Rroxscaffold_4G00324900

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000107
Physical Location & Seq
Reverse (-)
56561244 .. 56562703
1460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00324900.1

Sequence Viewer

Length: 399 bp
ATGGCTTCACAGGACGTCATGTACAACTTGTCGGTTGAAGATCATGTTTCGCATGGCGGAGCAGGTGGCCTTGAAAATTGTGGAGAAACACGTTGTAAATTCAACAATCTAGCCATCAGATTCCCTTTTCGAGTTAAAGAAAGGCAGCCAATCCATTGCGGTTATGAAGGCTTTGATCTATCATGCACCAATGACAACCAGACTGTACTCGAGATGCCATCATCAGCTTTTAACAAGCTCTTGGTGCATTCGATTAACTATACATCTCAGCAAATTGAAATTTACGACCCTAATGGTTGTATGCAGACACAGCTTTTGAACATCAACTTATCTTCTTCAGATTCTTTTCCCTTCAGATCCATAAACAATGTAGTTGACTATATGACGCAGACGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

132

Amino Acids

14.87

Weight (kDa)

4.87

Isoelectric Point (pI)

57.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 27 - 96 4.1e-17 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 53
AatII GACGTC 1 cut(s) 18
Acc36I ACCTGC 1 cut(s) 53
AciI CCGC 2 cut(s) 57, 159
AclWI GGATC 1 cut(s) 351
AcsI RAATTY 2 cut(s) 98, 279
AcuI CTGAAG 2 cut(s) 321, 337
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 2 cut(s) 23, 207
AflIII ACRYGT 1 cut(s) 89
AgsI TTSAA 5 cut(s) 38, 74, 103, 278, 319
AluBI AGCT 3 cut(s) 227, 238, 313
AluI AGCT 3 cut(s) 227, 238, 313
AlwI GGATC 1 cut(s) 351
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 1 cut(s) 145
ApoI RAATTY 2 cut(s) 98, 279
ArsI GACNNNNNNTTYG 2 cut(s) 298, 330
AvaI CYCGRG 1 cut(s) 209
BbvI GCAGC 1 cut(s) 157
BccI CCATC 2 cut(s) 122, 226
BfaI CTAG 1 cut(s) 110
BfuAI ACCTGC 1 cut(s) 53
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
BmeT110I CYCGRG 1 cut(s) 209
BmsI GCATC 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 15
Bse3DI GCAATG 1 cut(s) 154
BseMI GCAATG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 281
BseXI GCAGC 1 cut(s) 157
BshFI GGCC 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 209
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 1 cut(s) 69
BsoBI CYCGRG 1 cut(s) 209
Bsp1407I TGTACA 1 cut(s) 21
Bsp143I GATC 3 cut(s) 40, 175, 356
BspACI CCGC 2 cut(s) 57, 159
BspANI GGCC 1 cut(s) 69
BspCNI CTCAG 1 cut(s) 280
BspMI ACCTGC 1 cut(s) 53
BspPI GGATC 1 cut(s) 351
BsrDI GCAATG 1 cut(s) 154
BsrGI TGTACA 1 cut(s) 21
BssMI GATC 3 cut(s) 40, 175, 356
BssNI GRCGYC 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 205
BstACI GRCGYC 1 cut(s) 15
BstAUI TGTACA 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 267
BstKTI GATC 3 cut(s) 43, 178, 359
BstMBI GATC 3 cut(s) 40, 175, 356
BstMWI GCNNNNNNNGC 2 cut(s) 244, 310
BstV1I GCAGC 1 cut(s) 157
BstX2I RGATCY 1 cut(s) 356
BstYI RGATCY 1 cut(s) 356
BsuRI GGCC 1 cut(s) 69
BveI ACCTGC 1 cut(s) 53
CseI GACGC 1 cut(s) 394
Csp6I GTAC 2 cut(s) 22, 206
CviAII CATG 4 cut(s) 19, 44, 53, 183
CviJI RGCY 8 cut(s) 5, 69, 113, 148, 171, 227, 238, 313
CviKI_1 RGCY 8 cut(s) 5, 69, 113, 148, 171, 227, 238, 313
CviQI GTAC 2 cut(s) 22, 206
DdeI CTNAG 1 cut(s) 267
DpnI GATC 3 cut(s) 42, 177, 358
DpnII GATC 3 cut(s) 40, 175, 356
EciI GGCGGA 1 cut(s) 72
Eco57I CTGAAG 2 cut(s) 321, 337
Eco88I CYCGRG 1 cut(s) 209
FaeI CATG 4 cut(s) 22, 47, 56, 186
FatI CATG 4 cut(s) 18, 43, 52, 182
Fnu4HI GCNGC 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 146
FspBI CTAG 1 cut(s) 110
GluI GCNGC 1 cut(s) 146
HaeIII GGCC 1 cut(s) 69
HgaI GACGC 1 cut(s) 394
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 4 cut(s) 22, 47, 56, 186
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 2 cut(s) 120, 341
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 3 cut(s) 119, 340, 356
Hpy188III TCNNGA 1 cut(s) 211
Hpy8I GTNNAC 1 cut(s) 376
HpyAV CCTTC 2 cut(s) 161, 361
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 2 cut(s) 15, 91
HpyCH4V TGCA 3 cut(s) 186, 247, 304
HpyF10VI GCNNNNNNNGC 2 cut(s) 244, 310
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 2 cut(s) 15, 91
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 4 cut(s) 22, 47, 56, 186
Kzo9I GATC 3 cut(s) 40, 175, 356
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 2 cut(s) 48, 212
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 1 cut(s) 204
MaeI CTAG 1 cut(s) 110
MaeII ACGT 2 cut(s) 15, 91
MalI GATC 3 cut(s) 42, 177, 358
MboI GATC 3 cut(s) 40, 175, 356
MboII GAAGA 3 cut(s) 50, 324, 327
MflI RGATCY 1 cut(s) 356
MluCI AATT 4 cut(s) 76, 98, 273, 279
MseI TTAA 3 cut(s) 135, 231, 255
Mva1269I GAATGC 1 cut(s) 247
MwoI GCNNNNNNNGC 2 cut(s) 244, 310
NdeII GATC 3 cut(s) 40, 175, 356
NlaIII CATG 4 cut(s) 22, 47, 56, 186
PaeR7I CTCGAG 1 cut(s) 209
PaqCI CACCTGC 1 cut(s) 53
PctI GAATGC 1 cut(s) 247
PfeI GAWTC 2 cut(s) 120, 341
PkrI GCNGC 1 cut(s) 147
PsuI RGATCY 1 cut(s) 356
RsaI GTAC 2 cut(s) 23, 207
RsaNI GTAC 2 cut(s) 22, 206
SaqAI TTAA 3 cut(s) 135, 231, 255
SatI GCNGC 1 cut(s) 146
Sau3AI GATC 3 cut(s) 40, 175, 356
SetI ASST 6 cut(s) 18, 67, 94, 229, 240, 315
SfaNI GCATC 1 cut(s) 204
Sfr274I CTCGAG 1 cut(s) 209
SlaI CTCGAG 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 4 cut(s) 76, 98, 273, 279
SsiI CCGC 2 cut(s) 57, 159
SspMI CTAG 1 cut(s) 110
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 2 cut(s) 18, 94
TaqI TCGA 3 cut(s) 130, 210, 251
TasI AATT 4 cut(s) 76, 98, 273, 279
TatI WGTACW 2 cut(s) 21, 205
TfiI GAWTC 2 cut(s) 120, 341
Tru1I TTAA 3 cut(s) 135, 231, 255
Tru9I TTAA 3 cut(s) 135, 231, 255
TseI GCWGC 1 cut(s) 145
TspDTI ATGAA 1 cut(s) 180
XapI RAATTY 2 cut(s) 98, 279
XhoI CTCGAG 1 cut(s) 209
XspI CTAG 1 cut(s) 110
ZraI GACGTC 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.