RchiOBHm_Chr1g0333621

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
25745705 .. 25746173
469 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56242

Sequence Viewer

Length: 414 bp
ATGACTACAGCTAGAGGAACCATGGGGTACATTGCACCTGAAGTGTTCTCAAGAAACTTTGGAAATGAGGAAGAAAGAACATCAGTTCAACAACGTACAGAGAACATAACTGAAGTTTACTACCCAGAATGGATCTATAATCTTTTAGAAGAAGGAGAAGACCTACGAATCCATGTTGAGGAAGAAGAAGATACTGTAATTGCAAGGAGACTTGCGATTGTAGGGCTCTGGTGCATCCAATGGCATCCAATAGATCGTCCTTCCATGAAAGGGGTGGTTCATATGTTGGAAGGAGAAGAGAACATAACCATGGCCCCAAATCCTTTTGCGTCTACAGGTCCTACAGGAACAAGTGCAAGTATGCCTGCAAGAAATAGAAACCTTCAACTAGAAGTAATTGTTGAGTTAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

137

Amino Acids

15.65

Weight (kDa)

4.63

Isoelectric Point (pI)

60.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 332
AclWI GGATC 1 cut(s) 140
AcuI CTGAAG 2 cut(s) 60, 132
AfaI GTAC 2 cut(s) 29, 97
AfiI CCNNNNNNNGG 2 cut(s) 178, 270
AgsI TTSAA 2 cut(s) 89, 386
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 202
AlwI GGATC 1 cut(s) 140
AoxI GGCC 1 cut(s) 312
AspS9I GGNCC 2 cut(s) 313, 338
AvaII GGWCC 1 cut(s) 338
BanII GRGCYC 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 202
BfaI CTAG 2 cut(s) 12, 389
BfmI CTRYAG 3 cut(s) 6, 333, 342
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 2 cut(s) 313, 338
BmiI GGNNCC 2 cut(s) 19, 315
BmsI GCATC 2 cut(s) 243, 253
BpiI GAAGAC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 34
BsaJI CCNNGG 2 cut(s) 21, 309
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 270
Bse3DI GCAATG 1 cut(s) 30
BseDI CCNNGG 2 cut(s) 21, 309
BseGI GGATG 2 cut(s) 234, 244
BseLI CCNNNNNNNGG 2 cut(s) 178, 270
BseMI GCAATG 1 cut(s) 30
BshFI GGCC 1 cut(s) 314
BslI CCNNNNNNNGG 2 cut(s) 178, 270
BsmAI GTCTC 1 cut(s) 202
BsnI GGCC 1 cut(s) 314
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 2 cut(s) 132, 253
Bsp19I CCATGG 2 cut(s) 21, 309
BspANI GGCC 1 cut(s) 314
BspLI GGNNCC 2 cut(s) 19, 315
BspPI GGATC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 30
BssECI CCNNGG 2 cut(s) 21, 309
BssMI GATC 2 cut(s) 132, 253
BssT1I CCWWGG 2 cut(s) 21, 309
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 291
BstC8I GCNNGC 1 cut(s) 366
BstDSI CCRYGG 2 cut(s) 21, 309
BstF5I GGATG 2 cut(s) 234, 244
BstKTI GATC 2 cut(s) 135, 256
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 2 cut(s) 132, 253
BstSFI CTRYAG 3 cut(s) 6, 333, 342
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 132
BstYI RGATCY 1 cut(s) 132
BsuRI GGCC 1 cut(s) 314
BtgI CCRYGG 2 cut(s) 21, 309
BtsCI GGATG 2 cut(s) 234, 244
Cac8I GCNNGC 1 cut(s) 366
Cfr13I GGNCC 2 cut(s) 313, 338
CseI GACGC 1 cut(s) 318
Csp6I GTAC 2 cut(s) 28, 96
CviAII CATG 4 cut(s) 22, 173, 265, 310
CviJI RGCY 3 cut(s) 11, 226, 314
CviKI_1 RGCY 3 cut(s) 11, 226, 314
CviQI GTAC 2 cut(s) 28, 96
DpnI GATC 2 cut(s) 134, 255
DpnII GATC 2 cut(s) 132, 253
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco130I CCWWGG 2 cut(s) 21, 309
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 338
Eco57I CTGAAG 2 cut(s) 60, 132
EcoO109I RGGNCCY 1 cut(s) 338
EcoT14I CCWWGG 2 cut(s) 21, 309
EcoT38I GRGCYC 1 cut(s) 228
ErhI CCWWGG 2 cut(s) 21, 309
FaeI CATG 4 cut(s) 25, 176, 268, 313
FatI CATG 4 cut(s) 21, 172, 264, 309
FauNDI CATATG 1 cut(s) 282
FblI GTMKAC 1 cut(s) 332
FokI GGATG 2 cut(s) 221, 231
FriOI GRGCYC 1 cut(s) 228
FspBI CTAG 2 cut(s) 12, 389
HaeIII GGCC 1 cut(s) 314
HgaI GACGC 1 cut(s) 318
Hin1II CATG 4 cut(s) 25, 176, 268, 313
HinfI GANTC 1 cut(s) 168
Hpy166II GTNNAC 2 cut(s) 118, 333
Hpy188III TCNNGA 1 cut(s) 51
Hpy8I GTNNAC 2 cut(s) 118, 333
HpyAV CCTTC 4 cut(s) 146, 270, 284, 392
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 5 cut(s) 35, 203, 234, 356, 368
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 4 cut(s) 25, 176, 268, 313
Kzo9I GATC 2 cut(s) 132, 253
LpnPI CCDG 6 cut(s) 51, 138, 214, 321, 330, 378
LweI GCATC 2 cut(s) 243, 253
MaeI CTAG 2 cut(s) 12, 389
MaeII ACGT 1 cut(s) 94
MalI GATC 2 cut(s) 134, 255
MboI GATC 2 cut(s) 132, 253
MboII GAAGA 7 cut(s) 83, 161, 170, 194, 197, 200, 308
MflI RGATCY 1 cut(s) 132
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 2 cut(s) 198, 396
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 3 cut(s) 8, 61, 172
MslI CAYNNNNRTG 1 cut(s) 308
NcoI CCATGG 2 cut(s) 21, 309
NdeI CATATG 1 cut(s) 282
NdeII GATC 2 cut(s) 132, 253
NlaIII CATG 4 cut(s) 25, 176, 268, 313
NlaIV GGNNCC 2 cut(s) 19, 315
PfeI GAWTC 1 cut(s) 168
PpuMI RGGWCCY 1 cut(s) 338
Psp5II RGGWCCY 1 cut(s) 338
PspN4I GGNNCC 2 cut(s) 19, 315
PspPI GGNCC 2 cut(s) 313, 338
PspPPI RGGWCCY 1 cut(s) 338
PsuI RGATCY 1 cut(s) 132
RsaI GTAC 2 cut(s) 29, 97
RsaNI GTAC 2 cut(s) 28, 96
RseI CAYNNNNRTG 1 cut(s) 308
Sau3AI GATC 2 cut(s) 132, 253
Sau96I GGNCC 2 cut(s) 313, 338
SduI GDGCHC 1 cut(s) 228
SetI ASST 6 cut(s) 13, 40, 97, 165, 340, 384
SfaNI GCATC 2 cut(s) 243, 253
SfcI CTRYAG 3 cut(s) 6, 333, 342
SinI GGWCC 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 2 cut(s) 198, 396
SspMI CTAG 2 cut(s) 12, 389
StyI CCWWGG 2 cut(s) 21, 309
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 97
TasI AATT 2 cut(s) 198, 396
TfiI GAWTC 1 cut(s) 168
TspDTI ATGAA 2 cut(s) 269, 281
VpaK11BI GGWCC 1 cut(s) 338
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 332
XspI CTAG 2 cut(s) 12, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.