Rh3DG275900

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000107
Physical Location & Seq
Reverse (-)
27945706 .. 27948064
2359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG275900.1

Sequence Viewer

Length: 1824 bp
ATGCTTCTCAATTTCCTATGGTGGTTGCTCATAGTAATAGAACTGGTACATGGTGGAGAAGACCTTGAAAATTGCATCGAAACGAGGTGTAAACACCATGGCCCAACTATCCGATTTCCCTTTCGAATTAAAGGTAGGCAGCCGAATCACTGTGGTTATGAAGGCTTTGACATATCATGCACCAATGACAAGCAGACTGTTCTGGAGGTCATGCCATTGTTGGCGAGCAAGTTCTTTGTCAAAAACATCAACTATGCATCTCAGGAAATTGAAATATATTACCAGATTGGTTGCCCTCCTCAACAGGTTTTTGACCTCATCAGCTTATTGTCTTCTTCCCCATTCAAATTTGTAGAGGGCGGACGGAACTATACATTATTCAGCTGTCCATCATCGAAAGAACTAGACGAATATCGACGATCTCAGGGTCCTTACTGTGTGGCGAAACTGGGGCCTTGCAACCATGGCAGCAATCCTATAGGCAACCAGTTTTACACTGTTCGTGATGATTATTGCAAGGTTGACAGTCTGCCCCTAGTGTCTTGTACTAAGGTGCATGACTACTACACATCATCATCAGTACCAGACATGTCCACAGGAAGCAGGCACAATGTTCTTAAGCTGCAATGGTCCAAGCCATCATGTCAACATTGCGAAGAGATGGGAAAGACATGTAGACTGAAGACTAGTGAGCAATTCACACCTATCCAGACTGAAACTACTGAATGTTTAGATGTGCCCAAAGGTCATCGTAGCCGTGCAACCCTGAAGATATTAGGTACTTTCTCATCTTCTGTTATTCTCATAGTCACAGGAGCTGTCATTTACTATATCTACAGCTCGAAGAAAACAGAAGATGAAAATCAGCTGAGAATTGAAAGATTTTTGGATGACTACAGGGCTCTCAAGCCAAGTAGATACTCCTTTGCTGACATTAAGAGGATAACAAAAAAATTTGAGGACAAGTTGGGCCAAGGGGCCTATGGAACAGTGTACAAAGGAAAGCTTTCTTCTGAATTATTTGTTGCTGTGAAAATCCTCAACAATTCAAATGAAAAGGGTGGAGATTTTATAAATGAGGTAGGAACAATGGGTCGAATCCACCATGTCAATGTGGTTCGCTTGGTTGGCTTTTGTGCCGATGGATACATACGAGCTCTCATTTATGAATTCTTACCAAATGGTTCATTGCAGAATTTCTTATCACCAGCAGATCGTAAGAACTCTTTCCTTGGTTGGGATAGGTTGCAAGATATTGCTTTAGGTGTAGCCAAGGGAATTGAATATCTTCATCAAGGGTGTGATAAAAGAATCCTCCATTTTGATATCAAACCCCATAATGTTTTGCTAGAGGAGGACTTCACCCCAAAAGTTTCTGATTTTGGTCTAGCCAAGTTATGTTCTAAGGATCAAAGCGCAATATCCATGACTACAGCCAGAGGGACCATGGGCTACATGGCGCCCGAAGTGTTCTCTAGGAACTTTGGTAACGTGTCCTATAAGTCAGATGTCTATAGTTTTGGAACATTGTTGCTGGAAATGGTTGGGGGTAGAAAAAATTTTAAAGTCACTGAGGACTCCACCAGCGAAGTCTACTTCCCAGAGTGGATCTATAACCTCTTAGAAGAAGGGAACGACCTACGAATCCATATTGAGGACGAAGGAGATGGTAAAATTGCTAGGAAGCTTGCAATCGTGGGTCTATGGTGCATCCAATGGCACCCAGTAGATCGTCCGCCCATGAAACTCGTAGTTCAAATGTTGGAAAGAGAAGGTGACAATCTAACCATGCCTCCTAATCCTTTTGCCTCTACTTCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

607

Amino Acids

68.83

Weight (kDa)

6.95

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 25 - 93 1.1e-16 Wall-associated receptor kinase galacturonan-binding
PK_Tyr_Ser-Thr PF07714 318 - 585 2.6e-44 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 320 - 584 5.2e-46 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1073
AccB1I GGYRCC 2 cut(s) 1459, 1719
AccI GTMKAC 2 cut(s) 676, 1593
AciI CCGC 2 cut(s) 360, 1736
AclWI GGATC 2 cut(s) 1416, 1616
AcsI RAATTY 5 cut(s) 347, 953, 1169, 1195, 1558
AcuI CTGAAG 2 cut(s) 701, 788
AcyI GRCGYC 1 cut(s) 1460
AfaI GTAC 5 cut(s) 48, 547, 582, 781, 995
AfiI CCNNNNNNNGG 2 cut(s) 1237, 1654
AflII CTTAAG 1 cut(s) 617
AflIII ACRYGT 3 cut(s) 588, 671, 1491
AgsI TTSAA 8 cut(s) 68, 272, 346, 878, 1050, 1283, 1757, 1818
AhlI ACTAGT 1 cut(s) 686
AluBI AGCT 9 cut(s) 324, 384, 622, 818, 840, 868, 1006, 1157, 1687
AluI AGCT 9 cut(s) 324, 384, 622, 818, 840, 868, 1006, 1157, 1687
Alw21I GWGCWC 1 cut(s) 1159
AlwI GGATC 2 cut(s) 1416, 1616
AlwNI CAGNNNCTG 1 cut(s) 818
AoxI GGCC 4 cut(s) 100, 452, 970, 978
ApeKI GCWGC 3 cut(s) 139, 468, 622
ApoI RAATTY 5 cut(s) 347, 953, 1169, 1195, 1558
Asp700I GAANNNNTTC 3 cut(s) 1006, 1226, 1287
AspLEI GCGC 2 cut(s) 1418, 1462
AspS9I GGNCC 7 cut(s) 101, 428, 452, 630, 970, 978, 1443
AsuHPI GGTGA 3 cut(s) 1197, 1354, 1787
AsuII TTCGAA 1 cut(s) 124
AvaII GGWCC 3 cut(s) 428, 630, 1443
BaeGI GKGCMC 1 cut(s) 741
BanI GGYRCC 2 cut(s) 1459, 1719
BanII GRGCYC 2 cut(s) 904, 1159
BbsI GAAGAC 3 cut(s) 66, 324, 689
Bbv12I GWGCWC 1 cut(s) 1159
BbvI GCAGC 3 cut(s) 151, 480, 609
BccI CCATC 5 cut(s) 397, 646, 655, 1136, 1661
BceAI ACGGC 1 cut(s) 741
BciVI GTATCC 1 cut(s) 1139
BcuI ACTAGT 1 cut(s) 686
BfaI CTAG 7 cut(s) 404, 536, 687, 1349, 1388, 1476, 1680
BfmI CTRYAG 5 cut(s) 477, 835, 895, 1431, 1513
BfoI RGCGCY 1 cut(s) 1463
BfrI CTTAAG 1 cut(s) 617
BfuI GTATCC 1 cut(s) 1139
BisI GCNGC 3 cut(s) 140, 469, 623
BlsI GCNGC 3 cut(s) 141, 470, 624
Bme18I GGWCC 3 cut(s) 428, 630, 1443
BmgT120I GGNCC 7 cut(s) 101, 428, 452, 630, 970, 978, 1443
BmiI GGNNCC 6 cut(s) 429, 453, 979, 1444, 1461, 1721
BmrI ACTGGG 2 cut(s) 458, 1718
BmsI GCATC 3 cut(s) 84, 266, 1719
BmuI ACTGGG 2 cut(s) 458, 1718
BpiI GAAGAC 3 cut(s) 66, 324, 689
BpmI CTGGAG 1 cut(s) 224
Bpu14I TTCGAA 1 cut(s) 124
BpuEI CTTGAG 1 cut(s) 890
BsaBI GATNNNNATC 1 cut(s) 861
BsaHI GRCGYC 1 cut(s) 1460
BsaJI CCNNGG 6 cut(s) 97, 463, 973, 1231, 1272, 1446
BsaXI ACNNNNNCTCC 2 cut(s) 1777, 1807
Bsc4I CCNNNNNNNGG 2 cut(s) 1237, 1654
Bse1I ACTGG 4 cut(s) 48, 453, 487, 1724
Bse3DI GCAATG 3 cut(s) 632, 649, 1187
Bse8I GATNNNNATC 1 cut(s) 861
BseDI CCNNGG 6 cut(s) 97, 463, 973, 1231, 1272, 1446
BseGI GGATG 2 cut(s) 895, 1710
BseJI GATNNNNATC 1 cut(s) 861
BseLI CCNNNNNNNGG 2 cut(s) 1237, 1654
BseMI GCAATG 3 cut(s) 632, 649, 1187
BseMII CTCAG 4 cut(s) 275, 437, 860, 1563
BseNI ACTGG 4 cut(s) 48, 453, 487, 1724
BseRI GAGGAG 2 cut(s) 288, 1367
BseSI GKGCMC 1 cut(s) 741
BseXI GCAGC 3 cut(s) 151, 480, 609
BshFI GGCC 4 cut(s) 102, 454, 972, 980
BshNI GGYRCC 2 cut(s) 1459, 1719
BsiHKAI GWGCWC 1 cut(s) 1159
BslFI GGGAC 1 cut(s) 1456
BslI CCNNNNNNNGG 2 cut(s) 1237, 1654
BsmFI GGGAC 1 cut(s) 1456
BsnI GGCC 4 cut(s) 102, 454, 972, 980
Bsp119I TTCGAA 1 cut(s) 124
Bsp1286I GDGCHC 3 cut(s) 741, 904, 1159
Bsp1407I TGTACA 1 cut(s) 993
Bsp143I GATC 5 cut(s) 419, 1213, 1408, 1608, 1729
Bsp19I CCATGG 3 cut(s) 97, 463, 1446
BspACI CCGC 2 cut(s) 360, 1736
BspANI GGCC 4 cut(s) 102, 454, 972, 980
BspCNI CTCAG 4 cut(s) 274, 436, 861, 1564
BspLI GGNNCC 6 cut(s) 429, 453, 979, 1444, 1461, 1721
BspPI GGATC 2 cut(s) 1416, 1616
BspT104I TTCGAA 1 cut(s) 124
BspT107I GGYRCC 2 cut(s) 1459, 1719
BspTI CTTAAG 1 cut(s) 617
BsrDI GCAATG 3 cut(s) 632, 649, 1187
BsrGI TGTACA 1 cut(s) 993
BsrI ACTGG 4 cut(s) 48, 453, 487, 1724
BssECI CCNNGG 6 cut(s) 97, 463, 973, 1231, 1272, 1446
BssMI GATC 5 cut(s) 419, 1213, 1408, 1608, 1729
BssNI GRCGYC 1 cut(s) 1460
BssT1I CCWWGG 6 cut(s) 97, 463, 973, 1231, 1272, 1446
Bst4CI ACNGT 6 cut(s) 152, 199, 437, 499, 527, 991
Bst6I CTCTTC 1 cut(s) 651
BstACI GRCGYC 1 cut(s) 1460
BstAFI CTTAAG 1 cut(s) 617
BstAUI TGTACA 1 cut(s) 993
BstBI TTCGAA 1 cut(s) 124
BstC8I GCNNGC 3 cut(s) 226, 605, 1689
BstDEI CTNAG 7 cut(s) 261, 423, 549, 869, 1404, 1572, 1621
BstDSI CCRYGG 3 cut(s) 97, 463, 1446
BstF5I GGATG 2 cut(s) 895, 1710
BstH2I RGCGCY 1 cut(s) 1463
BstHHI GCGC 2 cut(s) 1418, 1462
BstKTI GATC 5 cut(s) 422, 1216, 1411, 1611, 1732
BstMBI GATC 5 cut(s) 419, 1213, 1408, 1608, 1729
BstMWI GCNNNNNNNGC 2 cut(s) 465, 1128
BstNSI RCATGY 2 cut(s) 592, 675
BstSFI CTRYAG 5 cut(s) 477, 835, 895, 1431, 1513
BstSLI GKGCMC 1 cut(s) 741
BstV1I GCAGC 3 cut(s) 151, 480, 609
BstV2I GAAGAC 3 cut(s) 66, 324, 689
BstX2I RGATCY 1 cut(s) 1608
BstYI RGATCY 1 cut(s) 1608
BsuI GTATCC 1 cut(s) 1139
BsuRI GGCC 4 cut(s) 102, 454, 972, 980
BtgI CCRYGG 3 cut(s) 97, 463, 1446
BtsCI GGATG 2 cut(s) 895, 1710
BtsIMutI CAGTG 4 cut(s) 148, 495, 996, 1569
Cac8I GCNNGC 3 cut(s) 226, 605, 1689
CaiI CAGNNNCTG 1 cut(s) 818
CfoI GCGC 2 cut(s) 1418, 1462
Cfr13I GGNCC 7 cut(s) 101, 428, 452, 630, 970, 978, 1443
Csp6I GTAC 5 cut(s) 47, 546, 581, 780, 994
CviQI GTAC 5 cut(s) 47, 546, 581, 780, 994
DdeI CTNAG 7 cut(s) 261, 423, 549, 869, 1404, 1572, 1621
DinI GGCGCC 1 cut(s) 1461
DpnI GATC 5 cut(s) 421, 1215, 1410, 1610, 1731
DpnII GATC 5 cut(s) 419, 1213, 1408, 1608, 1729
DraI TTTAAA 1 cut(s) 1564
Eam1104I CTCTTC 1 cut(s) 651
EarI CTCTTC 1 cut(s) 651
EciI GGCGGA 2 cut(s) 375, 1725
Ecl136II GAGCTC 1 cut(s) 1157
Eco130I CCWWGG 6 cut(s) 97, 463, 973, 1231, 1272, 1446
Eco24I GRGCYC 2 cut(s) 904, 1159
Eco32I GATATC 1 cut(s) 1327
Eco47I GGWCC 3 cut(s) 428, 630, 1443
Eco53kI GAGCTC 1 cut(s) 1157
Eco57I CTGAAG 2 cut(s) 701, 788
EcoICRI GAGCTC 1 cut(s) 1157
EcoO109I RGGNCCY 3 cut(s) 428, 452, 978
EcoRI GAATTC 1 cut(s) 1169
EcoRV GATATC 1 cut(s) 1327
EcoT14I CCWWGG 6 cut(s) 97, 463, 973, 1231, 1272, 1446
EcoT22I ATGCAT 1 cut(s) 259
EcoT38I GRGCYC 2 cut(s) 904, 1159
EgeI GGCGCC 1 cut(s) 1461
EheI GGCGCC 1 cut(s) 1461
ErhI CCWWGG 6 cut(s) 97, 463, 973, 1231, 1272, 1446
FalI AAGNNNNNCTT 2 cut(s) 990, 1022
FaqI GGGAC 1 cut(s) 1456
FblI GTMKAC 2 cut(s) 676, 1593
Fnu4HI GCNGC 3 cut(s) 140, 469, 623
FokI GGATG 2 cut(s) 902, 1697
FriOI GRGCYC 2 cut(s) 904, 1159
Fsp4HI GCNGC 3 cut(s) 140, 469, 623
FspBI CTAG 7 cut(s) 404, 536, 687, 1349, 1388, 1476, 1680
GlaI GCGC 2 cut(s) 1417, 1461
GluI GCNGC 3 cut(s) 140, 469, 623
GsuI CTGGAG 1 cut(s) 224
HaeII RGCGCY 1 cut(s) 1463
HaeIII GGCC 4 cut(s) 102, 454, 972, 980
HhaI GCGC 2 cut(s) 1418, 1462
Hin1I GRCGYC 1 cut(s) 1460
Hin6I GCGC 2 cut(s) 1416, 1460
HinP1I GCGC 2 cut(s) 1416, 1460
HincII GTYRAC 2 cut(s) 523, 647
HindII GTYRAC 2 cut(s) 523, 647
HindIII AAGCTT 2 cut(s) 1004, 1685
HinfI GANTC 5 cut(s) 145, 1098, 1311, 1577, 1644
HphI GGTGA 3 cut(s) 1197, 1354, 1787
Hpy166II GTNNAC 7 cut(s) 92, 523, 594, 647, 677, 994, 1594
Hpy188I TCNGA 4 cut(s) 113, 1015, 1378, 1507
Hpy188III TCNNGA 4 cut(s) 203, 263, 503, 709
Hpy8I GTNNAC 7 cut(s) 92, 523, 594, 647, 677, 994, 1594
Hpy99I CGWCG 1 cut(s) 420
HpyAV CCTTC 4 cut(s) 155, 1622, 1655, 1766
HpyCH4III ACNGT 6 cut(s) 152, 199, 437, 499, 527, 991
HpyCH4IV ACGT 1 cut(s) 1491
HpyF10VI GCNNNNNNNGC 2 cut(s) 465, 1128
HpyF3I CTNAG 7 cut(s) 261, 423, 549, 869, 1404, 1572, 1621
HpySE526I ACGT 1 cut(s) 1491
Hsp92I GRCGYC 1 cut(s) 1460
HspAI GCGC 2 cut(s) 1416, 1460
KasI GGCGCC 1 cut(s) 1459
Kzo9I GATC 5 cut(s) 419, 1213, 1408, 1608, 1729
LmnI GCTCC 1 cut(s) 815
Lsp1109I GCAGC 3 cut(s) 151, 480, 609
LweI GCATC 3 cut(s) 84, 266, 1719
MaeI CTAG 7 cut(s) 404, 536, 687, 1349, 1388, 1476, 1680
MaeII ACGT 1 cut(s) 1491
MaeIII GTNAC 4 cut(s) 808, 1487, 1567, 1775
MalI GATC 5 cut(s) 421, 1215, 1410, 1610, 1731
MboI GATC 5 cut(s) 419, 1213, 1408, 1608, 1729
MflI RGATCY 1 cut(s) 1608
MhlI GDGCHC 3 cut(s) 741, 904, 1159
Mly113I GGCGCC 1 cut(s) 1460
MlyI GAGTC 1 cut(s) 1571
MmeI TCCRAC 1 cut(s) 1743
Mph1103I ATGCAT 1 cut(s) 259
MroXI GAANNNNTTC 3 cut(s) 1006, 1226, 1287
MseI TTAA 4 cut(s) 129, 618, 936, 1563
MslI CAYNNNNRTG 1 cut(s) 1110
MspA1I CMGCKG 2 cut(s) 384, 868
MspCI CTTAAG 1 cut(s) 617
MwoI GCNNNNNNNGC 2 cut(s) 465, 1128
NarI GGCGCC 1 cut(s) 1460
NcoI CCATGG 3 cut(s) 97, 463, 1446
NdeII GATC 5 cut(s) 419, 1213, 1408, 1608, 1729
NlaIV GGNNCC 6 cut(s) 429, 453, 979, 1444, 1461, 1721
NmuCI GTSAC 3 cut(s) 808, 1567, 1775
NsiI ATGCAT 1 cut(s) 259
NspI RCATGY 2 cut(s) 592, 675
NspV TTCGAA 1 cut(s) 124
PciI ACATGT 2 cut(s) 588, 671
PdmI GAANNNNTTC 3 cut(s) 1006, 1226, 1287
PfeI GAWTC 4 cut(s) 145, 1098, 1311, 1644
PkrI GCNGC 3 cut(s) 141, 470, 624
PleI GAGTC 1 cut(s) 1571
PluTI GGCGCC 1 cut(s) 1463
PpsI GAGTC 1 cut(s) 1571
PpuMI RGGWCCY 1 cut(s) 428
PscI ACATGT 2 cut(s) 588, 671
PsiI TTATAA 1 cut(s) 1073
Psp124BI GAGCTC 1 cut(s) 1159
Psp5II RGGWCCY 1 cut(s) 428
PspN4I GGNNCC 6 cut(s) 429, 453, 979, 1444, 1461, 1721
PspPI GGNCC 7 cut(s) 101, 428, 452, 630, 970, 978, 1443
PspPPI RGGWCCY 1 cut(s) 428
PstNI CAGNNNCTG 1 cut(s) 818
PsuI RGATCY 1 cut(s) 1608
PvuII CAGCTG 2 cut(s) 384, 868
RsaI GTAC 5 cut(s) 48, 547, 582, 781, 995
RsaNI GTAC 5 cut(s) 47, 546, 581, 780, 994
RseI CAYNNNNRTG 1 cut(s) 1110
SacI GAGCTC 1 cut(s) 1159
SaqAI TTAA 4 cut(s) 129, 618, 936, 1563
SatI GCNGC 3 cut(s) 140, 469, 623
Sau3AI GATC 5 cut(s) 419, 1213, 1408, 1608, 1729
Sau96I GGNCC 7 cut(s) 101, 428, 452, 630, 970, 978, 1443
SchI GAGTC 1 cut(s) 1571
SduI GDGCHC 3 cut(s) 741, 904, 1159
SfaNI GCATC 3 cut(s) 84, 266, 1719
SfcI CTRYAG 5 cut(s) 477, 835, 895, 1431, 1513
SfoI GGCGCC 1 cut(s) 1461
SfuI TTCGAA 1 cut(s) 124
SinI GGWCC 3 cut(s) 428, 630, 1443
SmiMI CAYNNNNRTG 1 cut(s) 1110
SmlI CTYRAG 2 cut(s) 617, 905
SmoI CTYRAG 2 cut(s) 617, 905
SpeI ACTAGT 1 cut(s) 686
SsiI CCGC 2 cut(s) 360, 1736
SspDI GGCGCC 1 cut(s) 1459
SspMI CTAG 7 cut(s) 404, 536, 687, 1349, 1388, 1476, 1680
SstI GAGCTC 1 cut(s) 1159
StyI CCWWGG 6 cut(s) 97, 463, 973, 1231, 1272, 1446
TaaI ACNGT 6 cut(s) 152, 199, 437, 499, 527, 991
TaiI ACGT 1 cut(s) 1494
TaqI TCGA 6 cut(s) 78, 124, 395, 415, 842, 1096
TatI WGTACW 2 cut(s) 545, 993
TfiI GAWTC 4 cut(s) 145, 1098, 1311, 1644
Tru1I TTAA 4 cut(s) 129, 618, 936, 1563
Tru9I TTAA 4 cut(s) 129, 618, 936, 1563
TscAI CASTG 4 cut(s) 155, 502, 996, 1576
TseFI GTSAC 3 cut(s) 808, 1567, 1775
TseI GCWGC 3 cut(s) 139, 468, 622
Tsp45I GTSAC 3 cut(s) 808, 1567, 1775
TspDTI ATGAA 7 cut(s) 174, 873, 1068, 1176, 1182, 1280, 1757
TspGWI ACGGA 1 cut(s) 379
TspRI CASTG 4 cut(s) 155, 502, 996, 1576
Vha464I CTTAAG 1 cut(s) 617
VpaK11BI GGWCC 3 cut(s) 428, 630, 1443
XapI RAATTY 5 cut(s) 347, 953, 1169, 1195, 1558
XceI RCATGY 2 cut(s) 592, 675
XcmI CCANNNNNNNNNTGG 3 cut(s) 980, 1444, 1453
XmiI GTMKAC 2 cut(s) 676, 1593
XmnI GAANNNNTTC 3 cut(s) 1006, 1226, 1287
XspI CTAG 7 cut(s) 404, 536, 687, 1349, 1388, 1476, 1680
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.