Rh5CG351600

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000107
Physical Location & Seq
Reverse (-)
40638409 .. 40639029
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG351600.1

Sequence Viewer

Length: 621 bp
ATGAGTTTCTTCTTCTGGTTGCTCCTGATATTTGTAGATTTAGATGTTGTGCATGGTGGAGGAGTAGGTCGTGAAAATTGCACAGAAACAAGATGTAGCAGCGATGGCCCAGCTATCCGGTTCCCATTTCGACTGAAAGGTAGGCAACCGGTCCAATGTGGTTCCCCGGGCTTTGATCTTGCATGCACCAACGACAACCAGACACTGCTTCAGATGCCATCATCATCTAAGCTCTTTGTTACAGAGATTAACTATAAATCACAGACAATTGAAGCAGAACTTGCACCTGATTGCTTGGATGGAGACATTTTTGACCTCGGTTCTTCTTCTACCTTCAAATATGTAGGCAACGCAAGCTTGTTCAGTTGCCCACCATCAACTGTGAGAGATCAATATATTACAGCATATCCCTACAAGTACAATTCTCGTTGTCTGGCAAGATTGAGCCCATGCCATGGTAATCCAGGCAACCAAATTTTTGCTTTTAGGACAGGTTGTTGTTCTATTGATAACATTCCCCTGGTGTCTTGTACCAAGGTGCATGACTACAAAGATTCTCTTGCATACACAGATGACGATATATATTCACGCGTCTCTCTACTGGTCCATACCATCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

206

Amino Acids

22.85

Weight (kDa)

5.48

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 27 - 91 2.4e-18 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 455
AccII CGCG 1 cut(s) 591
AcsI RAATTY 1 cut(s) 474
AcuI CTGAAG 1 cut(s) 194
AfaI GTAC 2 cut(s) 419, 532
AfiI CCNNNNNNNGG 1 cut(s) 455
AflIII ACRYGT 1 cut(s) 589
AgeI ACCGGT 1 cut(s) 148
AgsI TTSAA 2 cut(s) 272, 337
AjnI CCWGG 2 cut(s) 463, 519
AluBI AGCT 3 cut(s) 113, 232, 357
AluI AGCT 3 cut(s) 113, 232, 357
Alw26I GTCTC 2 cut(s) 297, 598
AlwNI CAGNNNCTG 1 cut(s) 205
Ama87I CYCGRG 1 cut(s) 166
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 99
ApoI RAATTY 1 cut(s) 474
AsiGI ACCGGT 1 cut(s) 148
AspS9I GGNCC 3 cut(s) 107, 151, 604
AsuC2I CCSGG 2 cut(s) 167, 168
AvaI CYCGRG 1 cut(s) 166
AvaII GGWCC 2 cut(s) 151, 604
BanII GRGCYC 1 cut(s) 449
BbvI GCAGC 1 cut(s) 111
BccI CCATC 5 cut(s) 98, 226, 293, 382, 620
BciT130I CCWGG 2 cut(s) 465, 521
BcnI CCSGG 2 cut(s) 167, 168
BcoDI GTCTC 2 cut(s) 297, 598
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
Bme1390I CCNGG 4 cut(s) 167, 168, 465, 521
Bme18I GGWCC 2 cut(s) 151, 604
BmeT110I CYCGRG 1 cut(s) 166
BmgT120I GGNCC 3 cut(s) 107, 151, 604
BmiI GGNNCC 2 cut(s) 122, 163
BmrFI CCNGG 4 cut(s) 167, 168, 465, 521
BmsI GCATC 1 cut(s) 204
BpuMI CCSGG 2 cut(s) 167, 168
BsaJI CCNNGG 6 cut(s) 165, 166, 316, 454, 519, 534
BsaWI WCCGGW 2 cut(s) 117, 148
Bsc4I CCNNNNNNNGG 1 cut(s) 455
Bse118I RCCGGY 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 606
BseBI CCWGG 2 cut(s) 465, 521
BseDI CCNNGG 6 cut(s) 165, 166, 316, 454, 519, 534
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 455
BseNI ACTGG 1 cut(s) 606
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 111
BseYI CCCAGC 1 cut(s) 109
Bsh1236I CGCG 1 cut(s) 591
BshFI GGCC 1 cut(s) 108
BshTI ACCGGT 1 cut(s) 148
BsiHKCI CYCGRG 1 cut(s) 166
BsiSI CCGG 3 cut(s) 118, 149, 167
BslI CCNNNNNNNGG 1 cut(s) 455
BsmAI GTCTC 2 cut(s) 297, 598
BsmBI CGTCTC 1 cut(s) 598
BsnI GGCC 1 cut(s) 108
BsoBI CYCGRG 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 449
Bsp143I GATC 2 cut(s) 175, 388
Bsp19I CCATGG 1 cut(s) 454
BspANI GGCC 1 cut(s) 108
BspFNI CGCG 1 cut(s) 591
BspLI GGNNCC 2 cut(s) 122, 163
BsrFI RCCGGY 1 cut(s) 148
BsrI ACTGG 1 cut(s) 606
BssAI RCCGGY 1 cut(s) 148
BssECI CCNNGG 6 cut(s) 165, 166, 316, 454, 519, 534
BssMI GATC 2 cut(s) 175, 388
BssT1I CCWWGG 2 cut(s) 454, 534
Bst2UI CCWGG 2 cut(s) 465, 521
Bst4CI ACNGT 1 cut(s) 382
BstAPI GCANNNNNTGC 1 cut(s) 281
BstC8I GCNNGC 2 cut(s) 184, 355
BstDEI CTNAG 1 cut(s) 228
BstDSI CCRYGG 1 cut(s) 454
BstF5I GGATG 1 cut(s) 304
BstFNI CGCG 1 cut(s) 591
BstKTI GATC 2 cut(s) 178, 391
BstMAI GTCTC 2 cut(s) 297, 598
BstMBI GATC 2 cut(s) 175, 388
BstMWI GCNNNNNNNGC 4 cut(s) 105, 214, 281, 354
BstNI CCWGG 2 cut(s) 465, 521
BstNSI RCATGY 1 cut(s) 186
BstSCI CCNGG 4 cut(s) 165, 166, 463, 519
BstUI CGCG 1 cut(s) 591
BstV1I GCAGC 1 cut(s) 111
BsuRI GGCC 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 454
BtgZI GCGATG 1 cut(s) 117
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 203
Cac8I GCNNGC 2 cut(s) 184, 355
CaiI CAGNNNCTG 1 cut(s) 205
Cfr10I RCCGGY 1 cut(s) 148
Cfr13I GGNCC 3 cut(s) 107, 151, 604
Cfr9I CCCGGG 1 cut(s) 166
CseI GACGC 1 cut(s) 580
Csp6I GTAC 2 cut(s) 418, 531
CspAI ACCGGT 1 cut(s) 148
CviAII CATG 5 cut(s) 53, 183, 450, 455, 542
CviJI RGCY 6 cut(s) 108, 113, 171, 232, 357, 447
CviKI_1 RGCY 6 cut(s) 108, 113, 171, 232, 357, 447
CviQI GTAC 2 cut(s) 418, 531
DdeI CTNAG 1 cut(s) 228
DpnI GATC 2 cut(s) 177, 390
DpnII GATC 2 cut(s) 175, 388
Eco130I CCWWGG 2 cut(s) 454, 534
Eco24I GRGCYC 1 cut(s) 449
Eco47I GGWCC 2 cut(s) 151, 604
Eco57I CTGAAG 1 cut(s) 194
Eco88I CYCGRG 1 cut(s) 166
EcoRII CCWGG 2 cut(s) 463, 519
EcoT14I CCWWGG 2 cut(s) 454, 534
EcoT38I GRGCYC 1 cut(s) 449
ErhI CCWWGG 2 cut(s) 454, 534
Esp3I CGTCTC 1 cut(s) 598
FaeI CATG 5 cut(s) 56, 186, 453, 458, 545
FalI AAGNNNNNCTT 4 cut(s) 264, 296, 543, 575
FatI CATG 5 cut(s) 52, 182, 449, 454, 541
Fnu4HI GCNGC 1 cut(s) 100
FokI GGATG 1 cut(s) 311
FriOI GRGCYC 1 cut(s) 449
Fsp4HI GCNGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 100
GsaI CCCAGC 1 cut(s) 113
HaeIII GGCC 1 cut(s) 108
HapII CCGG 3 cut(s) 118, 149, 167
HgaI GACGC 1 cut(s) 580
Hin1II CATG 5 cut(s) 56, 186, 453, 458, 545
HindIII AAGCTT 1 cut(s) 355
HinfI GANTC 1 cut(s) 554
HpaII CCGG 3 cut(s) 118, 149, 167
Hpy188I TCNGA 1 cut(s) 213
Hpy188III TCNNGA 2 cut(s) 25, 71
HpyAV CCTTC 1 cut(s) 343
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4V TGCA 7 cut(s) 52, 81, 182, 186, 284, 541, 563
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 214, 281, 354
HpyF3I CTNAG 1 cut(s) 228
Hsp92II CATG 5 cut(s) 56, 186, 453, 458, 545
Kzo9I GATC 2 cut(s) 175, 388
LmnI GCTCC 1 cut(s) 27
Lsp1109I GCAGC 1 cut(s) 111
LweI GCATC 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 238
MalI GATC 2 cut(s) 177, 390
MboI GATC 2 cut(s) 175, 388
MboII GAAGA 3 cut(s) 4, 315, 318
MfeI CAATTG 1 cut(s) 267
MhlI GDGCHC 1 cut(s) 449
MluCI AATT 4 cut(s) 76, 267, 421, 474
MluI ACGCGT 1 cut(s) 589
MnlI CCTC 2 cut(s) 53, 326
MseI TTAA 1 cut(s) 249
MspI CCGG 3 cut(s) 118, 149, 167
MspR9I CCNGG 4 cut(s) 167, 168, 465, 521
MunI CAATTG 1 cut(s) 267
MvaI CCWGG 2 cut(s) 465, 521
MvnI CGCG 1 cut(s) 591
MwoI GCNNNNNNNGC 4 cut(s) 105, 214, 281, 354
NciI CCSGG 2 cut(s) 167, 168
NcoI CCATGG 1 cut(s) 454
NdeII GATC 2 cut(s) 175, 388
NlaIII CATG 5 cut(s) 56, 186, 453, 458, 545
NlaIV GGNNCC 2 cut(s) 122, 163
NspI RCATGY 1 cut(s) 186
PaeI GCATGC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 554
PflMI CCANNNNNTGG 1 cut(s) 455
PinAI ACCGGT 1 cut(s) 148
PkrI GCNGC 1 cut(s) 101
Psp6I CCWGG 2 cut(s) 463, 519
PspFI CCCAGC 1 cut(s) 109
PspGI CCWGG 2 cut(s) 463, 519
PspN4I GGNNCC 2 cut(s) 122, 163
PspPI GGNCC 3 cut(s) 107, 151, 604
PstNI CAGNNNCTG 1 cut(s) 205
RsaI GTAC 2 cut(s) 419, 532
RsaNI GTAC 2 cut(s) 418, 531
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 1 cut(s) 100
Sau3AI GATC 2 cut(s) 175, 388
Sau96I GGNCC 3 cut(s) 107, 151, 604
ScrFI CCNGG 4 cut(s) 167, 168, 465, 521
SduI GDGCHC 1 cut(s) 449
SfaNI GCATC 1 cut(s) 204
SinI GGWCC 2 cut(s) 151, 604
SmaI CCCGGG 1 cut(s) 168
SphI GCATGC 1 cut(s) 186
Sse9I AATT 4 cut(s) 76, 267, 421, 474
StyD4I CCNGG 4 cut(s) 165, 166, 463, 519
StyI CCWWGG 2 cut(s) 454, 534
TaaI ACNGT 1 cut(s) 382
TaqI TCGA 1 cut(s) 130
TasI AATT 4 cut(s) 76, 267, 421, 474
TatI WGTACW 1 cut(s) 417
TfiI GAWTC 1 cut(s) 554
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 1 cut(s) 210
TseI GCWGC 1 cut(s) 99
TspMI CCCGGG 1 cut(s) 166
TspRI CASTG 1 cut(s) 210
Van91I CCANNNNNTGG 1 cut(s) 455
VpaK11BI GGWCC 2 cut(s) 151, 604
XapI RAATTY 1 cut(s) 474
XceI RCATGY 1 cut(s) 186
XmaI CCCGGG 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.