Rroxscaffold_4G00316500

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
41361204 .. 41363726
2523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00316500.1

Sequence Viewer

Length: 804 bp
ATGGGTCGTATCCACCATGTCAATGTGGTTCGCTTGGTTGGCTTCTGCGCTGATGGATTTAGACGCGCTCTGGTGTACGAGTTCTCGCCCAATGGCGCACTACATCAATTCATTTCCTCAGCAGATAATAAGAATGGTTTTCTTGGTTGGAATAAGTATCTAGATATTTCTATAGGAATAGCAAAAGGAATTGAATATCTACACCAAGGATGCGATCAGCGAATTCTCCATTTCGACATCAAACCCCACAATGTTTTGCTTGACCATAACTTGACTCCGAAAATTTCTGATTTTGGTTTGTCAAAGTTATGTGCCAAGGATCAAAGTATAGTGTCAATGACTACTGCTAGGGGGACAATTGGATACATTGCACCAGAAGTGTTCTCCAGGAATTTCGGGAATGTATCTTATAAGTCAGATGTCTATAGTTTTGGAATGTTGTTGCTTGAGATTGTAGGGGGGAGGAACAATAAGGGTGCAGATCTGGACTCCGGTAATGACGTTTACTACCCAGAATGGATTTACAATCTTCTAGAAGAAGGAGAAGATGTACGAGTCCGAATTGAGGAGAAAGGAGATGCTATAATTGCAAAGAAACTTGCAGTTGTAGGGCTTTGGTGCATCCAATGGCACCCGGTGGACCGTCCATCGATGAAAGTAGTTGTCCAAATGTTGGAAGGAAGAGAAAATTTAGAAATGCCTCCCAATCCTTTTGGCTCTACAGATCATACAAGAACTTATGCAAACCCCCCAACTGCTAGACGCTTCAACCCTGAGTTAGAAGCAATTGTTGAATTAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

267

Amino Acids

30.05

Weight (kDa)

6.0

Isoelectric Point (pI)

33.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 225 1.4e-32 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 2 - 223 3.8e-32 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 411
AccB1I GGYRCC 1 cut(s) 630
AccB7I CCANNNNNTGG 1 cut(s) 673
AccII CGCG 1 cut(s) 66
AclWI GGATC 1 cut(s) 327
AcsI RAATTY 4 cut(s) 222, 282, 391, 688
AdeI CACNNNGTG 1 cut(s) 637
AfaI GTAC 2 cut(s) 77, 552
AfiI CCNNNNNNNGG 2 cut(s) 565, 673
AgsI TTSAA 3 cut(s) 194, 769, 794
AjnI CCWGG 1 cut(s) 386
AlwI GGATC 1 cut(s) 327
ApoI RAATTY 4 cut(s) 222, 282, 391, 688
AspLEI GCGC 3 cut(s) 50, 68, 98
AspS9I GGNCC 1 cut(s) 640
AsuC2I CCSGG 1 cut(s) 635
AvaII GGWCC 1 cut(s) 640
BanI GGYRCC 1 cut(s) 630
BbvCI CCTCAGC 1 cut(s) 118
BccI CCATC 2 cut(s) 47, 655
BciT130I CCWGG 1 cut(s) 388
BciVI GTATCC 2 cut(s) 20, 356
BcnI CCSGG 1 cut(s) 635
BfaI CTAG 4 cut(s) 161, 348, 533, 759
BfmI CTRYAG 3 cut(s) 171, 424, 720
BfuI GTATCC 2 cut(s) 20, 356
BglII AGATCT 1 cut(s) 481
Bme1390I CCNGG 2 cut(s) 388, 635
Bme18I GGWCC 1 cut(s) 640
BmgT120I GGNCC 1 cut(s) 640
BmiI GGNNCC 1 cut(s) 632
BmrFI CCNGG 2 cut(s) 388, 635
BmsI GCATC 3 cut(s) 200, 568, 630
BpmI CTGGAG 1 cut(s) 370
Bpu10I CCTNAGC 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 467
BpuMI CCSGG 1 cut(s) 635
Bsa29I ATCGAT 1 cut(s) 650
BsaJI CCNNGG 2 cut(s) 205, 315
BsaWI WCCGGW 1 cut(s) 491
BsaXI ACNNNNNCTCC 2 cut(s) 534, 564
Bsc4I CCNNNNNNNGG 2 cut(s) 565, 673
Bse3DI GCAATG 1 cut(s) 366
BseBI CCWGG 1 cut(s) 388
BseCI ATCGAT 1 cut(s) 650
BseDI CCNNGG 2 cut(s) 205, 315
BseGI GGATG 2 cut(s) 215, 621
BseLI CCNNNNNNNGG 2 cut(s) 565, 673
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 2 cut(s) 132, 765
BseRI GAGGAG 1 cut(s) 581
BsgI GTGCAG 1 cut(s) 498
Bsh1236I CGCG 1 cut(s) 66
BshNI GGYRCC 1 cut(s) 630
BshVI ATCGAT 1 cut(s) 650
BsiSI CCGG 2 cut(s) 492, 635
BslFI GGGAC 1 cut(s) 367
BslI CCNNNNNNNGG 2 cut(s) 565, 673
BsmFI GGGAC 1 cut(s) 367
Bsp143I GATC 4 cut(s) 214, 319, 481, 724
BspCNI CTCAG 2 cut(s) 131, 766
BspDI ATCGAT 1 cut(s) 650
BspFNI CGCG 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 632
BspPI GGATC 1 cut(s) 327
BspT107I GGYRCC 1 cut(s) 630
BsrDI GCAATG 1 cut(s) 366
BssECI CCNNGG 2 cut(s) 205, 315
BssMI GATC 4 cut(s) 214, 319, 481, 724
BssT1I CCWWGG 2 cut(s) 205, 315
Bst2UI CCWGG 1 cut(s) 388
Bst4CI ACNGT 1 cut(s) 644
Bst6I CTCTTC 1 cut(s) 676
BstDEI CTNAG 2 cut(s) 118, 774
BstF5I GGATG 2 cut(s) 215, 621
BstFNI CGCG 1 cut(s) 66
BstHHI GCGC 3 cut(s) 50, 68, 98
BstKTI GATC 4 cut(s) 217, 322, 484, 727
BstMBI GATC 4 cut(s) 214, 319, 481, 724
BstMWI GCNNNNNNNGC 2 cut(s) 39, 587
BstNI CCWGG 1 cut(s) 388
BstSCI CCNGG 2 cut(s) 386, 633
BstSFI CTRYAG 3 cut(s) 171, 424, 720
BstUI CGCG 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 481
BstYI RGATCY 1 cut(s) 481
Bsu15I ATCGAT 1 cut(s) 650
BsuI GTATCC 2 cut(s) 20, 356
BsuTUI ATCGAT 1 cut(s) 650
BtsCI GGATG 2 cut(s) 215, 621
CfoI GCGC 3 cut(s) 50, 68, 98
Cfr13I GGNCC 1 cut(s) 640
ClaI ATCGAT 1 cut(s) 650
CseI GACGC 2 cut(s) 72, 771
Csp6I GTAC 2 cut(s) 76, 551
CviAII CATG 1 cut(s) 17
CviJI RGCY 3 cut(s) 42, 613, 717
CviKI_1 RGCY 3 cut(s) 42, 613, 717
CviQI GTAC 2 cut(s) 76, 551
DdeI CTNAG 2 cut(s) 118, 774
DpnI GATC 4 cut(s) 216, 321, 483, 726
DpnII GATC 4 cut(s) 214, 319, 481, 724
DraIII CACNNNGTG 1 cut(s) 637
Eam1104I CTCTTC 1 cut(s) 676
EarI CTCTTC 1 cut(s) 676
Eco130I CCWWGG 2 cut(s) 205, 315
Eco47I GGWCC 1 cut(s) 640
EcoRI GAATTC 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 386
EcoT14I CCWWGG 2 cut(s) 205, 315
ErhI CCWWGG 2 cut(s) 205, 315
FaeI CATG 1 cut(s) 20
FaqI GGGAC 1 cut(s) 367
FatI CATG 1 cut(s) 16
FokI GGATG 2 cut(s) 222, 608
FspBI CTAG 4 cut(s) 161, 348, 533, 759
GlaI GCGC 3 cut(s) 49, 67, 97
GsuI CTGGAG 1 cut(s) 370
HapII CCGG 2 cut(s) 492, 635
HgaI GACGC 2 cut(s) 72, 771
HhaI GCGC 3 cut(s) 50, 68, 98
Hin1II CATG 1 cut(s) 20
Hin6I GCGC 3 cut(s) 48, 66, 96
HinP1I GCGC 3 cut(s) 48, 66, 96
HinfI GANTC 3 cut(s) 274, 488, 555
HpaII CCGG 2 cut(s) 492, 635
Hpy166II GTNNAC 3 cut(s) 76, 505, 640
Hpy188I TCNGA 4 cut(s) 279, 289, 418, 560
Hpy188III TCNNGA 4 cut(s) 161, 397, 485, 533
Hpy8I GTNNAC 3 cut(s) 76, 505, 640
HpyAV CCTTC 2 cut(s) 533, 671
HpyCH4III ACNGT 1 cut(s) 644
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 6 cut(s) 371, 479, 590, 602, 621, 743
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 587
HpyF3I CTNAG 2 cut(s) 118, 774
HpySE526I ACGT 1 cut(s) 501
Hsp92II CATG 1 cut(s) 20
HspAI GCGC 3 cut(s) 48, 66, 96
Kzo9I GATC 4 cut(s) 214, 319, 481, 724
LpnPI CCDG 9 cut(s) 56, 373, 387, 400, 470, 505, 525, 648, 786
LweI GCATC 3 cut(s) 200, 568, 630
MaeI CTAG 4 cut(s) 161, 348, 533, 759
MaeII ACGT 1 cut(s) 501
MalI GATC 4 cut(s) 216, 321, 483, 726
MboI GATC 4 cut(s) 214, 319, 481, 724
MboII GAAGA 4 cut(s) 521, 548, 557, 693
MfeI CAATTG 2 cut(s) 357, 786
MflI RGATCY 1 cut(s) 481
MlyI GAGTC 3 cut(s) 268, 482, 564
MmeI TCCRAC 2 cut(s) 128, 654
MnlI CCTC 4 cut(s) 127, 456, 559, 711
MslI CAYNNNNRTG 1 cut(s) 21
MspI CCGG 2 cut(s) 492, 635
MspR9I CCNGG 2 cut(s) 388, 635
MunI CAATTG 2 cut(s) 357, 786
MvaI CCWGG 1 cut(s) 388
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 39, 587
NciI CCSGG 1 cut(s) 635
NdeII GATC 4 cut(s) 214, 319, 481, 724
NlaIII CATG 1 cut(s) 20
NlaIV GGNNCC 1 cut(s) 632
PflMI CCANNNNNTGG 1 cut(s) 673
PfoI TCCNGGA 1 cut(s) 386
PleI GAGTC 3 cut(s) 268, 482, 563
PpsI GAGTC 3 cut(s) 268, 482, 563
PsiI TTATAA 1 cut(s) 411
Psp6I CCWGG 1 cut(s) 386
PspGI CCWGG 1 cut(s) 386
PspN4I GGNNCC 1 cut(s) 632
PspPI GGNCC 1 cut(s) 640
PsuI RGATCY 1 cut(s) 481
RsaI GTAC 2 cut(s) 77, 552
RsaNI GTAC 2 cut(s) 76, 551
RseI CAYNNNNRTG 1 cut(s) 21
Sau3AI GATC 4 cut(s) 214, 319, 481, 724
Sau96I GGNCC 1 cut(s) 640
SchI GAGTC 3 cut(s) 268, 482, 564
ScrFI CCNGG 2 cut(s) 388, 635
SetI ASST 1 cut(s) 504
SfaNI GCATC 3 cut(s) 200, 568, 630
SfcI CTRYAG 3 cut(s) 171, 424, 720
SinI GGWCC 1 cut(s) 640
SmiMI CAYNNNNRTG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
SspMI CTAG 4 cut(s) 161, 348, 533, 759
StyD4I CCNGG 2 cut(s) 386, 633
StyI CCWWGG 2 cut(s) 205, 315
TaaI ACNGT 1 cut(s) 644
TaiI ACGT 1 cut(s) 504
TaqI TCGA 2 cut(s) 234, 650
TspDTI ATGAA 2 cut(s) 100, 668
Van91I CCANNNNNTGG 1 cut(s) 673
VpaK11BI GGWCC 1 cut(s) 640
XapI RAATTY 4 cut(s) 222, 282, 391, 688
XbaI TCTAGA 2 cut(s) 160, 532
XspI CTAG 4 cut(s) 161, 348, 533, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.