RchiOBHm_Chr1g0324371

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000107
Physical Location & Seq
Reverse (-)
12045830 .. 12046855
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55421

Sequence Viewer

Length: 966 bp
ATGAGGGGCTTTCCTATTTCTCGCTCCCTCTGTATTTTTTTTTGTGAGAATAGAATTAGATATTCCTATTCTGATATTAAGAGGATTACAAATCAGTTCAAGGAAAAGTTGGGCCAAGGGGCCTATGGTGCCGTGTTTAAAGGAACAATTTCTATGGATTTACTTGTTGCTGTGAAGATCCTCAACAATTCAAATGAAAAGGGGGAAGATTTTATAAATGAAGTGGGAACAATGGGTCGAGTTCACCATATAAATATGGTTCGTATGGTTGGCTTCTGTGCTGATGGATATATTCAAGCTCTTGTTTACGAGTTCTTACCAAATGGTTCATTGAAGAATTTCTTATCATCAGCTGATGATAGGAGCTCTTTCCTTGGTTGGGATAAGTTGCAAGAAATTTCTTTAGGTATAGCCAAAGGAATTGAATATCTTCACCAAGGTTGTGACCAACGAATCCTCCATTTTGATATCAAACCCCACAATATTTTGTTGGACCAGAATTTTACACCAAAAGTCTCTGATTTTGGTCTAGTAAAGCTATGCTCTAAGGATCAAAGTGCAATATCCATGACTACAGCTAGGGGGACTATTGGTTACATAGCGCCCGAAGTGTTCTCTAGGAACTTTAGTCATGTCTCTTATAAGTCAGATGTCTATAGTTTTGGAACTTTGTTGCCTGAAATGGTTGGAGGGAGGAAAAATTTTGAAATCATGGAGGACTCCACAAGACAAGTCTACTTTCCAAAATGGATCTATAATCTTTTAGAACAAGGGAATGACCTACGGATTCATATTGAGGATGAAGGAGATGCTAAGTTTGCTAGAAAACTTGCAATTGTGGGTCTTTGGTGCATGCAATGGCACCCAATAGATCGTCCTTCGATGAAAGTTGTAGTTCAAATGTTGGAAAGAGAAGGTGACAATCTAACCATGCCTCCCAATCCCTTTTCATCCACTTCGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

321

Amino Acids

36.51

Weight (kDa)

7.08

Isoelectric Point (pI)

29.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 32 - 302 6.1e-45 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 33 - 300 1.2e-45 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 215, 642
AccB1I GGYRCC 2 cut(s) 128, 861
AccI GTMKAC 1 cut(s) 735
AclWI GGATC 3 cut(s) 172, 558, 758
AcsI RAATTY 4 cut(s) 337, 396, 499, 700
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 7 cut(s) 100, 192, 296, 334, 425, 707, 899
AluBI AGCT 5 cut(s) 299, 353, 366, 538, 578
AluI AGCT 5 cut(s) 299, 353, 366, 538, 578
Alw21I GWGCWC 1 cut(s) 368
Alw26I GTCTC 2 cut(s) 520, 640
AlwI GGATC 3 cut(s) 172, 558, 758
AoxI GGCC 2 cut(s) 112, 120
ApoI RAATTY 4 cut(s) 337, 396, 499, 700
Asp700I GAANNNNTTC 3 cut(s) 148, 338, 429
AspLEI GCGC 1 cut(s) 604
AspS9I GGNCC 3 cut(s) 112, 120, 493
AsuHPI GGTGA 3 cut(s) 236, 425, 929
AsuII TTCGAA 1 cut(s) 959
AvaII GGWCC 1 cut(s) 493
BanI GGYRCC 2 cut(s) 128, 861
BanII GRGCYC 1 cut(s) 368
Bbv12I GWGCWC 1 cut(s) 368
BccI CCATC 1 cut(s) 278
BceAI ACGGC 1 cut(s) 116
BcoDI GTCTC 2 cut(s) 520, 640
BfaI CTAG 4 cut(s) 530, 579, 618, 822
BfmI CTRYAG 2 cut(s) 573, 655
BfoI RGCGCY 1 cut(s) 605
Bme18I GGWCC 1 cut(s) 493
BmgT120I GGNCC 3 cut(s) 112, 120, 493
BmiI GGNNCC 3 cut(s) 121, 130, 863
BmsI GCATC 1 cut(s) 799
Bpu14I TTCGAA 1 cut(s) 959
BsaJI CCNNGG 3 cut(s) 115, 373, 436
BsaXI ACNNNNNCTCC 4 cut(s) 441, 471, 919, 949
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse3DI GCAATG 1 cut(s) 863
BseDI CCNNGG 3 cut(s) 115, 373, 436
BseGI GGATG 2 cut(s) 805, 950
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMI GCAATG 1 cut(s) 863
BshFI GGCC 2 cut(s) 114, 122
BshNI GGYRCC 2 cut(s) 128, 861
BsiHKAI GWGCWC 1 cut(s) 368
BslFI GGGAC 1 cut(s) 598
BslI CCNNNNNNNGG 1 cut(s) 379
BsmAI GTCTC 2 cut(s) 520, 640
BsmFI GGGAC 1 cut(s) 598
BsnI GGCC 2 cut(s) 114, 122
Bsp119I TTCGAA 1 cut(s) 959
Bsp1286I GDGCHC 1 cut(s) 368
Bsp143I GATC 4 cut(s) 177, 550, 750, 871
BspANI GGCC 2 cut(s) 114, 122
BspLI GGNNCC 3 cut(s) 121, 130, 863
BspPI GGATC 3 cut(s) 172, 558, 758
BspT104I TTCGAA 1 cut(s) 959
BspT107I GGYRCC 2 cut(s) 128, 861
BsrDI GCAATG 1 cut(s) 863
BssECI CCNNGG 3 cut(s) 115, 373, 436
BssMI GATC 4 cut(s) 177, 550, 750, 871
BssT1I CCWWGG 3 cut(s) 115, 373, 436
BstBI TTCGAA 1 cut(s) 959
BstC8I GCNNGC 1 cut(s) 854
BstDEI CTNAG 2 cut(s) 546, 813
BstF5I GGATG 2 cut(s) 805, 950
BstH2I RGCGCY 1 cut(s) 605
BstHHI GCGC 1 cut(s) 604
BstKTI GATC 4 cut(s) 180, 553, 753, 874
BstMAI GTCTC 2 cut(s) 520, 640
BstMBI GATC 4 cut(s) 177, 550, 750, 871
BstMWI GCNNNNNNNGC 2 cut(s) 128, 818
BstNSI RCATGY 1 cut(s) 856
BstSFI CTRYAG 2 cut(s) 573, 655
BstX2I RGATCY 2 cut(s) 177, 750
BstYI RGATCY 2 cut(s) 177, 750
BsuRI GGCC 2 cut(s) 114, 122
BtsCI GGATG 2 cut(s) 805, 950
Cac8I GCNNGC 1 cut(s) 854
CfoI GCGC 1 cut(s) 604
Cfr13I GGNCC 3 cut(s) 112, 120, 493
CviAII CATG 5 cut(s) 568, 632, 712, 853, 931
DdeI CTNAG 2 cut(s) 546, 813
DpnI GATC 4 cut(s) 179, 552, 752, 873
DpnII GATC 4 cut(s) 177, 550, 750, 871
DraI TTTAAA 1 cut(s) 139
Ecl136II GAGCTC 1 cut(s) 366
Eco130I CCWWGG 3 cut(s) 115, 373, 436
Eco24I GRGCYC 1 cut(s) 368
Eco32I GATATC 1 cut(s) 469
Eco47I GGWCC 1 cut(s) 493
Eco53kI GAGCTC 1 cut(s) 366
EcoICRI GAGCTC 1 cut(s) 366
EcoO109I RGGNCCY 1 cut(s) 120
EcoRV GATATC 1 cut(s) 469
EcoT14I CCWWGG 3 cut(s) 115, 373, 436
EcoT38I GRGCYC 1 cut(s) 368
ErhI CCWWGG 3 cut(s) 115, 373, 436
FaeI CATG 5 cut(s) 571, 635, 715, 856, 934
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FaqI GGGAC 1 cut(s) 598
FatI CATG 5 cut(s) 567, 631, 711, 852, 930
FblI GTMKAC 1 cut(s) 735
FokI GGATG 2 cut(s) 812, 937
FriOI GRGCYC 1 cut(s) 368
FspBI CTAG 4 cut(s) 530, 579, 618, 822
GlaI GCGC 1 cut(s) 603
HaeII RGCGCY 1 cut(s) 605
HaeIII GGCC 2 cut(s) 114, 122
HhaI GCGC 1 cut(s) 604
Hin1II CATG 5 cut(s) 571, 635, 715, 856, 934
Hin6I GCGC 1 cut(s) 602
HinP1I GCGC 1 cut(s) 602
HinfI GANTC 3 cut(s) 453, 719, 787
HphI GGTGA 3 cut(s) 236, 425, 929
Hpy166II GTNNAC 3 cut(s) 244, 307, 736
Hpy188I TCNGA 3 cut(s) 73, 520, 649
Hpy8I GTNNAC 3 cut(s) 244, 307, 736
HpyAV CCTTC 3 cut(s) 797, 888, 908
HpyCH4V TGCA 5 cut(s) 391, 560, 833, 852, 856
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 818
HpyF3I CTNAG 2 cut(s) 546, 813
Hsp92II CATG 5 cut(s) 571, 635, 715, 856, 934
HspAI GCGC 1 cut(s) 602
Kzo9I GATC 4 cut(s) 177, 550, 750, 871
LmnI GCTCC 2 cut(s) 29, 363
LpnPI CCDG 2 cut(s) 509, 690
LweI GCATC 1 cut(s) 799
MaeI CTAG 4 cut(s) 530, 579, 618, 822
MaeIII GTNAC 3 cut(s) 443, 593, 917
MalI GATC 4 cut(s) 179, 552, 752, 873
MboI GATC 4 cut(s) 177, 550, 750, 871
MboII GAAGA 4 cut(s) 187, 218, 346, 422
MfeI CAATTG 1 cut(s) 834
MflI RGATCY 2 cut(s) 177, 750
MhlI GDGCHC 1 cut(s) 368
MlyI GAGTC 1 cut(s) 713
MmeI TCCRAC 3 cut(s) 471, 667, 885
MnlI CCTC 9 cut(s) 38, 75, 191, 467, 683, 687, 709, 790, 945
MroXI GAANNNNTTC 3 cut(s) 148, 338, 429
MseI TTAA 2 cut(s) 78, 138
MspA1I CMGCKG 1 cut(s) 353
MunI CAATTG 1 cut(s) 834
MwoI GCNNNNNNNGC 2 cut(s) 128, 818
NdeII GATC 4 cut(s) 177, 550, 750, 871
NlaIII CATG 5 cut(s) 571, 635, 715, 856, 934
NlaIV GGNNCC 3 cut(s) 121, 130, 863
NmuCI GTSAC 2 cut(s) 443, 917
NspI RCATGY 1 cut(s) 856
NspV TTCGAA 1 cut(s) 959
PaeI GCATGC 1 cut(s) 856
PdmI GAANNNNTTC 3 cut(s) 148, 338, 429
PfeI GAWTC 2 cut(s) 453, 787
PleI GAGTC 1 cut(s) 713
PpsI GAGTC 1 cut(s) 713
PsiI TTATAA 2 cut(s) 215, 642
Psp124BI GAGCTC 1 cut(s) 368
PspN4I GGNNCC 3 cut(s) 121, 130, 863
PspPI GGNCC 3 cut(s) 112, 120, 493
PsuI RGATCY 2 cut(s) 177, 750
PvuII CAGCTG 1 cut(s) 353
SacI GAGCTC 1 cut(s) 368
SaqAI TTAA 2 cut(s) 78, 138
Sau3AI GATC 4 cut(s) 177, 550, 750, 871
Sau96I GGNCC 3 cut(s) 112, 120, 493
SchI GAGTC 1 cut(s) 713
SduI GDGCHC 1 cut(s) 368
SetI ASST 9 cut(s) 301, 355, 368, 409, 442, 540, 580, 783, 919
SfaNI GCATC 1 cut(s) 799
SfcI CTRYAG 2 cut(s) 573, 655
SfuI TTCGAA 1 cut(s) 959
SinI GGWCC 1 cut(s) 493
SphI GCATGC 1 cut(s) 856
SspI AATATT 1 cut(s) 484
SspMI CTAG 4 cut(s) 530, 579, 618, 822
SstI GAGCTC 1 cut(s) 368
StyI CCWWGG 3 cut(s) 115, 373, 436
TaqI TCGA 3 cut(s) 238, 881, 959
TfiI GAWTC 2 cut(s) 453, 787
Tru1I TTAA 2 cut(s) 78, 138
Tru9I TTAA 2 cut(s) 78, 138
TseFI GTSAC 2 cut(s) 443, 917
Tsp45I GTSAC 2 cut(s) 443, 917
TspDTI ATGAA 7 cut(s) 210, 234, 318, 779, 816, 899, 939
TspGWI ACGGA 1 cut(s) 799
VpaK11BI GGWCC 1 cut(s) 493
XapI RAATTY 4 cut(s) 337, 396, 499, 700
XceI RCATGY 1 cut(s) 856
XcmI CCANNNNNNNNNTGG 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 735
XmnI GAANNNNTTC 3 cut(s) 148, 338, 429
XspI CTAG 4 cut(s) 530, 579, 618, 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.