Rh3BG018200

Ammonium transporter

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
1156004 .. 1156300
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG018200.1

Sequence Viewer

Length: 297 bp
ATGAAGGAAACTGCTGTTACATCTAGCGACAATGAGGTGTATTTTCCTGAATTGATTTACAAGTGTCTGATCCAAGGAGAAGAGTTGGATTTGGAGCTAGCTGATGATGGAGATGCTCAGATTGCTGAGAGATTAGCGATTGTGGCACTTTGGTGCATCCAGTGGTACCCGGTGAGTCGCCCTTCCATGAAAGCAGTTGTTAGAATGCTGGAAGGACCCTCTGAAAGCTTGATCATGCCACCCAATCCGTTTGCTTCCACGACTCAGATGGAACAAACAACAACCCCATCAAGTTAA

Protein Analysis

98

Amino Acids

10.93

Weight (kDa)

4.16

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 165
AclWI GGATC 1 cut(s) 64
AfaI GTAC 1 cut(s) 167
AleI CACNNNNGTG 1 cut(s) 151
AluBI AGCT 3 cut(s) 97, 101, 228
AluI AGCT 3 cut(s) 97, 101, 228
AlwI GGATC 1 cut(s) 64
Asp718I GGTACC 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 215
AsuC2I CCSGG 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 184
AsuNHI GCTAGC 1 cut(s) 97
AvaII GGWCC 1 cut(s) 215
BanI GGYRCC 1 cut(s) 165
BccI CCATC 3 cut(s) 101, 262, 295
BclI TGATCA 1 cut(s) 231
BcnI CCSGG 1 cut(s) 170
BfaI CTAG 2 cut(s) 24, 98
Bme1390I CCNGG 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 2 cut(s) 167, 217
BmrFI CCNGG 1 cut(s) 170
BmsI GCATC 2 cut(s) 103, 165
BmtI GCTAGC 1 cut(s) 101
BpuMI CCSGG 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 1 cut(s) 156
BseMII CTCAG 3 cut(s) 117, 131, 278
BseNI ACTGG 1 cut(s) 160
BshNI GGYRCC 1 cut(s) 165
BsiSI CCGG 1 cut(s) 170
BsmI GAATGC 1 cut(s) 210
Bsp143I GATC 2 cut(s) 69, 231
BspCNI CTCAG 3 cut(s) 118, 130, 277
BspLI GGNNCC 2 cut(s) 167, 217
BspOI GCTAGC 1 cut(s) 101
BspPI GGATC 1 cut(s) 64
BspT107I GGYRCC 1 cut(s) 165
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 2 cut(s) 69, 231
BssT1I CCWWGG 1 cut(s) 73
Bst6I CTCTTC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 3 cut(s) 117, 126, 264
BstF5I GGATG 1 cut(s) 156
BstKTI GATC 2 cut(s) 72, 234
BstMBI GATC 2 cut(s) 69, 231
BstMWI GCNNNNNNNGC 2 cut(s) 122, 143
BstSCI CCNGG 1 cut(s) 168
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 215
Csp6I GTAC 1 cut(s) 166
CviAII CATG 2 cut(s) 187, 235
CviJI RGCY 3 cut(s) 97, 101, 228
CviKI_1 RGCY 3 cut(s) 97, 101, 228
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 3 cut(s) 117, 126, 264
DpnI GATC 2 cut(s) 71, 233
DpnII GATC 2 cut(s) 69, 231
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 2 cut(s) 190, 238
FaiI YATR 2 cut(s) 188, 236
FatI CATG 2 cut(s) 186, 234
FbaI TGATCA 1 cut(s) 231
FokI GGATG 1 cut(s) 143
FspBI CTAG 2 cut(s) 24, 98
HapII CCGG 1 cut(s) 170
Hin1II CATG 2 cut(s) 190, 238
HindIII AAGCTT 1 cut(s) 226
HinfI GANTC 2 cut(s) 175, 262
HpaII CCGG 1 cut(s) 170
HphI GGTGA 1 cut(s) 184
Hpy188I TCNGA 4 cut(s) 69, 120, 223, 267
Hpy188III TCNNGA 1 cut(s) 47
HpyAV CCTTC 2 cut(s) 192, 206
HpyCH4V TGCA 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 143
HpyF3I CTNAG 3 cut(s) 117, 126, 264
Hsp92II CATG 2 cut(s) 190, 238
KpnI GGTACC 1 cut(s) 169
Ksp22I TGATCA 1 cut(s) 231
Kzo9I GATC 2 cut(s) 69, 231
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 4 cut(s) 60, 173, 183, 194
LweI GCATC 2 cut(s) 103, 165
MaeI CTAG 2 cut(s) 24, 98
MaeIII GTNAC 1 cut(s) 16
MalI GATC 2 cut(s) 71, 233
MboI GATC 2 cut(s) 69, 231
MboII GAAGA 1 cut(s) 92
MluCI AATT 1 cut(s) 50
MlyI GAGTC 2 cut(s) 184, 256
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 2 cut(s) 28, 229
MseI TTAA 1 cut(s) 295
MslI CAYNNNNRTG 1 cut(s) 151
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 170
Mva1269I GAATGC 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 122, 143
NciI CCSGG 1 cut(s) 170
NdeII GATC 2 cut(s) 69, 231
NheI GCTAGC 1 cut(s) 97
NlaIII CATG 2 cut(s) 190, 238
NlaIV GGNNCC 2 cut(s) 167, 217
OliI CACNNNNGTG 1 cut(s) 151
PctI GAATGC 1 cut(s) 210
PleI GAGTC 2 cut(s) 183, 256
PpsI GAGTC 2 cut(s) 183, 256
PpuMI RGGWCCY 1 cut(s) 215
Psp5II RGGWCCY 1 cut(s) 215
PspN4I GGNNCC 2 cut(s) 167, 217
PspPI GGNCC 1 cut(s) 215
PspPPI RGGWCCY 1 cut(s) 215
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 151
SaqAI TTAA 1 cut(s) 295
Sau3AI GATC 2 cut(s) 69, 231
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 2 cut(s) 184, 256
ScrFI CCNGG 1 cut(s) 170
SetI ASST 4 cut(s) 39, 99, 103, 230
SfaNI GCATC 2 cut(s) 103, 165
SinI GGWCC 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 151
Sse9I AATT 1 cut(s) 50
SspMI CTAG 2 cut(s) 24, 98
StyD4I CCNGG 1 cut(s) 168
StyI CCWWGG 1 cut(s) 73
TasI AATT 1 cut(s) 50
Tru1I TTAA 1 cut(s) 295
Tru9I TTAA 1 cut(s) 295
TscAI CASTG 1 cut(s) 167
TspDTI ATGAA 2 cut(s) 17, 203
TspGWI ACGGA 1 cut(s) 237
TspRI CASTG 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 215
XcmI CCANNNNNNNNNTGG 1 cut(s) 265
XspI CTAG 2 cut(s) 24, 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.