 228, 565
AoxI GGCC 1 cut(s) 313
ApaLI GTGCAC 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 463
AsuHPI GGTGA 2 cut(s) 497, 536
BaeGI GKGCMC 1 cut(s) 255
BamHI GGATCC 1 cut(s) 220
BanI GGYRCC 1 cut(s) 402
BarI GAAGNNNNNNTAC 2 cut(s) 86, 118
BbsI GAAGAC 1 cut(s) 636
Bbv12I GWGCWC 1 cut(s) 255
BccI CCATC 2 cut(s) 335, 557
BcoDI GTCTC 1 cut(s) 46
BfaI CTAG 1 cut(s) 498
BfuAI ACCTGC 1 cut(s) 400
BglII AGATCT 2 cut(s) 300, 546
BisI GCNGC 2 cut(s) 15, 112
BlsI GCNGC 2 cut(s) 16, 113
BmiI GGNNCC 2 cut(s) 222, 404
BmrI ACTGGG 2 cut(s) 284, 380
BmsI GCATC 3 cut(s) 142, 525, 606
BmuI ACTGGG 2 cut(s) 284, 380
BpiI GAAGAC 1 cut(s) 636
BpuEI CTTGAG 2 cut(s) 91, 325
BsaJI CCNNGG 2 cut(s) 211, 612
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 230
Bse1I ACTGG 3 cut(s) 75, 290, 375
BseDI CCNNGG 2 cut(s) 211, 612
BseGI GGATG 1 cut(s) 622
BseLI CCNNNNNNNGG 2 cut(s) 217, 230
BseMII CTCAG 1 cut(s) 410
BseNI ACTGG 3 cut(s) 75, 290, 375
BseSI GKGCMC 1 cut(s) 255
BseYI CCCAGC 1 cut(s) 234
BsgI GTGCAG 1 cut(s) 314
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 1 cut(s) 315
BshNI GGYRCC 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 255
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 2 cut(s) 217, 230
BsmAI GTCTC 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 355
BsmI GAATGC 1 cut(s) 552
BsnI GGCC 1 cut(s) 315
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 5 cut(s) 220, 300, 546, 570, 619
BspACI CCGC 3 cut(s) 78, 111, 246
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 1 cut(s) 409
BspFNI CGCG 1 cut(s) 246
BspLI GGNNCC 2 cut(s) 222, 404
BspMI ACCTGC 1 cut(s) 400
BspPI GGATC 3 cut(s) 215, 228, 565
BspT107I GGYRCC 1 cut(s) 402
BsrI ACTGG 3 cut(s) 75, 290, 375
BssECI CCNNGG 2 cut(s) 211, 612
BssMI GATC 5 cut(s) 220, 300, 546, 570, 619
BssT1I CCWWGG 2 cut(s) 211, 612
Bst4CI ACNGT 3 cut(s) 125, 322, 337
Bst6I CTCTTC 1 cut(s) 268
BstC8I GCNNGC 2 cut(s) 80, 207
BstDEI CTNAG 2 cut(s) 396, 639
BstF5I GGATG 1 cut(s) 622
BstFNI CGCG 1 cut(s) 246
BstKTI GATC 5 cut(s) 223, 303, 549, 573, 622
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 5 cut(s) 220, 300, 546, 570, 619
BstMWI GCNNNNNNNGC 1 cut(s) 434
BstNSI RCATGY 1 cut(s) 355
BstSLI GKGCMC 1 cut(s) 255
BstUI CGCG 1 cut(s) 246
BstV2I GAAGAC 1 cut(s) 636
BstX2I RGATCY 4 cut(s) 220, 300, 546, 570
BstYI RGATCY 4 cut(s) 220, 300, 546, 570
BsuRI GGCC 1 cut(s) 315
BtsCI GGATG 1 cut(s) 622
BtsIMutI CAGTG 5 cut(s) 68, 130, 297, 333, 404
BveI ACCTGC 1 cut(s) 400
Cac8I GCNNGC 2 cut(s) 80, 207
CseI GACGC 1 cut(s) 434
Csp6I GTAC 1 cut(s) 103
CviAII CATG 1 cut(s) 352
CviJI RGCY 7 cut(s) 90, 114, 186, 209, 234, 315, 437
CviKI_1 RGCY 7 cut(s) 90, 114, 186, 209, 234, 315, 437
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 2 cut(s) 396, 639
DpnI GATC 5 cut(s) 222, 302, 548, 572, 621
DpnII GATC 5 cut(s) 220, 300, 546, 570, 619
EaeI YGGCCR 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
Eco130I CCWWGG 2 cut(s) 211, 612
EcoRI GAATTC 1 cut(s) 463
EcoT14I CCWWGG 2 cut(s) 211, 612
ErhI CCWWGG 2 cut(s) 211, 612
FaeI CATG 1 cut(s) 355
FaiI YATR 8 cut(s) 100, 203, 353, 420, 441, 477, 581, 608
FaqI GGGAC 1 cut(s) 355
FatI CATG 1 cut(s) 351
FauI CCCGC 1 cut(s) 71
Fnu4HI GCNGC 2 cut(s) 15, 112
FokI GGATG 1 cut(s) 629
Fsp4HI GCNGC 2 cut(s) 15, 112
FspBI CTAG 1 cut(s) 498
GluI GCNGC 2 cut(s) 15, 112
GsaI CCCAGC 1 cut(s) 238
HaeIII GGCC 1 cut(s) 315
HgaI GACGC 1 cut(s) 434
Hin1II CATG 1 cut(s) 355
HinfI GANTC 1 cut(s) 39
HphI GGTGA 2 cut(s) 497, 536
Hpy166II GTNNAC 3 cut(s) 8, 253, 505
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 3 cut(s) 304, 542, 560
Hpy8I GTNNAC 3 cut(s) 8, 253, 505
HpyAV CCTTC 1 cut(s) 60
HpyCH4III ACNGT 3 cut(s) 125, 322, 337
HpyCH4V TGCA 6 cut(s) 205, 253, 295, 418, 443, 552
HpyF10VI GCNNNNNNNGC 1 cut(s) 434
HpyF3I CTNAG 2 cut(s) 396, 639
Hsp92II CATG 1 cut(s) 355
Kzo9I GATC 5 cut(s) 220, 300, 546, 570, 619
LpnPI CCDG 7 cut(s) 56, 220, 303, 356, 374, 405, 555
LweI GCATC 3 cut(s) 142, 525, 606
MaeI CTAG 1 cut(s) 498
MaeIII GTNAC 4 cut(s) 125, 322, 485, 557
MalI GATC 5 cut(s) 222, 302, 548, 572, 621
MboI GATC 5 cut(s) 220, 300, 546, 570, 619
MboII GAAGA 7 cut(s) 170, 173, 285, 310, 322, 580, 641
MflI RGATCY 4 cut(s) 220, 300, 546, 570
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 4 cut(s) 261, 408, 452, 463
MlyI GAGTC 1 cut(s) 48
MmeI TCCRAC 1 cut(s) 259
MnlI CCTC 5 cut(s) 64, 76, 222, 300, 475
MseI TTAA 3 cut(s) 447, 459, 531
Mva1269I GAATGC 1 cut(s) 552
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 434
NdeII GATC 5 cut(s) 220, 300, 546, 570, 619
NlaIII CATG 1 cut(s) 355
NlaIV GGNNCC 2 cut(s) 222, 404
NmuCI GTSAC 3 cut(s) 125, 485, 557
NspI RCATGY 1 cut(s) 355
PctI GAATGC 1 cut(s) 552
PflMI CCANNNNNTGG 1 cut(s) 217
PkrI GCNGC 2 cut(s) 16, 113
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PsiI TTATAA 1 cut(s) 581
PspFI CCCAGC 1 cut(s) 234
PspN4I GGNNCC 2 cut(s) 222, 404
PsuI RGATCY 4 cut(s) 220, 300, 546, 570
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SaqAI TTAA 3 cut(s) 447, 459, 531
SatI GCNGC 2 cut(s) 15, 112
Sau3AI GATC 5 cut(s) 220, 300, 546, 570, 619
SchI GAGTC 1 cut(s) 48
SduI GDGCHC 1 cut(s) 255
SetI ASST 4 cut(s) 92, 217, 394, 640
SfaNI GCATC 3 cut(s) 142, 525, 606
SmlI CTYRAG 2 cut(s) 106, 304
SmoI CTYRAG 2 cut(s) 106, 304
Sse9I AATT 4 cut(s) 261, 408, 452, 463
SsiI CCGC 3 cut(s) 78, 111, 246
SspI AATATT 1 cut(s) 538
SspMI CTAG 1 cut(s) 498
StyI CCWWGG 2 cut(s) 211, 612
TaaI ACNGT 3 cut(s) 125, 322, 337
TaqI TCGA 3 cut(s) 92, 120, 492
TasI AATT 4 cut(s) 261, 408, 452, 463
TauI GCSGC 1 cut(s) 114
Tru1I TTAA 3 cut(s) 447, 459, 531
Tru9I TTAA 3 cut(s) 447, 459, 531
TscAI CASTG 5 cut(s) 75, 130, 297, 340, 404
TseFI GTSAC 3 cut(s) 125, 485, 557
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 3 cut(s) 125, 485, 557
TspDTI ATGAA 2 cut(s) 22, 456
TspGWI ACGGA 1 cut(s) 563
TspRI CASTG 5 cut(s) 75, 130, 297, 340, 404
Van91I CCANNNNNTGG 1 cut(s) 217
VneI GTGCAC 1 cut(s) 251
XapI RAATTY 1 cut(s) 463
XceI RCATGY 1 cut(s) 355
XspI CTAG 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.