Rw1G010940

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
24760433 .. 24761233
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G010940.1

Sequence Viewer

Length: 801 bp
ATGGGACATATCCATCATGTCAATGTGGTTCGATTGGTTGGATTCTGTGCGGATGGATTTAGACGAGCTCTTGTTTATGACTTCTTACCCAATGGTTCACTACAAGATTTCATTTCATCAGCAGACAATAACAATTCTTTCCTTGGTTGGGGTAAGTTGCAAGACATTTCTCTTGGAATAGCAAAAGGAATTGAATATCTGCACCAAGGATGCAATCAACGGATCCTACATTTTGATATCAAACCCCATAATGTTTTGCTAGACCATAACTTCAACGCAAAGATTTCCGATTTTGGTTTGGCCAAGTTATGTTCCAAGGATCAAAGCATAGTGTCAATGACTACCGCCAGGGGAACGATGGGGTACATTGCACCTGAAGTGTTCTCCAGAAACTTTGGAAATGTGTCCTATAAGTCAGATGTCTATAGCTATGGAATGGTACTGCTTGAGATTGTAGGAGGGAGAAAGAACATTGGTTCAACCACAGAGAACACCAATGAAATTTACTACCCAGAATGGATCTATAATCTTCTAGAAGAAAAAGATGACCTACGTATCAATGTAGGGGAAGAAGGAGATGCTAAAATTGCAAAGAGACTTGCGATTGTAGGTCTCTGGTGCATTCAATGGCACCCTGCAGATCGTCCTTCTATGCAAGGGGTGGTTCAGATGTTGGAAGAAGGAGAAAACTTAACCATGCCTCCAAATCCTTTTGCCTCTCAGGGTCCAGCAGGAACAAATACAAGTACACCTTCAAGAAATTTAAATCTCCAACTAGAAATAATTCCCGAGTTAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

266

Amino Acids

29.66

Weight (kDa)

5.49

Isoelectric Point (pI)

37.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 225 1.2e-32 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 2 - 223 4.9e-36 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 630
AciI CCGC 2 cut(s) 50, 345
AclWI GGATC 4 cut(s) 217, 230, 327, 527
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 2 cut(s) 501, 760
AcuI CTGAAG 1 cut(s) 396
AfaI GTAC 3 cut(s) 365, 441, 748
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 5 cut(s) 194, 274, 480, 626, 756
AjnI CCWGG 1 cut(s) 347
AluBI AGCT 2 cut(s) 68, 429
AluI AGCT 2 cut(s) 68, 429
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 2 cut(s) 589, 617
AlwI GGATC 4 cut(s) 217, 230, 327, 527
Ama87I CYCGRG 1 cut(s) 788
AoxI GGCC 1 cut(s) 300
ApoI RAATTY 2 cut(s) 501, 760
Asp700I GAANNNNTTC 1 cut(s) 783
AspS9I GGNCC 1 cut(s) 725
AvaI CYCGRG 1 cut(s) 788
AvaII GGWCC 1 cut(s) 725
BaeI ACNNNNGTAYC 2 cut(s) 538, 571
BalI TGGCCA 1 cut(s) 302
BamHI GGATCC 1 cut(s) 222
BanI GGYRCC 1 cut(s) 630
BanII GRGCYC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 70
BccI CCATC 3 cut(s) 21, 47, 352
BciT130I CCWGG 1 cut(s) 349
BcoDI GTCTC 2 cut(s) 589, 617
BfaI CTAG 3 cut(s) 260, 533, 776
BfmI CTRYAG 2 cut(s) 424, 636
Bme1390I CCNGG 1 cut(s) 349
Bme18I GGWCC 1 cut(s) 725
BmeT110I CYCGRG 1 cut(s) 788
BmgT120I GGNCC 1 cut(s) 725
BmiI GGNNCC 3 cut(s) 224, 632, 726
BmrFI CCNGG 1 cut(s) 349
BmsI GCATC 2 cut(s) 200, 568
BpmI CTGGAG 1 cut(s) 370
BpuEI CTTGAG 1 cut(s) 467
BsaAI YACGTR 1 cut(s) 554
BsaI GGTCTC 1 cut(s) 617
BsaJI CCNNGG 4 cut(s) 142, 205, 315, 348
BsaXI ACNNNNNCTCC 2 cut(s) 685, 715
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse3DI GCAATG 1 cut(s) 366
BseBI CCWGG 1 cut(s) 349
BseDI CCNNGG 4 cut(s) 142, 205, 315, 348
BseGI GGATG 2 cut(s) 58, 215
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 1 cut(s) 734
BsgI GTGCAG 1 cut(s) 185
BshFI GGCC 1 cut(s) 302
BshNI GGYRCC 1 cut(s) 630
BsiHKAI GWGCWC 1 cut(s) 70
BsiHKCI CYCGRG 1 cut(s) 788
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 2 cut(s) 589, 617
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 621
BsnI GGCC 1 cut(s) 302
Bso31I GGTCTC 1 cut(s) 617
BsoBI CYCGRG 1 cut(s) 788
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 4 cut(s) 222, 319, 519, 640
BspACI CCGC 2 cut(s) 50, 345
BspANI GGCC 1 cut(s) 302
BspCNI CTCAG 1 cut(s) 733
BspLI GGNNCC 3 cut(s) 224, 632, 726
BspMAI CTGCAG 1 cut(s) 640
BspPI GGATC 4 cut(s) 217, 230, 327, 527
BspT107I GGYRCC 1 cut(s) 630
BspTNI GGTCTC 1 cut(s) 617
BsrDI GCAATG 1 cut(s) 366
BssECI CCNNGG 4 cut(s) 142, 205, 315, 348
BssMI GATC 4 cut(s) 222, 319, 519, 640
BssT1I CCWWGG 3 cut(s) 142, 205, 315
Bst2UI CCWGG 1 cut(s) 349
BstBAI YACGTR 1 cut(s) 554
BstDEI CTNAG 1 cut(s) 720
BstF5I GGATG 2 cut(s) 58, 215
BstKTI GATC 4 cut(s) 225, 322, 522, 643
BstMAI GTCTC 2 cut(s) 589, 617
BstMBI GATC 4 cut(s) 222, 319, 519, 640
BstMWI GCNNNNNNNGC 1 cut(s) 587
BstNI CCWGG 1 cut(s) 349
BstSCI CCNGG 1 cut(s) 347
BstSFI CTRYAG 2 cut(s) 424, 636
BstSNI TACGTA 1 cut(s) 554
BstX2I RGATCY 2 cut(s) 222, 519
BstYI RGATCY 2 cut(s) 222, 519
BsuRI GGCC 1 cut(s) 302
BtsCI GGATG 2 cut(s) 58, 215
Cfr13I GGNCC 1 cut(s) 725
Csp6I GTAC 3 cut(s) 364, 440, 747
CviAII CATG 2 cut(s) 17, 697
CviJI RGCY 3 cut(s) 68, 302, 429
CviKI_1 RGCY 3 cut(s) 68, 302, 429
CviQI GTAC 3 cut(s) 364, 440, 747
DdeI CTNAG 1 cut(s) 720
DpnI GATC 4 cut(s) 224, 321, 521, 642
DpnII GATC 4 cut(s) 222, 319, 519, 640
DraI TTTAAA 1 cut(s) 765
EaeI YGGCCR 1 cut(s) 300
Ecl136II GAGCTC 1 cut(s) 68
Eco105I TACGTA 1 cut(s) 554
Eco130I CCWWGG 3 cut(s) 142, 205, 315
Eco24I GRGCYC 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 617
Eco32I GATATC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 725
Eco53kI GAGCTC 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 396
Eco88I CYCGRG 1 cut(s) 788
EcoICRI GAGCTC 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 347
EcoRV GATATC 1 cut(s) 238
EcoT14I CCWWGG 3 cut(s) 142, 205, 315
EcoT38I GRGCYC 1 cut(s) 70
ErhI CCWWGG 3 cut(s) 142, 205, 315
FaeI CATG 2 cut(s) 20, 700
FalI AAGNNNNNCTT 2 cut(s) 736, 768
FaqI GGGAC 1 cut(s) 18
FatI CATG 2 cut(s) 16, 696
FokI GGATG 2 cut(s) 65, 222
FriOI GRGCYC 1 cut(s) 70
FspBI CTAG 3 cut(s) 260, 533, 776
GsuI CTGGAG 1 cut(s) 370
HaeIII GGCC 1 cut(s) 302
Hin1II CATG 2 cut(s) 20, 700
HinfI GANTC 1 cut(s) 42
Hpy166II GTNNAC 2 cut(s) 98, 749
Hpy188I TCNGA 3 cut(s) 289, 418, 669
Hpy188III TCNNGA 4 cut(s) 387, 533, 756, 788
Hpy8I GTNNAC 2 cut(s) 98, 749
HpyAV CCTTC 4 cut(s) 566, 657, 674, 762
HpyCH4IV ACGT 1 cut(s) 553
HpyCH4V TGCA 8 cut(s) 160, 202, 213, 371, 590, 621, 638, 655
HpyF10VI GCNNNNNNNGC 1 cut(s) 587
HpyF3I CTNAG 1 cut(s) 720
HpySE526I ACGT 1 cut(s) 553
Hsp92II CATG 2 cut(s) 20, 700
Kzo9I GATC 4 cut(s) 222, 319, 519, 640
LweI GCATC 2 cut(s) 200, 568
MaeI CTAG 3 cut(s) 260, 533, 776
MaeII ACGT 1 cut(s) 553
MalI GATC 4 cut(s) 224, 321, 521, 642
MboI GATC 4 cut(s) 222, 319, 519, 640
MboII GAAGA 4 cut(s) 521, 548, 581, 689
MflI RGATCY 2 cut(s) 222, 519
MhlI GDGCHC 1 cut(s) 70
MlsI TGGCCA 1 cut(s) 302
MluCI AATT 6 cut(s) 133, 189, 501, 585, 760, 783
MluNI TGGCCA 1 cut(s) 302
MmeI TCCRAC 3 cut(s) 19, 654, 796
MnlI CCTC 3 cut(s) 452, 711, 727
Mox20I TGGCCA 1 cut(s) 302
MroXI GAANNNNTTC 1 cut(s) 783
MscI TGGCCA 1 cut(s) 302
MseI TTAA 2 cut(s) 692, 764
MslI CAYNNNNRTG 1 cut(s) 21
Msp20I TGGCCA 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 349
Mva1269I GAATGC 1 cut(s) 621
MvaI CCWGG 1 cut(s) 349
MwoI GCNNNNNNNGC 1 cut(s) 587
NdeII GATC 4 cut(s) 222, 319, 519, 640
NlaIII CATG 2 cut(s) 20, 700
NlaIV GGNNCC 3 cut(s) 224, 632, 726
PctI GAATGC 1 cut(s) 621
PdmI GAANNNNTTC 1 cut(s) 783
PfeI GAWTC 1 cut(s) 42
Ppu21I YACGTR 1 cut(s) 554
Psp124BI GAGCTC 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 347
PspGI CCWGG 1 cut(s) 347
PspN4I GGNNCC 3 cut(s) 224, 632, 726
PspPI GGNCC 1 cut(s) 725
PstI CTGCAG 1 cut(s) 640
PsuI RGATCY 2 cut(s) 222, 519
RsaI GTAC 3 cut(s) 365, 441, 748
RsaNI GTAC 3 cut(s) 364, 440, 747
RseI CAYNNNNRTG 1 cut(s) 21
SacI GAGCTC 1 cut(s) 70
SaqAI TTAA 2 cut(s) 692, 764
Sau3AI GATC 4 cut(s) 222, 319, 519, 640
Sau96I GGNCC 1 cut(s) 725
ScrFI CCNGG 1 cut(s) 349
SduI GDGCHC 1 cut(s) 70
SetI ASST 7 cut(s) 70, 376, 431, 552, 556, 613, 754
SfaNI GCATC 2 cut(s) 200, 568
SfcI CTRYAG 2 cut(s) 424, 636
SinI GGWCC 1 cut(s) 725
SmiI ATTTAAAT 1 cut(s) 765
SmiMI CAYNNNNRTG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
SnaBI TACGTA 1 cut(s) 554
Sse9I AATT 6 cut(s) 133, 189, 501, 585, 760, 783
SsiI CCGC 2 cut(s) 50, 345
SspMI CTAG 3 cut(s) 260, 533, 776
SstI GAGCTC 1 cut(s) 70
StyD4I CCNGG 1 cut(s) 347
StyI CCWWGG 3 cut(s) 142, 205, 315
SwaI ATTTAAAT 1 cut(s) 765
TaiI ACGT 1 cut(s) 556
TaqI TCGA 1 cut(s) 31
TasI AATT 6 cut(s) 133, 189, 501, 585, 760, 783
TatI WGTACW 1 cut(s) 746
TfiI GAWTC 1 cut(s) 42
Tru1I TTAA 2 cut(s) 692, 764
Tru9I TTAA 2 cut(s) 692, 764
TspDTI ATGAA 3 cut(s) 100, 105, 513
TspGWI ACGGA 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 725
XapI RAATTY 2 cut(s) 501, 760
XbaI TCTAGA 1 cut(s) 532
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XmnI GAANNNNTTC 1 cut(s) 783
XspI CTAG 3 cut(s) 260, 533, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.