Rmu_sc0016170.1_g000008

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016170.1
OG0000107
Physical Location & Seq
Reverse (-)
38609 .. 39088
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016170.1_g000008.1.cds

Sequence Viewer

Length: 480 bp
atgactatggctagggggactataggctacattgcacctgaagtgttctcccggaattttggaaatgtgtcatataagtcagatgtctatagttttggaaagttgttgctcgagattgtaggagggaggaagaatattggtgaaaccatggataacactggggaagtatactacccagaatggatacataatcttttagatgaaggggaagaccttcgagtccatattggggaagaaggatcgagaatagattctcgaattccaaaagaactagcaattgtaggcctttggtgtatccaatggcacccaatgaatcgtccatccatgaaatcagtggttcagatgttgggaggaagagaaaacttaaccatgccacctaatccttttgcccctacaggtcctacaagaacaaatgcaacaagtcgcccggctgcaagacgcttcaacctcgacttagaagcaattgttgaattagagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase

Protein Analysis

159

Amino Acids

17.87

Weight (kDa)

5.67

Isoelectric Point (pI)

40.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
AccB1I GGYRCC 1 cut(s) 303
AccI GTMKAC 1 cut(s) 168
AclWI GGATC 1 cut(s) 247
AcsI RAATTY 2 cut(s) 55, 258
AcuI CTGAAG 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 2 cut(s) 445, 470
AlwI GGATC 1 cut(s) 247
Ama87I CYCGRG 1 cut(s) 110
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 1 cut(s) 431
ApoI RAATTY 2 cut(s) 55, 258
Asp700I GAANNNNTTC 2 cut(s) 213, 250
AspS9I GGNCC 1 cut(s) 398
AsuC2I CCSGG 2 cut(s) 52, 428
AsuHPI GGTGA 1 cut(s) 152
AvaI CYCGRG 1 cut(s) 110
AvaII GGWCC 1 cut(s) 398
BanI GGYRCC 1 cut(s) 303
BbsI GAAGAC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 418
BccI CCATC 1 cut(s) 328
BciVI GTATCC 2 cut(s) 177, 305
BcnI CCSGG 2 cut(s) 52, 428
BfaI CTAG 2 cut(s) 12, 272
BfmI CTRYAG 3 cut(s) 21, 88, 393
BfuI GTATCC 2 cut(s) 177, 305
BisI GCNGC 1 cut(s) 432
BlsI GCNGC 1 cut(s) 433
Bme1390I CCNGG 2 cut(s) 52, 428
Bme18I GGWCC 1 cut(s) 398
BmeT110I CYCGRG 1 cut(s) 110
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 1 cut(s) 305
BmrFI CCNGG 2 cut(s) 52, 428
BmrI ACTGGG 1 cut(s) 168
BmuI ACTGGG 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 216
BpuMI CCSGG 2 cut(s) 52, 428
BsaJI CCNNGG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 163
Bse3DI GCAATG 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 320
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMI GCAATG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 163
BseXI GCAGC 1 cut(s) 418
BshFI GGCC 1 cut(s) 285
BshNI GGYRCC 1 cut(s) 303
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 2 cut(s) 52, 428
BslFI GGGAC 1 cut(s) 31
BslI CCNNNNNNNGG 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 31
BsnI GGCC 1 cut(s) 285
BsoBI CYCGRG 1 cut(s) 110
Bsp143I GATC 1 cut(s) 239
Bsp19I CCATGG 1 cut(s) 147
BspANI GGCC 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 305
BspPI GGATC 1 cut(s) 247
BspT107I GGYRCC 1 cut(s) 303
BsrDI GCAATG 1 cut(s) 30
BsrI ACTGG 1 cut(s) 163
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 1 cut(s) 239
BssNAI GTATAC 1 cut(s) 169
BssT1I CCWWGG 1 cut(s) 147
Bst1107I GTATAC 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 349
BstDEI CTNAG 1 cut(s) 454
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 320
BstKTI GATC 1 cut(s) 242
BstMBI GATC 1 cut(s) 239
BstSCI CCNGG 2 cut(s) 50, 426
BstSFI CTRYAG 3 cut(s) 21, 88, 393
BstV1I GCAGC 1 cut(s) 418
BstV2I GAAGAC 1 cut(s) 216
BstZ17I GTATAC 1 cut(s) 169
BsuI GTATCC 2 cut(s) 177, 305
BsuRI GGCC 1 cut(s) 285
BtgI CCRYGG 1 cut(s) 147
BtsCI GGATG 1 cut(s) 320
BtsIMutI CAGTG 2 cut(s) 156, 339
Cfr13I GGNCC 1 cut(s) 398
CseI GACGC 1 cut(s) 447
CviAII CATG 3 cut(s) 148, 325, 370
CviJI RGCY 4 cut(s) 11, 27, 285, 431
CviKI_1 RGCY 4 cut(s) 11, 27, 285, 431
DdeI CTNAG 1 cut(s) 454
DpnI GATC 1 cut(s) 241
DpnII GATC 1 cut(s) 239
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
Eam1104I CTCTTC 1 cut(s) 349
EarI CTCTTC 1 cut(s) 349
Eco130I CCWWGG 1 cut(s) 147
Eco147I AGGCCT 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 398
Eco57I CTGAAG 1 cut(s) 60
Eco88I CYCGRG 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 398
EcoRI GAATTC 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 3 cut(s) 151, 328, 373
FaqI GGGAC 1 cut(s) 31
FatI CATG 3 cut(s) 147, 324, 369
FblI GTMKAC 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 432
FokI GGATG 1 cut(s) 307
Fsp4HI GCNGC 1 cut(s) 432
FspBI CTAG 2 cut(s) 12, 272
GluI GCNGC 1 cut(s) 432
HaeIII GGCC 1 cut(s) 285
HapII CCGG 2 cut(s) 52, 428
HgaI GACGC 1 cut(s) 447
Hin1II CATG 3 cut(s) 151, 328, 373
HinfI GANTC 3 cut(s) 219, 251, 313
HpaII CCGG 2 cut(s) 52, 428
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 2 cut(s) 82, 342
Hpy188III TCNNGA 3 cut(s) 112, 243, 255
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 3 cut(s) 197, 224, 230
HpyCH4V TGCA 3 cut(s) 35, 416, 434
HpyF3I CTNAG 1 cut(s) 454
Hsp92II CATG 3 cut(s) 151, 328, 373
Kzo9I GATC 1 cut(s) 239
LpnPI CCDG 6 cut(s) 51, 65, 144, 189, 381, 441
Lsp1109I GCAGC 1 cut(s) 418
MaeI CTAG 2 cut(s) 12, 272
MalI GATC 1 cut(s) 241
MboI GATC 1 cut(s) 239
MboII GAAGA 4 cut(s) 142, 221, 245, 366
MfeI CAATTG 2 cut(s) 276, 462
MluCI AATT 5 cut(s) 55, 258, 276, 462, 470
MlyI GAGTC 1 cut(s) 228
MnlI CCTC 4 cut(s) 116, 120, 344, 458
MroXI GAANNNNTTC 2 cut(s) 213, 250
MseI TTAA 1 cut(s) 365
MspI CCGG 2 cut(s) 52, 428
MspR9I CCNGG 2 cut(s) 52, 428
MunI CAATTG 2 cut(s) 276, 462
NciI CCSGG 2 cut(s) 52, 428
NcoI CCATGG 1 cut(s) 147
NdeII GATC 1 cut(s) 239
NlaIII CATG 3 cut(s) 151, 328, 373
NlaIV GGNNCC 1 cut(s) 305
PaeR7I CTCGAG 1 cut(s) 110
PceI AGGCCT 1 cut(s) 285
PdmI GAANNNNTTC 2 cut(s) 213, 250
PfeI GAWTC 2 cut(s) 251, 313
PfoI TCCNGGA 1 cut(s) 50
PkrI GCNGC 1 cut(s) 433
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PpuMI RGGWCCY 1 cut(s) 398
Psp5II RGGWCCY 1 cut(s) 398
PspN4I GGNNCC 1 cut(s) 305
PspPI GGNCC 1 cut(s) 398
PspPPI RGGWCCY 1 cut(s) 398
SaqAI TTAA 1 cut(s) 365
SatI GCNGC 1 cut(s) 432
Sau3AI GATC 1 cut(s) 239
Sau96I GGNCC 1 cut(s) 398
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 2 cut(s) 52, 428
SetI ASST 5 cut(s) 40, 216, 379, 400, 450
SfcI CTRYAG 3 cut(s) 21, 88, 393
Sfr274I CTCGAG 1 cut(s) 110
SinI GGWCC 1 cut(s) 398
SlaI CTCGAG 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 5 cut(s) 55, 258, 276, 462, 470
SseBI AGGCCT 1 cut(s) 285
SspI AATATT 1 cut(s) 136
SspMI CTAG 2 cut(s) 12, 272
StuI AGGCCT 1 cut(s) 285
StyD4I CCNGG 2 cut(s) 50, 426
StyI CCWWGG 1 cut(s) 147
TaqI TCGA 5 cut(s) 111, 217, 242, 256, 450
TasI AATT 5 cut(s) 55, 258, 276, 462, 470
TfiI GAWTC 2 cut(s) 251, 313
Tru1I TTAA 1 cut(s) 365
Tru9I TTAA 1 cut(s) 365
TscAI CASTG 2 cut(s) 163, 339
TseI GCWGC 1 cut(s) 431
TspDTI ATGAA 3 cut(s) 216, 326, 341
TspRI CASTG 2 cut(s) 163, 339
VpaK11BI GGWCC 1 cut(s) 398
XapI RAATTY 2 cut(s) 55, 258
XcmI CCANNNNNNNNNTGG 1 cut(s) 331
XhoI CTCGAG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 168
XmnI GAANNNNTTC 2 cut(s) 213, 250
XspI CTAG 2 cut(s) 12, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.