Rh1AG132100

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000107
Physical Location & Seq
Forward (+)
24975470 .. 25012940
37471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG132100.1

Sequence Viewer

Length: 327 bp
ATGACTACCGCCAGGGGAACGATGGGGTACATTGCACCTGAAGTGTTCTCCAGGAACTTTGGAAATGTGTCCTATAAGTCAGATGTCTATAGCTATGGAATGATACTGCTTGAGATTGTAAGAAGGAGAGAGAACATTGGTTCAACCACAGAGAACACCAATGAAGTTTACTACCCAGAATGGATCTATAATCTTCTGGAAGAAAAAGATGACCTACCTATCAATGTTGGGAAAGAAAAAGATGCTAAAATTGCAAAGAGACTTGCGATTGTAGGTCTCTGGTGCATTCAACGGCATCCTGCAGATGGTCGTTCTATGCAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase

Protein Analysis

108

Amino Acids

12.36

Weight (kDa)

6.58

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 55 3e-07 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 9
AclWI GGATC 1 cut(s) 191
AcuI CTGAAG 1 cut(s) 60
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 305
AgsI TTSAA 2 cut(s) 144, 290
AjnI CCWGG 2 cut(s) 11, 50
AluBI AGCT 1 cut(s) 93
AluI AGCT 1 cut(s) 93
Alw26I GTCTC 2 cut(s) 253, 281
AlwI GGATC 1 cut(s) 191
BccI CCATC 2 cut(s) 16, 299
BceAI ACGGC 1 cut(s) 308
BciT130I CCWGG 2 cut(s) 13, 52
BcoDI GTCTC 2 cut(s) 253, 281
BfmI CTRYAG 2 cut(s) 88, 300
Bme1390I CCNGG 2 cut(s) 13, 52
BmrFI CCNGG 2 cut(s) 13, 52
BmsI GCATC 2 cut(s) 232, 304
BpmI CTGGAG 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 131
BsaI GGTCTC 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 12
Bsc4I CCNNNNNNNGG 1 cut(s) 305
Bse3DI GCAATG 1 cut(s) 30
BseBI CCWGG 2 cut(s) 13, 52
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 295
BseLI CCNNNNNNNGG 1 cut(s) 305
BseMI GCAATG 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 305
BsmAI GTCTC 2 cut(s) 253, 281
BsmI GAATGC 1 cut(s) 285
Bso31I GGTCTC 1 cut(s) 281
Bsp143I GATC 1 cut(s) 183
BspACI CCGC 1 cut(s) 9
BspMAI CTGCAG 1 cut(s) 304
BspPI GGATC 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 1 cut(s) 183
Bst2UI CCWGG 2 cut(s) 13, 52
BstF5I GGATG 1 cut(s) 295
BstKTI GATC 1 cut(s) 186
BstMAI GTCTC 2 cut(s) 253, 281
BstMBI GATC 1 cut(s) 183
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 2 cut(s) 13, 52
BstSCI CCNGG 2 cut(s) 11, 50
BstSFI CTRYAG 2 cut(s) 88, 300
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
BtsCI GGATG 1 cut(s) 295
Csp6I GTAC 1 cut(s) 28
CviJI RGCY 1 cut(s) 93
CviKI_1 RGCY 1 cut(s) 93
CviQI GTAC 1 cut(s) 28
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 281
Eco57I CTGAAG 1 cut(s) 60
EcoRII CCWGG 2 cut(s) 11, 50
FaiI YATR 5 cut(s) 75, 90, 96, 189, 317
FokI GGATG 1 cut(s) 282
GsuI CTGGAG 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 117
HpyCH4V TGCA 5 cut(s) 35, 254, 285, 302, 319
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
Kzo9I GATC 1 cut(s) 183
LpnPI CCDG 8 cut(s) 25, 37, 51, 64, 182, 189, 265, 312
LweI GCATC 2 cut(s) 232, 304
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 2 cut(s) 185, 212
MflI RGATCY 1 cut(s) 183
MluCI AATT 1 cut(s) 249
MspR9I CCNGG 2 cut(s) 13, 52
Mva1269I GAATGC 1 cut(s) 285
MvaI CCWGG 2 cut(s) 13, 52
MwoI GCNNNNNNNGC 1 cut(s) 251
NdeII GATC 1 cut(s) 183
PctI GAATGC 1 cut(s) 285
PfoI TCCNGGA 1 cut(s) 50
Psp6I CCWGG 2 cut(s) 11, 50
PspGI CCWGG 2 cut(s) 11, 50
PstI CTGCAG 1 cut(s) 304
PsuI RGATCY 1 cut(s) 183
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
Sau3AI GATC 1 cut(s) 183
ScrFI CCNGG 2 cut(s) 13, 52
SetI ASST 5 cut(s) 40, 95, 216, 220, 277
SfaNI GCATC 2 cut(s) 232, 304
SfcI CTRYAG 2 cut(s) 88, 300
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 1 cut(s) 249
SsiI CCGC 1 cut(s) 9
StyD4I CCNGG 2 cut(s) 11, 50
TasI AATT 1 cut(s) 249
TspDTI ATGAA 1 cut(s) 177
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.