Rroxscaffold_4G00317620

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000107
Physical Location & Seq
Reverse (-)
43029869 .. 43031292
1424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00317620.1

Sequence Viewer

Length: 441 bp
ATGATATCAGCATGTCTGACCATCCTTCTTGCTTCATCTTTTCTGGTAGTGAATGCGATCGCTGTGATTGTGGAGATCCTTGTGGTGGAGTGTCCTCGTTCTGAAGATGTGGCTATAGCCTCAGATTTTGCCTGGGTTATGGGATTTGAGTGGATCTATAATCTCCTAGAAGCAGGACAAGACTTGCGTATGGATATTGGCGAAGAAGGATCAGATTCTACAATTGCAAAAGAATTGGCGATTGTGGGACTTTGGTGCATACAATGGCACCCGGTGGATCGTCCATCCATGAAAGTAGTGGTTCATATGTTGGAAGGAAGAGAAAACTTAAGTATGCCGCCTAATCCTTTTGGCTCTACAGGTCCTACTAGAACAAATGCAATTCTCCCAGCTTTACGACGCTTGAACCTTGAGTTAGAAGCAATTGCTGAATTAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

146

Amino Acids

16.08

Weight (kDa)

4.48

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 267
AciI CCGC 1 cut(s) 338
AclWI GGATC 4 cut(s) 70, 161, 217, 285
AcuI CTGAAG 1 cut(s) 123
AdeI CACNNNGTG 1 cut(s) 274
AfiI CCNNNNNNNGG 1 cut(s) 85
AflII CTTAAG 1 cut(s) 328
AgsI TTSAA 1 cut(s) 406
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 1 cut(s) 392
AluI AGCT 1 cut(s) 392
AlwI GGATC 4 cut(s) 70, 161, 217, 285
AsiSI GCGATCGC 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 362
AsuC2I CCSGG 1 cut(s) 272
AvaII GGWCC 1 cut(s) 362
BanI GGYRCC 1 cut(s) 267
BccI CCATC 2 cut(s) 29, 292
BciT130I CCWGG 1 cut(s) 133
BcnI CCSGG 1 cut(s) 272
BfaI CTAG 2 cut(s) 167, 369
BfmI CTRYAG 2 cut(s) 114, 357
BfrI CTTAAG 1 cut(s) 328
BisI GCNGC 1 cut(s) 338
BlsI GCNGC 1 cut(s) 339
Bme1390I CCNGG 2 cut(s) 133, 272
Bme18I GGWCC 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 362
BmiI GGNNCC 1 cut(s) 269
BmrFI CCNGG 2 cut(s) 133, 272
BpuEI CTTGAG 1 cut(s) 431
BpuMI CCSGG 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 85
BseBI CCWGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 2 cut(s) 21, 284
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 135
BseYI CCCAGC 1 cut(s) 388
Bsh1285I CGRYCG 1 cut(s) 60
BshNI GGYRCC 1 cut(s) 267
BsiEI CGRYCG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 272
BslFI GGGAC 1 cut(s) 261
BslI CCNNNNNNNGG 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 261
BsmI GAATGC 1 cut(s) 58
Bsp143I GATC 5 cut(s) 57, 75, 153, 209, 277
BspACI CCGC 1 cut(s) 338
BspCNI CTCAG 1 cut(s) 134
BspLI GGNNCC 1 cut(s) 269
BspPI GGATC 4 cut(s) 70, 161, 217, 285
BspT107I GGYRCC 1 cut(s) 267
BspTI CTTAAG 1 cut(s) 328
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 5 cut(s) 57, 75, 153, 209, 277
Bst2UI CCWGG 1 cut(s) 133
Bst6I CTCTTC 1 cut(s) 313
BstAFI CTTAAG 1 cut(s) 328
BstDEI CTNAG 1 cut(s) 121
BstF5I GGATG 2 cut(s) 21, 284
BstKTI GATC 5 cut(s) 60, 78, 156, 212, 280
BstMBI GATC 5 cut(s) 57, 75, 153, 209, 277
BstMCI CGRYCG 1 cut(s) 60
BstNI CCWGG 1 cut(s) 133
BstNSI RCATGY 1 cut(s) 15
BstSCI CCNGG 2 cut(s) 131, 270
BstSFI CTRYAG 2 cut(s) 114, 357
BstX2I RGATCY 2 cut(s) 75, 153
BstYI RGATCY 2 cut(s) 75, 153
BtsCI GGATG 2 cut(s) 21, 284
Cfr13I GGNCC 1 cut(s) 362
CseI GACGC 1 cut(s) 408
CviAII CATG 2 cut(s) 12, 289
CviJI RGCY 4 cut(s) 113, 119, 354, 392
CviKI_1 RGCY 4 cut(s) 113, 119, 354, 392
DdeI CTNAG 1 cut(s) 121
DpnI GATC 5 cut(s) 59, 77, 155, 211, 279
DpnII GATC 5 cut(s) 57, 75, 153, 209, 277
DraIII CACNNNGTG 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 313
EarI CTCTTC 1 cut(s) 313
Eco32I GATATC 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 362
Eco57I CTGAAG 1 cut(s) 123
EcoO109I RGGNCCY 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 131
EcoRV GATATC 1 cut(s) 6
FaeI CATG 2 cut(s) 15, 292
FaqI GGGAC 1 cut(s) 261
FatI CATG 2 cut(s) 11, 288
FauNDI CATATG 1 cut(s) 306
Fnu4HI GCNGC 1 cut(s) 338
FokI GGATG 2 cut(s) 8, 271
Fsp4HI GCNGC 1 cut(s) 338
FspBI CTAG 2 cut(s) 167, 369
GluI GCNGC 1 cut(s) 338
GsaI CCCAGC 1 cut(s) 392
HapII CCGG 1 cut(s) 272
HgaI GACGC 1 cut(s) 408
Hin1II CATG 2 cut(s) 15, 292
HinfI GANTC 1 cut(s) 215
HpaII CCGG 1 cut(s) 272
Hpy188I TCNGA 4 cut(s) 18, 103, 124, 214
Hpy99I CGWCG 1 cut(s) 402
HpyAV CCTTC 3 cut(s) 35, 200, 308
HpyCH4V TGCA 3 cut(s) 227, 258, 380
HpyF3I CTNAG 1 cut(s) 121
Hsp92II CATG 2 cut(s) 15, 292
Kzo9I GATC 5 cut(s) 57, 75, 153, 209, 277
LpnPI CCDG 7 cut(s) 29, 118, 145, 159, 285, 345, 402
MaeI CTAG 2 cut(s) 167, 369
MalI GATC 5 cut(s) 59, 77, 155, 211, 279
MboI GATC 5 cut(s) 57, 75, 153, 209, 277
MboII GAAGA 3 cut(s) 116, 215, 330
MfeI CAATTG 2 cut(s) 222, 423
MflI RGATCY 2 cut(s) 75, 153
MluCI AATT 5 cut(s) 222, 233, 381, 423, 431
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 2 cut(s) 105, 130
MseI TTAA 1 cut(s) 329
MspCI CTTAAG 1 cut(s) 328
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 2 cut(s) 133, 272
MunI CAATTG 2 cut(s) 222, 423
Mva1269I GAATGC 1 cut(s) 58
MvaI CCWGG 1 cut(s) 133
NciI CCSGG 1 cut(s) 272
NdeI CATATG 1 cut(s) 306
NdeII GATC 5 cut(s) 57, 75, 153, 209, 277
NlaIII CATG 2 cut(s) 15, 292
NlaIV GGNNCC 1 cut(s) 269
NspI RCATGY 1 cut(s) 15
PctI GAATGC 1 cut(s) 58
PfeI GAWTC 1 cut(s) 215
PkrI GCNGC 1 cut(s) 339
Ple19I CGATCG 1 cut(s) 60
PpuMI RGGWCCY 1 cut(s) 362
Psp5II RGGWCCY 1 cut(s) 362
Psp6I CCWGG 1 cut(s) 131
PspFI CCCAGC 1 cut(s) 388
PspGI CCWGG 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 269
PspPI GGNCC 1 cut(s) 362
PspPPI RGGWCCY 1 cut(s) 362
PsuI RGATCY 2 cut(s) 75, 153
PvuI CGATCG 1 cut(s) 60
RgaI GCGATCGC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 329
SatI GCNGC 1 cut(s) 338
Sau3AI GATC 5 cut(s) 57, 75, 153, 209, 277
Sau96I GGNCC 1 cut(s) 362
ScrFI CCNGG 2 cut(s) 133, 272
SetI ASST 3 cut(s) 364, 394, 411
SfaAI GCGATCGC 1 cut(s) 60
SfcI CTRYAG 2 cut(s) 114, 357
SgfI GCGATCGC 1 cut(s) 60
SinI GGWCC 1 cut(s) 362
SmlI CTYRAG 2 cut(s) 328, 410
SmoI CTYRAG 2 cut(s) 328, 410
Sse9I AATT 5 cut(s) 222, 233, 381, 423, 431
SsiI CCGC 1 cut(s) 338
SspMI CTAG 2 cut(s) 167, 369
StyD4I CCNGG 2 cut(s) 131, 270
TasI AATT 5 cut(s) 222, 233, 381, 423, 431
TauI GCSGC 1 cut(s) 340
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 1 cut(s) 329
Tru9I TTAA 1 cut(s) 329
TspDTI ATGAA 3 cut(s) 24, 293, 305
Vha464I CTTAAG 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 362
XceI RCATGY 1 cut(s) 15
XcmI CCANNNNNNNNNTGG 1 cut(s) 295
XspI CTAG 2 cut(s) 167, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.