RLG00000029607

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
41017400 .. 41018747
1348 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029607

Sequence Viewer

Length: 720 bp
ATGAAATGTCGGAAAAATGGCCCAGCTATCAGATTCCCTTTTAGCCTCAAAGGTAGCCACCCAGATAATTGTGGGTATCCTGGGTTTCTTGTATCCTGTAATGACAAGAATGAAACCATTCTTGAGCTGCCAATCCCAGTTAAATTCCCAATCAAAACCATAGATTATAAGAATCAGTCAATCCAGCTCTATGACCCAGAAAATTGCTTACTGGTGAAGCTCTTCAAAGTCCACTACATGTCAATCTCTCCCTTCTACTACCCAGAAAACCAATTGACGGATATTACCTTATTCAATTGTTCTTCAGCTACTGAAACGGAATCGACAGACAAAATAGATCCAGTCCCGTGCTTGAATGGCCCTGGCTACCTAATTTATTGGGCTTATTCCAGGTATAACATTGGGGACTTCCCCTTTGTGTCTTGTACAAAGATGTATAATCATTCATCAGTTCCATACAGGTGGCATGATCCTCAAAATCTATATTTGAACTGGTCGGAACCAAATTGTGGACTATGCGAAGCACACGGCGGTAAATGTGGATTGAAGAACAATGGCACCAAAAGTACCGAAATTGAATGCGTTAATAGGAAAGAAGATATTAAGAGGATTACAAATCAATTCAAGGTCAAATTAGGCCAAGGAGCCTATGGGACTGTTTTTAAGGGAAAACTTTCTGCCGAATGTTTTGTTGCGGTGAAAGTCCTCAATAGTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

240

Amino Acids

27.12

Weight (kDa)

8.51

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 3 - 65 9.3e-17 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
AccB1I GGYRCC 1 cut(s) 557
AccB7I CCANNNNNTGG 1 cut(s) 509
AciI CCGC 2 cut(s) 531, 695
AclWI GGATC 2 cut(s) 332, 464
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 288
AfaI GTAC 2 cut(s) 427, 568
AfiI CCNNNNNNNGG 2 cut(s) 277, 509
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 7 cut(s) 226, 295, 355, 490, 547, 578, 625
AjnI CCWGG 3 cut(s) 79, 361, 389
AluBI AGCT 5 cut(s) 26, 127, 187, 220, 308
AluI AGCT 5 cut(s) 26, 127, 187, 220, 308
AlwI GGATC 2 cut(s) 332, 464
AlwNI CAGNNNCTG 1 cut(s) 311
AoxI GGCC 3 cut(s) 19, 358, 637
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 143
ArsI GACNNNNNNTTYG 2 cut(s) 398, 430
Asp700I GAANNNNTTC 3 cut(s) 117, 221, 673
AspS9I GGNCC 2 cut(s) 20, 359
AsuHPI GGTGA 2 cut(s) 226, 709
BanI GGYRCC 1 cut(s) 557
BbvI GCAGC 1 cut(s) 114
BceAI ACGGC 1 cut(s) 544
BciT130I CCWGG 3 cut(s) 81, 363, 391
BciVI GTATCC 2 cut(s) 87, 103
BfuI GTATCC 2 cut(s) 87, 103
BisI GCNGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 129
Bme1390I CCNGG 3 cut(s) 81, 363, 391
BmgT120I GGNCC 2 cut(s) 20, 359
BmiI GGNNCC 3 cut(s) 501, 559, 646
BmrFI CCNGG 3 cut(s) 81, 363, 391
BmrI ACTGGG 1 cut(s) 131
BmuI ACTGGG 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 143
BsaJI CCNNGG 3 cut(s) 80, 361, 640
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 509
Bse1I ACTGG 4 cut(s) 137, 216, 341, 497
BseBI CCWGG 3 cut(s) 81, 363, 391
BseDI CCNNGG 3 cut(s) 80, 361, 640
BseLI CCNNNNNNNGG 2 cut(s) 277, 509
BseNI ACTGG 4 cut(s) 137, 216, 341, 497
BseXI GCAGC 1 cut(s) 114
BseYI CCCAGC 1 cut(s) 22
BshFI GGCC 3 cut(s) 21, 360, 639
BshNI GGYRCC 1 cut(s) 557
BslFI GGGAC 3 cut(s) 329, 419, 667
BslI CCNNNNNNNGG 2 cut(s) 277, 509
BsmFI GGGAC 3 cut(s) 329, 419, 667
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 3 cut(s) 21, 360, 639
Bsp1407I TGTACA 1 cut(s) 425
Bsp143I GATC 2 cut(s) 337, 469
BspACI CCGC 2 cut(s) 531, 695
BspANI GGCC 3 cut(s) 21, 360, 639
BspLI GGNNCC 3 cut(s) 501, 559, 646
BspPI GGATC 2 cut(s) 332, 464
BspQI GCTCTTC 1 cut(s) 227
BspT107I GGYRCC 1 cut(s) 557
BsrGI TGTACA 1 cut(s) 425
BsrI ACTGG 4 cut(s) 137, 216, 341, 497
BssECI CCNNGG 3 cut(s) 80, 361, 640
BssMI GATC 2 cut(s) 337, 469
BssT1I CCWWGG 1 cut(s) 640
Bst2UI CCWGG 3 cut(s) 81, 363, 391
Bst4CI ACNGT 1 cut(s) 658
Bst6I CTCTTC 1 cut(s) 227
BstAUI TGTACA 1 cut(s) 425
BstKTI GATC 2 cut(s) 340, 472
BstMBI GATC 2 cut(s) 337, 469
BstMWI GCNNNNNNNGC 1 cut(s) 357
BstNI CCWGG 3 cut(s) 81, 363, 391
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 3 cut(s) 79, 361, 389
BstV1I GCAGC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 337
BstXI CCANNNNNNTGG 1 cut(s) 462
BstYI RGATCY 1 cut(s) 337
BsuI GTATCC 2 cut(s) 87, 103
BsuRI GGCC 3 cut(s) 21, 360, 639
CaiI CAGNNNCTG 1 cut(s) 311
Cfr13I GGNCC 2 cut(s) 20, 359
Csp6I GTAC 2 cut(s) 426, 567
CviAII CATG 2 cut(s) 238, 467
CviQI GTAC 2 cut(s) 426, 567
DpnI GATC 2 cut(s) 339, 471
DpnII GATC 2 cut(s) 337, 469
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 640
Eco57I CTGAAG 1 cut(s) 288
EcoRII CCWGG 3 cut(s) 79, 361, 389
EcoT14I CCWWGG 1 cut(s) 640
ErhI CCWWGG 1 cut(s) 640
FaeI CATG 2 cut(s) 241, 470
FaqI GGGAC 3 cut(s) 329, 419, 667
FatI CATG 2 cut(s) 237, 466
Fnu4HI GCNGC 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 128
GluI GCNGC 1 cut(s) 128
GsaI CCCAGC 1 cut(s) 26
HaeIII GGCC 3 cut(s) 21, 360, 639
Hin1II CATG 2 cut(s) 241, 470
HinfI GANTC 3 cut(s) 33, 172, 320
HphI GGTGA 2 cut(s) 226, 709
Hpy166II GTNNAC 2 cut(s) 232, 512
Hpy188I TCNGA 3 cut(s) 12, 32, 499
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 2 cut(s) 232, 512
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 1 cut(s) 658
HpyF10VI GCNNNNNNNGC 1 cut(s) 357
Hsp92II CATG 2 cut(s) 241, 470
Kzo9I GATC 2 cut(s) 337, 469
LguI GCTCTTC 1 cut(s) 227
LmnI GCTCC 1 cut(s) 644
Lsp1109I GCAGC 1 cut(s) 114
MalI GATC 2 cut(s) 339, 471
MboI GATC 2 cut(s) 337, 469
MboII GAAGA 4 cut(s) 214, 294, 559, 608
MfeI CAATTG 2 cut(s) 272, 295
MflI RGATCY 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 477
MnlI CCTC 4 cut(s) 56, 483, 600, 716
MroXI GAANNNNTTC 3 cut(s) 117, 221, 673
MseI TTAA 4 cut(s) 141, 585, 603, 663
MslI CAYNNNNRTG 1 cut(s) 460
MspR9I CCNGG 3 cut(s) 81, 363, 391
MunI CAATTG 2 cut(s) 272, 295
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 3 cut(s) 81, 363, 391
MwoI GCNNNNNNNGC 1 cut(s) 357
NdeII GATC 2 cut(s) 337, 469
NlaIII CATG 2 cut(s) 241, 470
NlaIV GGNNCC 3 cut(s) 501, 559, 646
NspI RCATGY 1 cut(s) 241
PciI ACATGT 1 cut(s) 237
PciSI GCTCTTC 1 cut(s) 227
PctI GAATGC 1 cut(s) 584
PdmI GAANNNNTTC 3 cut(s) 117, 221, 673
PfeI GAWTC 3 cut(s) 33, 172, 320
PflMI CCANNNNNTGG 1 cut(s) 509
PkrI GCNGC 1 cut(s) 129
PscI ACATGT 1 cut(s) 237
PsiI TTATAA 1 cut(s) 168
Psp6I CCWGG 3 cut(s) 79, 361, 389
PspFI CCCAGC 1 cut(s) 22
PspGI CCWGG 3 cut(s) 79, 361, 389
PspN4I GGNNCC 3 cut(s) 501, 559, 646
PspPI GGNCC 2 cut(s) 20, 359
PstNI CAGNNNCTG 1 cut(s) 311
PsuI RGATCY 1 cut(s) 337
RsaI GTAC 2 cut(s) 427, 568
RsaNI GTAC 2 cut(s) 426, 567
RseI CAYNNNNRTG 1 cut(s) 460
SapI GCTCTTC 1 cut(s) 227
SaqAI TTAA 4 cut(s) 141, 585, 603, 663
SatI GCNGC 1 cut(s) 128
Sau3AI GATC 2 cut(s) 337, 469
Sau96I GGNCC 2 cut(s) 20, 359
ScrFI CCNGG 3 cut(s) 81, 363, 391
SmiMI CAYNNNNRTG 1 cut(s) 460
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
SsiI CCGC 2 cut(s) 531, 695
StyD4I CCNGG 3 cut(s) 79, 361, 389
StyI CCWWGG 1 cut(s) 640
TaaI ACNGT 1 cut(s) 658
TaqI TCGA 1 cut(s) 323
TatI WGTACW 1 cut(s) 425
TfiI GAWTC 3 cut(s) 33, 172, 320
Tru1I TTAA 4 cut(s) 141, 585, 603, 663
Tru9I TTAA 4 cut(s) 141, 585, 603, 663
TseI GCWGC 1 cut(s) 127
TspDTI ATGAA 3 cut(s) 17, 126, 435
TspGWI ACGGA 2 cut(s) 293, 332
Van91I CCANNNNNTGG 1 cut(s) 509
XapI RAATTY 1 cut(s) 143
XceI RCATGY 1 cut(s) 241
XcmI CCANNNNNNNNNTGG 1 cut(s) 647
XmnI GAANNNNTTC 3 cut(s) 117, 221, 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.