Rh1BG028200

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
3938665 .. 3939090
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG028200.1

Sequence Viewer

Length: 426 bp
ATGCAACCACTCCATTGCGATTACCCAGGCTTTGATCTGTCATGCAACAAGGACAAGCAGACACTGCTCCAGATCACCCTATCATCAGCAGACAAGTTCTTGGTTAAAAGAATCGATAACACAGCTCAGGGAATTGAAATATATATTTATAATAATCACTACGATTATTTTGATGATTTCAAAAGTATTTGTATTTCTAGACAGATTTTCGAGCTCAGTTCCTCTCCATTCGAATTCTCAGACGCCCAAGTGAAAACTGACTATACCATATTCAGTTGTCCACCGTCAGATGAAAGAGATCGGCTTCCTTATCAGCTGGCGAAACTGAGCCCTTGCCTTGGTAATCACAGCAACATGATGTATGCTCTTGATGATTTATATGCAGACCTTGAATCGACGCTCGAGCTGGTCCAGACCATCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

141

Amino Acids

16.26

Weight (kDa)

4.48

Isoelectric Point (pI)

54.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 3 - 47 7e-08 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 150
AcsI RAATTY 1 cut(s) 233
AcyI GRCGYC 1 cut(s) 243
AfiI CCNNNNNNNGG 1 cut(s) 338
AgsI TTSAA 3 cut(s) 137, 181, 392
AjnI CCWGG 1 cut(s) 25
AluBI AGCT 4 cut(s) 125, 214, 316, 406
AluI AGCT 4 cut(s) 125, 214, 316, 406
Alw21I GWGCWC 1 cut(s) 216
AlwNI CAGNNNCTG 1 cut(s) 64
Ama87I CYCGRG 1 cut(s) 401
ApoI RAATTY 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 409
AsuHPI GGTGA 1 cut(s) 67
AsuII TTCGAA 1 cut(s) 231
AvaI CYCGRG 1 cut(s) 401
AvaII GGWCC 1 cut(s) 409
BanII GRGCYC 2 cut(s) 216, 332
Bbv12I GWGCWC 1 cut(s) 216
BccI CCATC 1 cut(s) 425
BciT130I CCWGG 1 cut(s) 27
BfaI CTAG 1 cut(s) 198
Bme1390I CCNGG 1 cut(s) 27
Bme18I GGWCC 1 cut(s) 409
BmeT110I CYCGRG 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 409
BmrFI CCNGG 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 126
Bpu14I TTCGAA 1 cut(s) 231
Bsa29I ATCGAT 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 25, 337
Bsc4I CCNNNNNNNGG 1 cut(s) 338
Bse3DI GCAATG 1 cut(s) 13
BseBI CCWGG 1 cut(s) 27
BseCI ATCGAT 1 cut(s) 114
BseDI CCNNGG 2 cut(s) 25, 337
BseLI CCNNNNNNNGG 1 cut(s) 338
BseMI GCAATG 1 cut(s) 13
BseMII CTCAG 4 cut(s) 140, 229, 252, 317
BshVI ATCGAT 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 216
BsiHKCI CYCGRG 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 338
BsoBI CYCGRG 1 cut(s) 401
Bsp119I TTCGAA 1 cut(s) 231
Bsp1286I GDGCHC 2 cut(s) 216, 332
Bsp143I GATC 3 cut(s) 34, 72, 298
BspCNI CTCAG 4 cut(s) 139, 228, 251, 318
BspDI ATCGAT 1 cut(s) 114
BspT104I TTCGAA 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 13
BssECI CCNNGG 2 cut(s) 25, 337
BssMI GATC 3 cut(s) 34, 72, 298
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 337
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 285
BstACI GRCGYC 1 cut(s) 243
BstAPI GCANNNNNTGC 1 cut(s) 64
BstBI TTCGAA 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 4 cut(s) 126, 215, 238, 326
BstKTI GATC 3 cut(s) 37, 75, 301
BstMBI GATC 3 cut(s) 34, 72, 298
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstNI CCWGG 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 25
Bsu15I ATCGAT 1 cut(s) 114
BsuTUI ATCGAT 1 cut(s) 114
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 1 cut(s) 62
Cac8I GCNNGC 1 cut(s) 318
CaiI CAGNNNCTG 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 409
ClaI ATCGAT 1 cut(s) 114
CseI GACGC 2 cut(s) 251, 406
CviAII CATG 2 cut(s) 42, 355
CviJI RGCY 7 cut(s) 30, 125, 214, 304, 316, 330, 406
CviKI_1 RGCY 7 cut(s) 30, 125, 214, 304, 316, 330, 406
DdeI CTNAG 4 cut(s) 126, 215, 238, 326
DpnI GATC 3 cut(s) 36, 74, 300
DpnII GATC 3 cut(s) 34, 72, 298
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 337
Eco24I GRGCYC 2 cut(s) 216, 332
Eco47I GGWCC 1 cut(s) 409
Eco53kI GAGCTC 1 cut(s) 214
Eco88I CYCGRG 1 cut(s) 401
EcoICRI GAGCTC 1 cut(s) 214
EcoRI GAATTC 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 337
EcoT38I GRGCYC 2 cut(s) 216, 332
ErhI CCWWGG 1 cut(s) 337
FaeI CATG 2 cut(s) 45, 358
FatI CATG 2 cut(s) 41, 354
FriOI GRGCYC 2 cut(s) 216, 332
FspBI CTAG 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 53
HgaI GACGC 2 cut(s) 251, 406
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 2 cut(s) 45, 358
HinfI GANTC 2 cut(s) 111, 392
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 281
Hpy188I TCNGA 2 cut(s) 241, 289
Hpy188III TCNNGA 4 cut(s) 70, 198, 368, 412
Hpy8I GTNNAC 1 cut(s) 281
Hpy99I CGWCG 1 cut(s) 400
HpyCH4III ACNGT 1 cut(s) 285
HpyCH4V TGCA 3 cut(s) 4, 45, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 4 cut(s) 126, 215, 238, 326
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 2 cut(s) 45, 358
Kzo9I GATC 3 cut(s) 34, 72, 298
LmnI GCTCC 1 cut(s) 72
LpnPI CCDG 6 cut(s) 12, 39, 83, 113, 302, 392
MaeI CTAG 1 cut(s) 198
MalI GATC 3 cut(s) 36, 74, 300
MboI GATC 3 cut(s) 34, 72, 298
MhlI GDGCHC 2 cut(s) 216, 332
MluCI AATT 2 cut(s) 132, 233
MnlI CCTC 1 cut(s) 232
MseI TTAA 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 316
MspR9I CCNGG 1 cut(s) 27
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 64
NdeII GATC 3 cut(s) 34, 72, 298
NlaIII CATG 2 cut(s) 45, 358
NspV TTCGAA 1 cut(s) 231
PaeR7I CTCGAG 1 cut(s) 401
PfeI GAWTC 2 cut(s) 111, 392
PsiI TTATAA 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PspPI GGNCC 1 cut(s) 409
PspXI VCTCGAGB 1 cut(s) 401
PstNI CAGNNNCTG 1 cut(s) 64
PvuII CAGCTG 1 cut(s) 316
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 1 cut(s) 105
Sau3AI GATC 3 cut(s) 34, 72, 298
Sau96I GGNCC 1 cut(s) 409
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 2 cut(s) 216, 332
SetI ASST 5 cut(s) 127, 216, 318, 390, 408
Sfr274I CTCGAG 1 cut(s) 401
SfuI TTCGAA 1 cut(s) 231
SinI GGWCC 1 cut(s) 409
SlaI CTCGAG 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 2 cut(s) 132, 233
SspMI CTAG 1 cut(s) 198
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 25
StyI CCWWGG 1 cut(s) 337
TaaI ACNGT 1 cut(s) 285
TaqI TCGA 5 cut(s) 114, 210, 231, 395, 402
TasI AATT 2 cut(s) 132, 233
TfiI GAWTC 2 cut(s) 111, 392
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 1 cut(s) 69
TspDTI ATGAA 1 cut(s) 306
TspRI CASTG 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 409
XapI RAATTY 1 cut(s) 233
XbaI TCTAGA 1 cut(s) 197
XhoI CTCGAG 1 cut(s) 401
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.