RchiOBHm_Chr1g0333311

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000107
Physical Location & Seq
Forward (+)
25299326 .. 25299933
608 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56212

Sequence Viewer

Length: 543 bp
ATGGAACTGTTTTTAAAGGAATTTGTCAATGAAGTGGGAGCAATGGGTCATATCCACCATGTCAACGTGGTTCGAATGGTTGGCTTTTGTGCTGATGGATACAGAAGAGCTCTTGTTTATGAGTACTTCCCCAATGGTTCATTACAAGATTTCATTTCCTCAGCAAACAATAAGAATGGTTTCCTTGGTTGGGATAAGTTGAAAGATATTTCTCTAGGAATAGCCAAAGGAATTGAATATCTCCACCAAGGATGTGATCAACGAATCCTCCATTTTGATATCAAACCTCATAATGTTTTGCTAGACCACAACTTCACTCCAAAAATTTCTGATTTTGGTTTGGCCAAGTTATGTTCCAAGGATCAAAGTATTGTGTCAATGACTACGGCTAGGGGCACCATGGGCTACATTGCACCTGAAGTTTTCTCCAGAAATTTTGGAAATGTGTCTTACAAGTCTGATGTCTATAGCTTCGGAATGTTGTTGCTGGAGATCGTTGGAGGTAGGAAGAATAAGTCAAATAAGACAAGATTGAGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase

Protein Analysis

180

Amino Acids

20.33

Weight (kDa)

8.94

Isoelectric Point (pI)

24.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 6 - 171 1.3e-37 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 6 - 168 5.8e-35 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 395
AclWI GGATC 1 cut(s) 369
AcoI YGGCCR 1 cut(s) 342
AcsI RAATTY 3 cut(s) 20, 324, 433
AcuI CTGAAG 1 cut(s) 438
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 2 cut(s) 202, 236
AluBI AGCT 2 cut(s) 110, 471
AluI AGCT 2 cut(s) 110, 471
Alw21I GWGCWC 1 cut(s) 112
AlwI GGATC 1 cut(s) 369
AoxI GGCC 1 cut(s) 342
ApoI RAATTY 3 cut(s) 20, 324, 433
Asp700I GAANNNNTTC 1 cut(s) 179
AsuII TTCGAA 1 cut(s) 73
BaeGI GKGCMC 1 cut(s) 398
BalI TGGCCA 1 cut(s) 344
BanI GGYRCC 1 cut(s) 395
BanII GRGCYC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 112
BbvCI CCTCAGC 1 cut(s) 160
BccI CCATC 1 cut(s) 89
BceAI ACGGC 1 cut(s) 402
BciVI GTATCC 1 cut(s) 92
BclI TGATCA 1 cut(s) 256
BfaI CTAG 3 cut(s) 215, 302, 390
BfmI CTRYAG 1 cut(s) 466
BfuI GTATCC 1 cut(s) 92
BmcAI AGTACT 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 397
BpmI CTGGAG 2 cut(s) 412, 509
Bpu10I CCTNAGC 1 cut(s) 160
Bpu14I TTCGAA 1 cut(s) 73
BsaJI CCNNGG 4 cut(s) 184, 247, 357, 399
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse3DI GCAATG 2 cut(s) 48, 408
BseDI CCNNGG 4 cut(s) 184, 247, 357, 399
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMI GCAATG 2 cut(s) 48, 408
BseMII CTCAG 1 cut(s) 174
BseSI GKGCMC 1 cut(s) 398
BshFI GGCC 1 cut(s) 344
BshNI GGYRCC 1 cut(s) 395
BsiHKAI GWGCWC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 190
BsnI GGCC 1 cut(s) 344
Bsp119I TTCGAA 1 cut(s) 73
Bsp1286I GDGCHC 2 cut(s) 112, 398
Bsp143I GATC 3 cut(s) 256, 361, 492
Bsp19I CCATGG 1 cut(s) 399
BspANI GGCC 1 cut(s) 344
BspCNI CTCAG 1 cut(s) 173
BspLI GGNNCC 1 cut(s) 397
BspPI GGATC 1 cut(s) 369
BspQI GCTCTTC 1 cut(s) 100
BspT104I TTCGAA 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 395
BsrDI GCAATG 2 cut(s) 48, 408
BssECI CCNNGG 4 cut(s) 184, 247, 357, 399
BssMI GATC 3 cut(s) 256, 361, 492
BssT1I CCWWGG 4 cut(s) 184, 247, 357, 399
Bst4CI ACNGT 1 cut(s) 9
Bst6I CTCTTC 1 cut(s) 100
BstBI TTCGAA 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 160
BstDSI CCRYGG 1 cut(s) 399
BstF5I GGATG 1 cut(s) 257
BstKTI GATC 3 cut(s) 259, 364, 495
BstMBI GATC 3 cut(s) 256, 361, 492
BstMWI GCNNNNNNNGC 1 cut(s) 402
BstSFI CTRYAG 1 cut(s) 466
BstSLI GKGCMC 1 cut(s) 398
BsuI GTATCC 1 cut(s) 92
BsuRI GGCC 1 cut(s) 344
BtgI CCRYGG 1 cut(s) 399
BtsCI GGATG 1 cut(s) 257
Csp6I GTAC 1 cut(s) 124
CviAII CATG 2 cut(s) 59, 400
CviJI RGCY 7 cut(s) 84, 110, 224, 344, 389, 405, 471
CviKI_1 RGCY 7 cut(s) 84, 110, 224, 344, 389, 405, 471
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 160
DpnI GATC 3 cut(s) 258, 363, 494
DpnII GATC 3 cut(s) 256, 361, 492
DraI TTTAAA 1 cut(s) 15
EaeI YGGCCR 1 cut(s) 342
Eam1104I CTCTTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 100
Ecl136II GAGCTC 1 cut(s) 110
Eco130I CCWWGG 4 cut(s) 184, 247, 357, 399
Eco24I GRGCYC 1 cut(s) 112
Eco32I GATATC 1 cut(s) 280
Eco53kI GAGCTC 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 438
EcoICRI GAGCTC 1 cut(s) 110
EcoRV GATATC 1 cut(s) 280
EcoT14I CCWWGG 4 cut(s) 184, 247, 357, 399
EcoT38I GRGCYC 1 cut(s) 112
ErhI CCWWGG 4 cut(s) 184, 247, 357, 399
FaeI CATG 2 cut(s) 62, 403
FaiI YATR 7 cut(s) 51, 60, 120, 291, 352, 401, 468
FatI CATG 2 cut(s) 58, 399
FbaI TGATCA 1 cut(s) 256
FokI GGATG 1 cut(s) 264
FriOI GRGCYC 1 cut(s) 112
FspBI CTAG 3 cut(s) 215, 302, 390
GsuI CTGGAG 2 cut(s) 412, 509
HaeIII GGCC 1 cut(s) 344
Hin1II CATG 2 cut(s) 62, 403
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 1 cut(s) 264
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 3 cut(s) 331, 460, 476
Hpy188III TCNNGA 1 cut(s) 429
Hpy8I GTNNAC 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 9
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 1 cut(s) 413
HpyF10VI GCNNNNNNNGC 1 cut(s) 402
HpyF3I CTNAG 1 cut(s) 160
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 2 cut(s) 62, 403
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 3 cut(s) 256, 361, 492
LguI GCTCTTC 1 cut(s) 100
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 3 cut(s) 429, 442, 473
MaeI CTAG 3 cut(s) 215, 302, 390
MaeII ACGT 1 cut(s) 66
MalI GATC 3 cut(s) 258, 363, 494
MboI GATC 3 cut(s) 256, 361, 492
MboII GAAGA 2 cut(s) 117, 520
MhlI GDGCHC 2 cut(s) 112, 398
MlsI TGGCCA 1 cut(s) 344
MluCI AATT 4 cut(s) 20, 231, 324, 433
MluNI TGGCCA 1 cut(s) 344
MmeI TCCRAC 1 cut(s) 478
MnlI CCTC 4 cut(s) 169, 278, 297, 494
Mox20I TGGCCA 1 cut(s) 344
MroXI GAANNNNTTC 1 cut(s) 179
MscI TGGCCA 1 cut(s) 344
MseI TTAA 1 cut(s) 14
Msp20I TGGCCA 1 cut(s) 344
MwoI GCNNNNNNNGC 1 cut(s) 402
NcoI CCATGG 1 cut(s) 399
NdeII GATC 3 cut(s) 256, 361, 492
NlaIII CATG 2 cut(s) 62, 403
NlaIV GGNNCC 1 cut(s) 397
NspV TTCGAA 1 cut(s) 73
PciSI GCTCTTC 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 1 cut(s) 264
Psp124BI GAGCTC 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 397
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SacI GAGCTC 1 cut(s) 112
SapI GCTCTTC 1 cut(s) 100
SaqAI TTAA 1 cut(s) 14
Sau3AI GATC 3 cut(s) 256, 361, 492
ScaI AGTACT 1 cut(s) 125
SduI GDGCHC 2 cut(s) 112, 398
SetI ASST 6 cut(s) 69, 112, 289, 418, 473, 505
SfcI CTRYAG 1 cut(s) 466
SfuI TTCGAA 1 cut(s) 73
Sse9I AATT 4 cut(s) 20, 231, 324, 433
SspMI CTAG 3 cut(s) 215, 302, 390
SstI GAGCTC 1 cut(s) 112
StyI CCWWGG 4 cut(s) 184, 247, 357, 399
TaaI ACNGT 1 cut(s) 9
TaiI ACGT 1 cut(s) 69
TaqI TCGA 1 cut(s) 73
TasI AATT 4 cut(s) 20, 231, 324, 433
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TspDTI ATGAA 3 cut(s) 45, 129, 142
XapI RAATTY 3 cut(s) 20, 324, 433
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 3 cut(s) 215, 302, 390
ZrmI AGTACT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.