Rh5CG351200

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000107
Physical Location & Seq
Reverse (-)
40597730 .. 40598479
750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG351200.1

Sequence Viewer

Length: 750 bp
ATGCTTCTGACTATGAGTTTCTTGTTCTGGTTGCTCCTGATATTTGTAGAAGTAGATGTTGTGCATGGTGGAGGAGTAGGCCTTGATGATTGCACAGAAACAAGATGCAGCAACGATGGCCCAGCCATCCGATTCCCATTTCGACTTACAGATAGGCAACCAATCGATTGTGGTTTTCCGGGTTTTGATCTTTCATGCACCAAAGACAACCAGACAGTGCTTGAGATGCCATCGTCACATGAGCTCTATGTTACATGGATCAACTACACATCACAGGAAATCGGAGAATATCCTCACCGTGAGTGCATGGCCAGAGAAATTTTCTACCACGGTTCTTCTTCTCCCTTCAAATTTGTAGGCAACGCAAGCTTGTTCAGTTGCCCACCATCAACTGTGAGAGATCAATATATTACAGATTCTGATTCCTACAATCATTGTCTGGCAAGATTAAGCCCTTGCCATCGTAATACAGGCAACCAGATTTACGCAAGCTTGTATAGTTATGATTATTGTCCTATTGATTTAATGCCCCTAGTGTCTTGTACTATGGTTCTTGACTACGCATTAGCCCCTAGTGTCTTGAACTACTATGGTGTCTCTAGTTCTGAATGGATTCTCCGCTGGTCCATACCATCTTGTCAACACTGCGAAGAGATGGGCAAGGCATGTCGGTTGAAGAAAGAATTCACAAACCGTACTGATCCCCAGACTCAATGCATAGATGTCCCCAGACACAAAGGTATCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

249

Amino Acids

28.34

Weight (kDa)

5.29

Isoelectric Point (pI)

62.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 31 - 94 5.1e-17 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 619
AclWI GGATC 2 cut(s) 266, 695
AcoI YGGCCR 1 cut(s) 309
AcsI RAATTY 3 cut(s) 318, 350, 683
AfaI GTAC 2 cut(s) 544, 697
AgsI TTSAA 3 cut(s) 349, 583, 676
AluBI AGCT 3 cut(s) 244, 369, 492
AluI AGCT 3 cut(s) 244, 369, 492
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 601
AlwI GGATC 2 cut(s) 266, 695
AlwNI CAGNNNCTG 1 cut(s) 419
AoxI GGCC 3 cut(s) 79, 118, 309
ApeKI GCWGC 1 cut(s) 108
ApoI RAATTY 3 cut(s) 318, 350, 683
Asp700I GAANNNNTTC 2 cut(s) 612, 683
AspS9I GGNCC 2 cut(s) 119, 624
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 287
AvaII GGWCC 1 cut(s) 624
BaeI ACNNNNGTAYC 1 cut(s) 724
BalI TGGCCA 1 cut(s) 311
BanII GRGCYC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 120
BccI CCATC 7 cut(s) 110, 134, 238, 394, 468, 640, 649
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 601
BfaI CTAG 3 cut(s) 533, 573, 600
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
Bme1390I CCNGG 1 cut(s) 180
Bme18I GGWCC 1 cut(s) 624
BmgT120I GGNCC 2 cut(s) 119, 624
BmrFI CCNGG 1 cut(s) 180
BmsI GCATC 2 cut(s) 95, 216
BpuEI CTTGAG 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 180
Bsa29I ATCGAT 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 328
BseCI ATCGAT 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 328
BseGI GGATG 1 cut(s) 126
BseRI GAGGAG 1 cut(s) 87
BseXI GCAGC 1 cut(s) 120
BseYI CCCAGC 1 cut(s) 121
BshFI GGCC 3 cut(s) 81, 120, 311
BshVI ATCGAT 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 246
BsiSI CCGG 1 cut(s) 179
BslFI GGGAC 1 cut(s) 710
BsmAI GTCTC 1 cut(s) 601
BsmFI GGGAC 1 cut(s) 710
BsnI GGCC 3 cut(s) 81, 120, 311
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 4 cut(s) 187, 258, 400, 700
BspACI CCGC 1 cut(s) 619
BspANI GGCC 3 cut(s) 81, 120, 311
BspDI ATCGAT 1 cut(s) 165
BspPI GGATC 2 cut(s) 266, 695
BssECI CCNNGG 1 cut(s) 328
BssMI GATC 4 cut(s) 187, 258, 400, 700
Bst4CI ACNGT 5 cut(s) 217, 299, 332, 394, 695
Bst6I CTCTTC 1 cut(s) 645
BstC8I GCNNGC 2 cut(s) 367, 490
BstDSI CCRYGG 1 cut(s) 328
BstF5I GGATG 1 cut(s) 126
BstKTI GATC 4 cut(s) 190, 261, 403, 703
BstMAI GTCTC 1 cut(s) 601
BstMBI GATC 4 cut(s) 187, 258, 400, 700
BstMWI GCNNNNNNNGC 3 cut(s) 117, 226, 366
BstNSI RCATGY 1 cut(s) 669
BstSCI CCNGG 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 120
Bsu15I ATCGAT 1 cut(s) 165
BsuRI GGCC 3 cut(s) 81, 120, 311
BsuTUI ATCGAT 1 cut(s) 165
BtgI CCRYGG 1 cut(s) 328
BtsCI GGATG 1 cut(s) 126
BtsI GCAGTG 1 cut(s) 643
BtsIMutI CAGTG 2 cut(s) 222, 643
Cac8I GCNNGC 2 cut(s) 367, 490
CaiI CAGNNNCTG 1 cut(s) 419
Cfr13I GGNCC 2 cut(s) 119, 624
ClaI ATCGAT 1 cut(s) 165
Csp6I GTAC 2 cut(s) 543, 696
CviAII CATG 6 cut(s) 65, 195, 239, 255, 307, 666
CviJI RGCY 9 cut(s) 81, 120, 125, 244, 311, 369, 453, 492, 569
CviKI_1 RGCY 9 cut(s) 81, 120, 125, 244, 311, 369, 453, 492, 569
CviQI GTAC 2 cut(s) 543, 696
DpnI GATC 4 cut(s) 189, 260, 402, 702
DpnII GATC 4 cut(s) 187, 258, 400, 700
EaeI YGGCCR 1 cut(s) 309
Eam1104I CTCTTC 1 cut(s) 645
EarI CTCTTC 1 cut(s) 645
Ecl136II GAGCTC 1 cut(s) 244
Eco147I AGGCCT 1 cut(s) 81
Eco24I GRGCYC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 624
Eco53kI GAGCTC 1 cut(s) 244
EcoICRI GAGCTC 1 cut(s) 244
EcoRI GAATTC 1 cut(s) 683
EcoT22I ATGCAT 1 cut(s) 719
EcoT38I GRGCYC 1 cut(s) 246
FaeI CATG 6 cut(s) 68, 198, 242, 258, 310, 669
FaqI GGGAC 1 cut(s) 710
FatI CATG 6 cut(s) 64, 194, 238, 254, 306, 665
Fnu4HI GCNGC 1 cut(s) 109
FokI GGATG 1 cut(s) 113
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 109
FspBI CTAG 3 cut(s) 533, 573, 600
GluI GCNGC 1 cut(s) 109
GsaI CCCAGC 1 cut(s) 125
HaeIII GGCC 3 cut(s) 81, 120, 311
HapII CCGG 1 cut(s) 179
Hin1II CATG 6 cut(s) 68, 198, 242, 258, 310, 669
HincII GTYRAC 1 cut(s) 641
HindII GTYRAC 1 cut(s) 641
HindIII AAGCTT 2 cut(s) 367, 490
HinfI GANTC 5 cut(s) 132, 416, 422, 613, 709
HpaII CCGG 1 cut(s) 179
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 1 cut(s) 641
Hpy188I TCNGA 5 cut(s) 9, 131, 284, 421, 607
Hpy188III TCNNGA 3 cut(s) 37, 554, 580
Hpy8I GTNNAC 1 cut(s) 641
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 5 cut(s) 217, 299, 332, 394, 695
HpyCH4V TGCA 6 cut(s) 64, 93, 108, 198, 306, 717
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 226, 366
Hsp92II CATG 6 cut(s) 68, 198, 242, 258, 310, 669
Kzo9I GATC 4 cut(s) 187, 258, 400, 700
LmnI GCTCC 1 cut(s) 39
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 2 cut(s) 95, 216
MaeI CTAG 3 cut(s) 533, 573, 600
MaeIII GTNAC 2 cut(s) 234, 250
MalI GATC 4 cut(s) 189, 260, 402, 702
MboI GATC 4 cut(s) 187, 258, 400, 700
MboII GAAGA 4 cut(s) 327, 330, 662, 688
MhlI GDGCHC 1 cut(s) 246
MlsI TGGCCA 1 cut(s) 311
MluCI AATT 3 cut(s) 318, 350, 683
MluNI TGGCCA 1 cut(s) 311
MlyI GAGTC 1 cut(s) 703
MnlI CCTC 2 cut(s) 65, 303
Mox20I TGGCCA 1 cut(s) 311
Mph1103I ATGCAT 1 cut(s) 719
MroXI GAANNNNTTC 2 cut(s) 612, 683
MscI TGGCCA 1 cut(s) 311
MseI TTAA 3 cut(s) 449, 524, 748
Msp20I TGGCCA 1 cut(s) 311
MspA1I CMGCKG 1 cut(s) 621
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 180
MwoI GCNNNNNNNGC 3 cut(s) 117, 226, 366
NciI CCSGG 1 cut(s) 180
NdeII GATC 4 cut(s) 187, 258, 400, 700
NlaIII CATG 6 cut(s) 68, 198, 242, 258, 310, 669
NmuCI GTSAC 1 cut(s) 234
NsiI ATGCAT 1 cut(s) 719
NspI RCATGY 1 cut(s) 669
PceI AGGCCT 1 cut(s) 81
PdmI GAANNNNTTC 2 cut(s) 612, 683
PfeI GAWTC 4 cut(s) 132, 416, 422, 613
PkrI GCNGC 1 cut(s) 110
PleI GAGTC 1 cut(s) 703
PpsI GAGTC 1 cut(s) 703
Psp124BI GAGCTC 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 121
PspPI GGNCC 2 cut(s) 119, 624
PstNI CAGNNNCTG 1 cut(s) 419
RsaI GTAC 2 cut(s) 544, 697
RsaNI GTAC 2 cut(s) 543, 696
SacI GAGCTC 1 cut(s) 246
SaqAI TTAA 3 cut(s) 449, 524, 748
SatI GCNGC 1 cut(s) 109
Sau3AI GATC 4 cut(s) 187, 258, 400, 700
Sau96I GGNCC 2 cut(s) 119, 624
SchI GAGTC 1 cut(s) 703
ScrFI CCNGG 1 cut(s) 180
SduI GDGCHC 1 cut(s) 246
SetI ASST 4 cut(s) 246, 371, 494, 742
SfaNI GCATC 2 cut(s) 95, 216
SinI GGWCC 1 cut(s) 624
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 3 cut(s) 318, 350, 683
SseBI AGGCCT 1 cut(s) 81
SsiI CCGC 1 cut(s) 619
SspMI CTAG 3 cut(s) 533, 573, 600
SstI GAGCTC 1 cut(s) 246
StuI AGGCCT 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 178
TaaI ACNGT 5 cut(s) 217, 299, 332, 394, 695
TaqI TCGA 2 cut(s) 142, 165
TasI AATT 3 cut(s) 318, 350, 683
TatI WGTACW 1 cut(s) 542
TfiI GAWTC 4 cut(s) 132, 416, 422, 613
Tru1I TTAA 3 cut(s) 449, 524, 748
Tru9I TTAA 3 cut(s) 449, 524, 748
TscAI CASTG 2 cut(s) 222, 650
TseFI GTSAC 1 cut(s) 234
TseI GCWGC 1 cut(s) 108
Tsp45I GTSAC 1 cut(s) 234
TspDTI ATGAA 1 cut(s) 183
TspRI CASTG 2 cut(s) 222, 650
VpaK11BI GGWCC 1 cut(s) 624
XapI RAATTY 3 cut(s) 318, 350, 683
XceI RCATGY 1 cut(s) 669
XmnI GAANNNNTTC 2 cut(s) 612, 683
XspI CTAG 3 cut(s) 533, 573, 600
Zsp2I ATGCAT 1 cut(s) 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.